mRNA_C-tenellus_contig7315.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7315.2.1
Unique NamemRNA_C-tenellus_contig7315.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7315.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7315contigC-tenellus_contig7315:2601..6077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3477
Hectar predicted targeting categoryother localisation
Exons1
Cds size1890
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.3201768-UTR-C-tenellus_contig7315:2600..28231680790028.3201768-UTR-C-tenellus_contig7315:2600..2823Choristocarpus tenellus KU2346UTRC-tenellus_contig7315 2601..2823 +
1680790028.3395686-UTR-C-tenellus_contig7315:4713..60771680790028.3395686-UTR-C-tenellus_contig7315:4713..6077Choristocarpus tenellus KU2346UTRC-tenellus_contig7315 4714..6077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.330209-CDS-C-tenellus_contig7315:2823..47131680790028.330209-CDS-C-tenellus_contig7315:2823..4713Choristocarpus tenellus KU2346CDSC-tenellus_contig7315 2824..4713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7315.2.1prot_C-tenellus_contig7315.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7315 2824..4713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7315.2.1

>prot_C-tenellus_contig7315.2.1 ID=prot_C-tenellus_contig7315.2.1|Name=mRNA_C-tenellus_contig7315.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=630bp
MNPPFAVIPNGEPFLTICTDTPPAQNTIRLGLGEGLVSKTPVPSTRRLQL
GNGMMSGWGREVGHSPAQEGLSNGGVNTPEKEQLSLKPVVGRGTGSSSSG
NELNPMGSLEVNVVCGPGASDAKDEVNVEVKSMAKPQQKPRKPVSEPEEK
FQVDSNVIKSEVKGVTRGVVSTESTAAVEGKPLEEVTRAMTLVEAKKLKA
AEKDVVKTQESSDAVSTPENLAITTATQTPKKLTSTRKVPVEKKKQGFNV
AVEVADAAVQGEGVATQSHYKTGKEYNLPDGEHSNVVGPAMTTPTVSPSR
IRSQSPLARHSRSSQLTPPNSGSQNPRSQPQRSHDQSNGRYHASRSCSAY
GAPDRGKGSRSPRRAIPRDSRDRLPCNGRDKAPRDSRDRSGRVGGRDRRS
SERWTSRPSDDHSDRDRHLDRRWDRSRSKEWNRSRERERDRSRDLDWGSR
RMRRSPIPHCSERGTSHSRGNIPRRSWGGRGKSCSRSRSCSRNRNRNRNQ
NQNRNRNRNRSRSRNDFMFPRESEEHNTVKKRGRSSNHADPGTVERRGRS
CSRSGSASTSSAKKRKRTVCQAPVKHDNKRVASGRSMSRSMPQADNAEAE
SLREQPQRMLQRNQTNREAPGKPHKDLQQ*
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mRNA from alignment at C-tenellus_contig7315:2601..6077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7315.2.1 ID=mRNA_C-tenellus_contig7315.2.1|Name=mRNA_C-tenellus_contig7315.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3477bp|location=Sequence derived from alignment at C-tenellus_contig7315:2601..6077+ (Choristocarpus tenellus KU2346)
CTTCCAGGCCCTACATTATCTGTGATAAGAGAATGTTCTCTGTGGTAAGA
GAATGTTCTCTGCGGAGTTTAAGGTACTGTGCCTTGCACAATTTACAGAG
AGGCGACAGGGGTTGAAGAGTTGCTACTAAGTACAGAGTAGTTGAGTGCC
TACGAGCAAGAACACTATATTCCTTGCTGCGTTCTGAAGATGTTTTTGAT
CTCGAATCTGACATAACCAGGTGATGAATCCCCCTTTTGCTGTCATTCCC
AACGGTGAACCGTTTCTTACAATATGTACAGATACACCTCCTGCCCAGAA
CACCATTCGGCTTGGCCTGGGCGAAGGTCTAGTGTCCAAGACACCAGTGC
CCTCAACACGAAGACTTCAGCTCGGAAACGGGATGATGAGCGGCTGGGGT
CGTGAAGTAGGGCATTCACCAGCTCAGGAGGGGTTGAGCAATGGTGGTGT
CAATACCCCAGAAAAAGAGCAGTTGTCCCTGAAGCCTGTTGTTGGTAGGG
GAACAGGCAGTTCCAGTTCCGGTAACGAGTTGAATCCGATGGGTTCCCTC
GAGGTGAACGTTGTCTGTGGTCCAGGTGCAAGCGATGCTAAGGATGAAGT
AAATGTCGAAGTAAAGTCCATGGCCAAGCCACAGCAGAAGCCCAGAAAAC
CTGTCTCAGAGCCTGAGGAAAAGTTTCAAGTTGATTCTAATGTTATCAAG
AGTGAGGTGAAAGGTGTGACAAGAGGGGTAGTAAGTACCGAGTCTACCGC
GGCAGTAGAAGGGAAGCCATTAGAGGAGGTGACTAGGGCAATGACACTAG
TGGAGGCTAAGAAGTTGAAGGCTGCCGAAAAGGATGTGGTAAAGACTCAA
GAGAGCTCAGATGCTGTGAGCACTCCTGAAAACCTGGCTATTACCACCGC
CACCCAAACTCCTAAGAAATTGACATCAACGAGGAAGGTCCCTGTGGAAA
AAAAGAAGCAAGGCTTCAATGTTGCTGTGGAGGTGGCTGACGCAGCTGTC
CAGGGCGAAGGTGTTGCTACACAAAGCCACTACAAAACTGGGAAGGAATA
CAATTTGCCAGATGGGGAGCACAGCAATGTTGTGGGTCCAGCCATGACCA
CGCCTACCGTAAGCCCATCACGTATTCGGAGTCAAAGTCCGCTTGCCAGA
CACTCAAGGTCCTCTCAGTTGACCCCCCCCAACTCTGGCTCACAGAACCC
AAGGTCGCAACCCCAACGTAGCCACGACCAATCCAATGGCCGATATCATG
CAAGCAGATCTTGTTCTGCCTATGGAGCACCCGACAGGGGCAAGGGGAGT
CGCAGCCCAAGGCGCGCTATTCCTCGTGACAGTCGGGACCGATTGCCTTG
CAATGGCCGTGACAAAGCACCACGTGATAGCCGTGACCGATCAGGACGAG
TTGGAGGTAGGGATCGGAGAAGCTCAGAGCGGTGGACCTCACGACCTTCT
GATGACCATAGTGATAGAGACAGACATCTGGACAGGAGGTGGGACAGGTC
AAGGAGCAAGGAGTGGAACAGGTCTAGGGAGAGGGAGAGGGACAGATCTA
GGGACTTGGACTGGGGCTCCAGGCGTATGCGCCGGAGCCCTATCCCTCAC
TGTTCAGAGCGTGGCACCAGTCACAGCAGGGGAAACATTCCCAGAAGGTC
ATGGGGTGGTAGGGGTAAGAGCTGTAGCCGCAGCCGTAGTTGCAGTCGGA
ATCGGAACCGGAACCGGAACCAGAACCAGAACAGGAACCGGAACCGGAAC
CGCAGTCGAAGTAGGAATGACTTCATGTTCCCGAGGGAGAGTGAGGAGCA
CAATACTGTCAAAAAGAGAGGGCGCAGCTCAAACCACGCTGACCCTGGCA
CTGTTGAGAGACGAGGCCGCTCCTGTAGCCGCAGTGGCAGTGCTTCTACA
TCCAGCGCAAAAAAGAGGAAGCGGACAGTATGCCAGGCCCCTGTAAAGCA
TGACAACAAGAGGGTGGCTAGTGGCAGGTCTATGTCGCGTAGCATGCCAC
AGGCTGACAATGCCGAAGCAGAGTCTTTAAGGGAGCAACCCCAGCGAATG
TTGCAGAGGAACCAGACCAATAGGGAAGCGCCAGGAAAGCCACACAAGGA
TCTCCAGCAATAGCAACTAGCTATGACATACCTAGGCTCAGCGATGCCTG
TTTCTTCTGTTTGGAATGTTCTCCTAGCCCTCAAACTGGCATTATGACTG
CTGTGTCGGCTCTTCTGGCATGCTTTTGGTTCTGCAAGGTTCCATGCAGT
CACTTGGTATTTACTATGTGTGATGGAAGTTAATGCCCCTGCTGTGGGTT
GACTACTGTGCTGATTGTCTCGTTATGTACACTTAGAGAGCACTCTTGGT
GTGGTTGGAAGAAGCGATTTTTGACTCTACATGGTCGTTCAACAGCTTCA
TTGATCAGGCGGTTTGCGATGTGCAAGTATTAGTTTTGTTTGGACTACTG
TGGTAGTGGGGATGAGAACATTGTACATTTTATCGTTGTTAGGGACCATA
GAGTGCTCTCATATAATGTTGAGCGTTTGTAACAAGTTTTATTGTTTTCT
GTGTCAGATATGAGGGATAGTGCACATGATGGGTCTGATGTGACATGATG
TGGTGTGATATTGTGTGGTGAAGTTTGATGTACAGCTCTTGTGTATGTAT
GATCCTTTGGTGTTTCTTCTCATTGGTGTGTTGGACTGGGGCAGGGGGTG
ATTTGTGACTCCGCATTTTAATGAGCAGATTAGAAAGCTGCTCGTATATG
ATCACATGGCTCTGTGGCATTTGTAAGATATTCGTCTTGCCAAACCAGAC
TAAGTCGCTGTTAACTGTTGCTGGGCTGCTAGTTGTTCCTCTTATTAAGA
ATAGACTGTTGTGTTTGTTTATGTGGCTGGTTCTCATAAGGTAATGGACG
AGAGAGTACAAGGGGAGTAAATAAGTTGGCAATTCCGCTCTAAACGTTAT
CCTCACTCCATAGCCCTCGGCTCCGTGCTCCCTTCCAAGAATGTACTTGT
ATCTTTGTTCCACAAAAAGGAGTGCTTGATCGGTTGATTTCTGTCTCAAA
GAGGGTACAGAGTTTAAAGCGCAGTAACTATTTTATAAACGTTACTATGT
TGTTGTGCTAGTTTTTTTTGGTTAAAATCAGAACGTTTTCTGTTGTAGGC
ATAACTACTGCTATGCTTCCTACTATGTAGTACAGCCGTCTTGAGGCAGC
CTTTCCCGTGTTACTCTAAACAAGGTTGAAGAGAAGCTGCAGCCTAGTGC
AATGCATCACAGATAGTAGAGATTTTGGTAGAAGCGTACAAACATGATGG
ATATAATTGACCTCGGAAGAAAGAAAGGCAAGTGAAACAACTAGAGCAAC
AAAGGAGATCTTTTTTGTGTTGAGAAGATGAGTGTGTGAGTAAAGAGTGA
CGCACAGGTAGGGAGCCGGATGTTCTCGGGAGCCGTAGTGAGTACCATCA
TTATTGATTGATTGAGCAAGGTCCTGC
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Coding sequence (CDS) from alignment at C-tenellus_contig7315:2601..6077+

>mRNA_C-tenellus_contig7315.2.1 ID=mRNA_C-tenellus_contig7315.2.1|Name=mRNA_C-tenellus_contig7315.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1890bp|location=Sequence derived from alignment at C-tenellus_contig7315:2601..6077+ (Choristocarpus tenellus KU2346)
ATGAATCCCCCTTTTGCTGTCATTCCCAACGGTGAACCGTTTCTTACAAT
ATGTACAGATACACCTCCTGCCCAGAACACCATTCGGCTTGGCCTGGGCG
AAGGTCTAGTGTCCAAGACACCAGTGCCCTCAACACGAAGACTTCAGCTC
GGAAACGGGATGATGAGCGGCTGGGGTCGTGAAGTAGGGCATTCACCAGC
TCAGGAGGGGTTGAGCAATGGTGGTGTCAATACCCCAGAAAAAGAGCAGT
TGTCCCTGAAGCCTGTTGTTGGTAGGGGAACAGGCAGTTCCAGTTCCGGT
AACGAGTTGAATCCGATGGGTTCCCTCGAGGTGAACGTTGTCTGTGGTCC
AGGTGCAAGCGATGCTAAGGATGAAGTAAATGTCGAAGTAAAGTCCATGG
CCAAGCCACAGCAGAAGCCCAGAAAACCTGTCTCAGAGCCTGAGGAAAAG
TTTCAAGTTGATTCTAATGTTATCAAGAGTGAGGTGAAAGGTGTGACAAG
AGGGGTAGTAAGTACCGAGTCTACCGCGGCAGTAGAAGGGAAGCCATTAG
AGGAGGTGACTAGGGCAATGACACTAGTGGAGGCTAAGAAGTTGAAGGCT
GCCGAAAAGGATGTGGTAAAGACTCAAGAGAGCTCAGATGCTGTGAGCAC
TCCTGAAAACCTGGCTATTACCACCGCCACCCAAACTCCTAAGAAATTGA
CATCAACGAGGAAGGTCCCTGTGGAAAAAAAGAAGCAAGGCTTCAATGTT
GCTGTGGAGGTGGCTGACGCAGCTGTCCAGGGCGAAGGTGTTGCTACACA
AAGCCACTACAAAACTGGGAAGGAATACAATTTGCCAGATGGGGAGCACA
GCAATGTTGTGGGTCCAGCCATGACCACGCCTACCGTAAGCCCATCACGT
ATTCGGAGTCAAAGTCCGCTTGCCAGACACTCAAGGTCCTCTCAGTTGAC
CCCCCCCAACTCTGGCTCACAGAACCCAAGGTCGCAACCCCAACGTAGCC
ACGACCAATCCAATGGCCGATATCATGCAAGCAGATCTTGTTCTGCCTAT
GGAGCACCCGACAGGGGCAAGGGGAGTCGCAGCCCAAGGCGCGCTATTCC
TCGTGACAGTCGGGACCGATTGCCTTGCAATGGCCGTGACAAAGCACCAC
GTGATAGCCGTGACCGATCAGGACGAGTTGGAGGTAGGGATCGGAGAAGC
TCAGAGCGGTGGACCTCACGACCTTCTGATGACCATAGTGATAGAGACAG
ACATCTGGACAGGAGGTGGGACAGGTCAAGGAGCAAGGAGTGGAACAGGT
CTAGGGAGAGGGAGAGGGACAGATCTAGGGACTTGGACTGGGGCTCCAGG
CGTATGCGCCGGAGCCCTATCCCTCACTGTTCAGAGCGTGGCACCAGTCA
CAGCAGGGGAAACATTCCCAGAAGGTCATGGGGTGGTAGGGGTAAGAGCT
GTAGCCGCAGCCGTAGTTGCAGTCGGAATCGGAACCGGAACCGGAACCAG
AACCAGAACAGGAACCGGAACCGGAACCGCAGTCGAAGTAGGAATGACTT
CATGTTCCCGAGGGAGAGTGAGGAGCACAATACTGTCAAAAAGAGAGGGC
GCAGCTCAAACCACGCTGACCCTGGCACTGTTGAGAGACGAGGCCGCTCC
TGTAGCCGCAGTGGCAGTGCTTCTACATCCAGCGCAAAAAAGAGGAAGCG
GACAGTATGCCAGGCCCCTGTAAAGCATGACAACAAGAGGGTGGCTAGTG
GCAGGTCTATGTCGCGTAGCATGCCACAGGCTGACAATGCCGAAGCAGAG
TCTTTAAGGGAGCAACCCCAGCGAATGTTGCAGAGGAACCAGACCAATAG
GGAAGCGCCAGGAAAGCCACACAAGGATCTCCAGCAATAG
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