mRNA_C-tenellus_contig7314.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7314.3.1
Unique NamemRNA_C-tenellus_contig7314.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: D8LCK6_ECTSI (Protein transport protein SEC23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCK6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.680e-19
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 MDSWDIRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMKVSQCQDRVGWWDKGRCRG 186
            M+ WD+ G+EERD++RFSWNVWPSSRLEATR+VVPVGCLYTPMK          +D  RC G
Sbjct:    1 MEVWDVLGAEERDAVRFSWNVWPSSRLEATRIVVPVGCLYTPMKSRHDAPPPLAYDPIRCNG 62
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: A0A7S4D7Q8_HETAK (Protein transport protein SEC23 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7Q8_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-18
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 MDSWDIRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMKVSQCQDRVGWWDKGRCRG 186
            M+ WD+  +EERD  RFSWNVWPSS+LEATR+VVP+GCLYTP+K  +       +D  RC G
Sbjct:    1 MEGWDVHAAEERDGARFSWNVWPSSKLEATRIVVPLGCLYTPLKKIEGMPPALAYDPIRCNG 62
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: A0A482RVW2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVW2_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 9.560e-18
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 MDSWDIRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMKVSQCQDRVGWWDKGRCRG 186
            M  WD  G E+RD +RFSWNVWP++RLEATR+V P+GC+Y+P+K  +       +D  RC G
Sbjct:    1 MQQWDFYGPEQRDGVRFSWNVWPTTRLEATRIVAPIGCMYSPLKKIEGMPDSLAYDPIRCNG 62
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: A0A7S2Y1K9_9STRA (Protein transport protein SEC23 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1K9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.340e-17
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 MDSWDIRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMKVSQCQDRVGWWDKGRCRG 186
            M+ WD   +EERD  RFSWNVWPSSRLEATR+VVPVGCLYTP+K  +       +D  RC G
Sbjct:    1 MEGWDWGAAEERDGARFSWNVWPSSRLEATRIVVPVGCLYTPLKRLENMPPPLAYDPIRCNG 62
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: A0A835YT42_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT42_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.860e-17
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   10 WDIRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMKVSQCQDRVGWWDKGRCRG 186
            WD++G+EERD +RFSWNVWPSS+LEATR+VVP GCLY+P+K  +       +D  RC G
Sbjct:   10 WDLQGNEERDGVRFSWNVWPSSKLEATRIVVPTGCLYSPLKRLEGMPPALAYDPIRCNG 68
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: A0A7D9JDQ7_PARCT (Protein transport protein SEC23 (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JDQ7_PARCT)

HSP 1 Score: 75.5 bits (184), Expect = 1.980e-16
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   16 IRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMK 132
            I+ +E+RD +RFSWNVWPSSRLEATRMVVPVGC+YTP+K
Sbjct:    8 IQQNEDRDGVRFSWNVWPSSRLEATRMVVPVGCMYTPLK 46
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: A0A0L0F7J6_9EUKA (Protein transport protein SEC23 (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0F7J6_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 9.640e-16
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   16 IRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMKVSQ 141
            I  +E+RD IRFSWNVWPSSRLEA R++VP+GCLYTP+K  +
Sbjct:    8 IEDNEDRDGIRFSWNVWPSSRLEAQRLIVPIGCLYTPLKAKE 49
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: T1HWT2_RHOPR (Protein transport protein SEC23 n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1HWT2_RHOPR)

HSP 1 Score: 74.3 bits (181), Expect = 1.380e-15
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   16 IRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMK 132
            I+ SEERD IRF+WNVWPSSRLEATR+VVPVGCLY P+K
Sbjct:    8 IQQSEERDGIRFTWNVWPSSRLEATRLVVPVGCLYQPLK 46
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BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: A0A7S3HKU0_9STRA (Protein transport protein SEC23 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKU0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.130e-15
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 MDSWDIRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMKVSQCQDRVGWWDKGRCRG 186
               WD  G E+RD IR SWN WPSSR+EATR+VVP+GCLY+P+K  +       +D  RC G
Sbjct:    2 QQQWDFHGPEQRDGIRNSWNTWPSSRIEATRIVVPLGCLYSPLKRIENMPGSLAYDPIRCNG 63
[Close]
BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Match: A0A3B3CQ01_ORYME (Protein transport protein SEC23 n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B3CQ01_ORYME)

HSP 1 Score: 72.0 bits (175), Expect = 2.840e-15
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:   16 IRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMK 132
            I  +EERD IRFSWNVWPSSRLEATRMVVPVG L+TP+K
Sbjct:    8 IAQNEERDGIRFSWNVWPSSRLEATRMVVPVGALFTPLK 46
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7314.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCK6_ECTSI4.680e-1964.52Protein transport protein SEC23 n=2 Tax=Ectocarpus... [more]
A0A7S4D7Q8_HETAK1.500e-1858.06Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A482RVW2_9ARCH9.560e-1851.61Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2Y1K9_9STRA1.340e-1761.29Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A835YT42_9STRA6.860e-1759.32Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
A0A7D9JDQ7_PARCT1.980e-1679.49Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A0L0F7J6_9EUKA9.640e-1669.05Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
T1HWT2_RHOPR1.380e-1582.05Protein transport protein SEC23 n=1 Tax=Rhodnius p... [more]
A0A7S3HKU0_9STRA2.130e-1553.23Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A3B3CQ01_ORYME2.840e-1582.05Protein transport protein SEC23 n=2 Tax=Percomorph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7314contigC-tenellus_contig7314:4627..4812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCK6
Preferred nameSEC23A
PFAMsGelsolin,Sec23_BS,Sec23_helical,Sec23_trunk,zf-Sec23_Sec24
Model size186
Max annot lvl2759|Eukaryota
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001501,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003330,GO:0003331,GO:0003400,GO:0003674,GO:0005096,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007163,GO:0007275,GO:0007389,GO:0007399,GO:0007424,GO:0007517,GO:0007591,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008360,GO:0008363,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016203,GO:0016236,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019898,GO:0019941,GO:0022008,GO:0022407,GO:0022409,GO:0022603,GO:0022604,GO:0022607,GO:0030011,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030154,GO:0030155,GO:0030163,GO:0030198,GO:0030234,GO:0030433,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030695,GO:0031090,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033333,GO:0033334,GO:0033339,GO:0033554,GO:0034394,GO:0034613,GO:0034622,GO:0034976,GO:0035017,GO:0035107,GO:0035138,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035293,GO:0035295,GO:0035459,GO:0036503,GO:0040003,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042886,GO:0043009,GO:0043062,GO:0043085,GO:0043087,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0043632,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045785,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048070,GO:0048079,GO:0048081,GO:0048087,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048209,GO:0048471,GO:0048475,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048699,GO:0048701,GO:0048702,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060341,GO:0060538,GO:0060541,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061061,GO:0061448,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070971,GO:0071702,GO:0071704,GO:0071705,GO:0071711,GO:0071840,GO:0072657,GO:0072659,GO:0090110,GO:0090113,GO:0090114,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0120035,GO:1900006,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903053,GO:1903055,GO:1903530,GO:1903532,GO:1904888,GO:1990778,GO:2000026
Exons1
Evalue7.68e-20
EggNOG OGsCOG5047@1|root,KOG1986@2759|Eukaryota
DescriptionCOPII-coated vesicle budding
Cds size186
COG categoryU
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.2816474-CDS-C-tenellus_contig7314:4626..48121680790028.2816474-CDS-C-tenellus_contig7314:4626..4812Choristocarpus tenellus KU2346CDSC-tenellus_contig7314 4627..4812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7314.3.1prot_C-tenellus_contig7314.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7314 4627..4812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7314.3.1

>prot_C-tenellus_contig7314.3.1 ID=prot_C-tenellus_contig7314.3.1|Name=mRNA_C-tenellus_contig7314.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=62bp
MDSWDIRGSEERDSIRFSWNVWPSSRLEATRMVVPVGCLYTPMKVSQCQD
RVGWWDKGRCRG
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mRNA from alignment at C-tenellus_contig7314:4627..4812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7314.3.1 ID=mRNA_C-tenellus_contig7314.3.1|Name=mRNA_C-tenellus_contig7314.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=186bp|location=Sequence derived from alignment at C-tenellus_contig7314:4627..4812+ (Choristocarpus tenellus KU2346)
ATGGATAGCTGGGATATTCGGGGGTCAGAGGAGAGGGACTCTATCCGCTT
CTCATGGAACGTGTGGCCAAGTTCCAGACTCGAGGCCACTCGCATGGTAG
TTCCTGTGGGGTGTCTCTATACGCCAATGAAGGTGAGCCAGTGTCAGGAC
AGAGTAGGGTGGTGGGATAAAGGCAGGTGCAGGGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7314:4627..4812+

>mRNA_C-tenellus_contig7314.3.1 ID=mRNA_C-tenellus_contig7314.3.1|Name=mRNA_C-tenellus_contig7314.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=186bp|location=Sequence derived from alignment at C-tenellus_contig7314:4627..4812+ (Choristocarpus tenellus KU2346)
ATGGATAGCTGGGATATTCGGGGGTCAGAGGAGAGGGACTCTATCCGCTT
CTCATGGAACGTGTGGCCAAGTTCCAGACTCGAGGCCACTCGCATGGTAG
TTCCTGTGGGGTGTCTCTATACGCCAATGAAGGTGAGCCAGTGTCAGGAC
AGAGTAGGGTGGTGGGATAAAGGCAGGTGCAGGGGA
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