mRNA_C-tenellus_contig7277.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7277.3.1
Unique NamemRNA_C-tenellus_contig7277.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7277.3.1 vs. uniprot
Match: A0A836CNG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.250e-14
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 2 
Query:  251 MAAFIIKIMNYVAGELITKRLARSKTFQDLAVRTHDKIQAVKGIVEDPRQAEQTLKEAEKILRS--GRGQVDDTATSVGARFRRFQAALKEEIERDLGR 541
            M A   KI+N+ A E+ITKRLA+SKTFQD+A++TH  +Q  +G + DP+  ++  KEA K+      +  V   A+S G    RF+ AL EEI +D+ +
Sbjct:    1 MNALFTKIINHFASEMITKRLAQSKTFQDMALKTHQHVQKGRGAINDPKLQQELYKEASKVASQVVSKEAVSQKASSFGQTLSRFRRALGEEINKDINK 99
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BLAST of mRNA_C-tenellus_contig7277.3.1 vs. uniprot
Match: D8LEY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEY4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.920e-11
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 2 
Query:  251 MAAFIIKIMNYVAGELITKRLARSKTFQDLAVRTHDKIQAVKGIVEDPRQAEQTLKEAEKILRSGRGQVDDTATSVGARFRRFQAALKEEI 523
            MA F+IKI+N+ A E+ITKRLA S+ FQ  A++TH K++  K  V D         EA K++R    +V     SV + F RF+AALK+E+
Sbjct:    1 MAQFLIKIVNHFASEIITKRLANSRAFQQFAMKTHLKVEQTKKKVAD------NPGEAAKLMRGAGEKVKAEVDSVASSFERFKAALKKEV 85
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7277.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CNG9_9STRA1.250e-1442.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LEY4_ECTSI7.920e-1143.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7277contigC-tenellus_contig7277:3399..5777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000016504
Model size1843
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.74e-05
EggNOG OGs2CT7A@1|root,2RF5U@2759|Eukaryota,1MI2D@121069|Pythiales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006020.1
Descriptionfunction. Source PGD
Cds size312
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790025.3591788-UTR-C-tenellus_contig7277:3398..46791680790025.3591788-UTR-C-tenellus_contig7277:3398..4679Choristocarpus tenellus KU2346UTRC-tenellus_contig7277 3399..4679 -
1680790025.394688-UTR-C-tenellus_contig7277:5527..57771680790025.394688-UTR-C-tenellus_contig7277:5527..5777Choristocarpus tenellus KU2346UTRC-tenellus_contig7277 5528..5777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790025.3716137-CDS-C-tenellus_contig7277:4679..48801680790025.3716137-CDS-C-tenellus_contig7277:4679..4880Choristocarpus tenellus KU2346CDSC-tenellus_contig7277 4680..4880 -
1680790025.3840988-CDS-C-tenellus_contig7277:5416..55271680790025.3840988-CDS-C-tenellus_contig7277:5416..5527Choristocarpus tenellus KU2346CDSC-tenellus_contig7277 5417..5527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7277.3.1prot_C-tenellus_contig7277.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7277 4680..5527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7277.3.1

>prot_C-tenellus_contig7277.3.1 ID=prot_C-tenellus_contig7277.3.1|Name=mRNA_C-tenellus_contig7277.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
MAAFIIKIMNYVAGELITKRLARSKTFQDLAVRTHDKIQAVKGIVEDPRQ
AEQTLKEAEKILRSGRGQVDDTATSVGARFRRFQAALKEEIERDLGRGKG
KTK*
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mRNA from alignment at C-tenellus_contig7277:3399..5777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7277.3.1 ID=mRNA_C-tenellus_contig7277.3.1|Name=mRNA_C-tenellus_contig7277.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2379bp|location=Sequence derived from alignment at C-tenellus_contig7277:3399..5777- (Choristocarpus tenellus KU2346)
CGTTTCACTCCTGTCTAGGAACTACGTACAATAAAGTGGTTGAGGTTCTA
ATTTAAACGACTTGTATGTGAGTTTGGGAATGTTATTGCGTTGATGGAAG
CATCACCAACACGCCTCTTCGAAAATAAACCCCCCTCCACAACACCAACA
TCTCTTGCATCATCCTCAATAACCTTGACCACCGATGAAGTAGAGAGAGG
GAAGAGCAAAGGTTTGAGCATCCCTTCAAGGACACATCAGCGGTACACGT
ATGGCTGCGTTTATCATCAAAATTATGAACTACGTCGCCGGTGAGCTCAT
CACGAAGCGACTTGCAAGGTCAAAAACGTTTCAAGACCTTGCTGTGAGGA
CACACGACAAGGTAAGAATGGCACTTGCCCGTCAAAGGTTTATGTAAGGG
TATACTTGTTGTTAACACCTGGTGCAGTACATAGCAGACCAGGTGTAGTT
CTCGACGTCGTCATGCTGTCACTTTCTTCCTCCTCTCCCCTCTTAGGGTT
GGCCTGTCGATTTTTTCCAAGAATAGTATAGATGTTTTCTAACTTAACGC
GACCCCCATATAGTAATATAGCGATGATGAACATGATGTTGATTCTCGTG
AGTAACACATCATCCCGGGCGCATCTCATTAACATCTCAGTAGATTCTCA
TCTCGCGGTCTGTTCTTTGGTTCAGTTTTGTCCCACTTTAGTGAGTTTTT
TCCGTTCTCCATCCAGAGTATCTAGTCTGTCGTTGACTTTCTGATTATTT
TTCAAGGGACAGATATTAGAGTTTCAGTTGATCCTCTGGAGCAAGAGAGC
CTCAGCTATATACAAGTCTTCCACTGGAAGTAGCACATCTCATGACTGCA
ACATCGCGTCCTCTGTTTTTCTGATGTGTTGCCTGTGAGACCCGCAGATT
CAGGCCGTGAAGGGCATTGTAGAGGACCCGAGGCAGGCGGAGCAGACCTT
GAAAGAGGCAGAAAAAATTCTTCGATCCGGGAGGGGTCAGGTCGATGATA
CTGCCACATCCGTAGGGGCACGGTTTCGTCGATTCCAAGCTGCGCTGAAG
GAGGAGATCGAGCGAGATCTGGGAAGGGGTAAGGGTAAGACAAAATGAAA
TCATGTTATGGGAAAAATTTTGCACACTGAGTGTATGATGCTGGAGATGA
GGAGAATGAGACCTGGAGGGACTAGTTGATGGTAGAATGCATTCTGATTG
TTTTGTATTGGTTGGCGAAGTTGGAGTCAACACCGATGGGGAGCTACCAG
ATGTTGTGTCCCATCCTCCAAGCCCCTGATCCCCACCCTTAACAATCGTA
CCAAAGCTTTGCCTGCCTTTTATATTGTTTAAAGGCCTTGGTTTATGTCT
TGAATATGTCTTGTTGCAGAGGTTATCCTTTGTTATATAGTGACCAGGAC
AACACCATTTTTTTGAACCTTAAGTTCATCATGCAGAGAAGGTGTTGTAT
GACCCTCCTGGTCCATATTTTCCGGCTCACCCTGCCTCTAACTGATAGTT
TTTGTGCTGTTTCTATGACCTGGGAAATGTTTCTGTAGGGCCCAAGGAAT
ATGAGTAGACAATTGTGGAGACTCTCACCACAGTTAGGTGCAGACCACAA
TAGTTGCAGATCAATGCCCGCTCTGAGTTTATGCAAAGCCCACTCAAGAT
GTATGTATTGCTATTCGAGCAGGCTCTGTTGAGTGCCCCATCCATTCCTA
CTTCCAAGTCCTTGTTGAGGTCGTGATATAACCAAGGTTTGGTAGTGTGT
TTGGCCTGTCTTATTTTGGTCATCGATCAATTGTCTGAGGCAGAAAGTGC
AAGTGTCTGCATGTTATGCACCTTGTGCTATTGGTTATTGTTCTCAGACT
TTTTATTGTACACAGAAGAGTCTGGTAAGTTTTTCTCTTCTGAAGGTCAG
TGGGGGGGGGATGGGGTAGTCACTCATGTCCTTTGGTTTGGGAAGGATTT
TCCAGCAGTTATGTATAGAAGCATCAAAAGGAGTATCTACATGCAGTATA
TTTTTTGCCTAGTAGATTGTTAATTTAAGGTACTCTTAAAAAAATATTTC
GAGGACTACATGCGCCATCAGCGTTGTATTTTTGACTGGGTGATGATAGT
GACCATCTCAACTGCATTATCCGCCCAACTCTTAATTTTTGTCATGTAGG
ATATCAAAATAGGTTGAAGTGGATGTGCCAATTGTAGGCGTGCTTGTGTG
TGAACCTGATATGTTTTGCCTTAACGCCCTACAGCGTCCTGTCTGATTCA
AGGCCTCTGACGCACCTTAAATGGATTTTGTACAATCTTCAAAAAGGGAT
CATAACAGCTCAAGCCATCACATCCTTCGTTCTTGCACGGATTTGCCTAC
AAGCCATTGATGTTGCATTTTTTATAGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig7277:3399..5777-

>mRNA_C-tenellus_contig7277.3.1 ID=mRNA_C-tenellus_contig7277.3.1|Name=mRNA_C-tenellus_contig7277.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig7277:3399..5777- (Choristocarpus tenellus KU2346)
ATGGCTGCGTTTATCATCAAAATTATGAACTACGTCGCCGGTGAGCTCAT
CACGAAGCGACTTGCAAGGTCAAAAACGTTTCAAGACCTTGCTGTGAGGA
CACACGACAAGATTCAGGCCGTGAAGGGCATTGTAGAGGACCCGAGGCAG
GCGGAGCAGACCTTGAAAGAGGCAGAAAAAATTCTTCGATCCGGGAGGGG
TCAGGTCGATGATACTGCCACATCCGTAGGGGCACGGTTTCGTCGATTCC
AAGCTGCGCTGAAGGAGGAGATCGAGCGAGATCTGGGAAGGGGTAAGGGT
AAGACAAAATGA
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