mRNA_C-tenellus_contig7274.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7274.3.1
Unique NamemRNA_C-tenellus_contig7274.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: A0A6U3ULQ3_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ULQ3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.750e-17
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            +SNILAARS+SNILR+SLGPKGMDKMLVSPDGDVTITNDGATI
Sbjct:   31 KSNILAARSISNILRTSLGPKGMDKMLVSPDGDVTITNDGATI 73
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BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: A0A2A2M0N7_9BILA (Uncharacterized protein n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2M0N7_9BILA)

HSP 1 Score: 76.6 bits (187), Expect = 7.010e-17
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            +S+ILAARSVSN LRSSLGP+G+DKM+VSPDGDVTITNDGATI
Sbjct:   35 KSHILAARSVSNTLRSSLGPRGLDKMIVSPDGDVTITNDGATI 77
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BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.470e-16
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            ++NILAARSVSNILRSSLGPKGMDKMLVSPDGDVTI+NDGATI
Sbjct:   31 KTNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTISNDGATI 73
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BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: A0A7S0SVM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SVM0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.810e-16
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            +SNI+AARSVSN+LR+SLGPKGMDKMLVS DGDVTITNDGATI
Sbjct:   31 KSNIMAARSVSNLLRTSLGPKGMDKMLVSSDGDVTITNDGATI 73
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BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: B7G2T8_PHATC (T-complex protein 1 subunit epsilon n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2T8_PHATC)

HSP 1 Score: 79.7 bits (195), Expect = 3.750e-16
Identity = 38/43 (88.37%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            +SNILAARS+SN+LR+SLGPKG+DKMLVSPDGDVTITNDGATI
Sbjct:   31 KSNILAARSISNMLRTSLGPKGLDKMLVSPDGDVTITNDGATI 73
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BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: A0A1E7FRJ6_9STRA (T-complex protein 1 subunit epsilon n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FRJ6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.760e-16
Identity = 38/43 (88.37%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            ++NILAARS+SNILR+SLGPKGMDK+LVSPDGDVTITNDGATI
Sbjct:   31 KANILAARSISNILRTSLGPKGMDKLLVSPDGDVTITNDGATI 73
[Close]
BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: A0A835ZI55_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI55_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.000e-16
Identity = 38/43 (88.37%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            +SNILAARSVS++LR+SLGPKGMDKM+VSPDGDVTITNDGATI
Sbjct:   32 KSNILAARSVSSLLRTSLGPKGMDKMMVSPDGDVTITNDGATI 74
[Close]
BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: A0A7S2SPL3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPL3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.330e-16
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            +SNILAARSVSNILR+SLGPKGMDKMLV  DG VTITNDGATI
Sbjct:   60 KSNILAARSVSNILRTSLGPKGMDKMLVDQDGGVTITNDGATI 102
[Close]
BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: A0A261BK46_9PELO (Uncharacterized protein (Fragment) n=3 Tax=Caenorhabditis TaxID=6237 RepID=A0A261BK46_9PELO)

HSP 1 Score: 73.9 bits (180), Expect = 9.180e-16
Identity = 35/43 (81.40%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            +S+ILAAR+V+N LR+SLGP+G+DKMLVSPDGDVTITNDGATI
Sbjct:   36 KSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATI 78
[Close]
BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Match: A0A7S3PR08_9STRA (T-complex protein 1 subunit epsilon n=3 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR08_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.560e-16
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   25 QSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGATI 153
            ++NILAAR+VS +LRSSLGPKGMDKMLVSPDGDVTITNDGATI
Sbjct:   31 KANILAARTVSGVLRSSLGPKGMDKMLVSPDGDVTITNDGATI 73
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7274.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U3ULQ3_9STRA5.750e-1793.02T-complex protein 1 subunit epsilon n=1 Tax=Ditylu... [more]
A0A2A2M0N7_9BILA7.010e-1786.05Uncharacterized protein n=1 Tax=Diploscapter pachy... [more]
D7FI32_ECTSI1.470e-1693.02T-complex protein 1 subunit epsilon n=2 Tax=Ectoca... [more]
A0A7S0SVM0_9STRA1.810e-1688.37Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
B7G2T8_PHATC3.750e-1688.37T-complex protein 1 subunit epsilon n=1 Tax=Phaeod... [more]
A0A1E7FRJ6_9STRA3.760e-1688.37T-complex protein 1 subunit epsilon n=3 Tax=Bacill... [more]
A0A835ZI55_9STRA7.000e-1688.37T-complex protein 1 subunit epsilon n=1 Tax=Tribon... [more]
A0A7S2SPL3_9STRA7.330e-1688.37Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A261BK46_9PELO9.180e-1681.40Uncharacterized protein (Fragment) n=3 Tax=Caenorh... [more]
A0A7S3PR08_9STRA9.560e-1688.37T-complex protein 1 subunit epsilon n=3 Tax=Aplano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7274contigC-tenellus_contig7274:4809..4961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI32
Preferred nameCCT5
PFAMsCpn60_TCP1
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K09497
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005886,GO:0005911,GO:0006457,GO:0006458,GO:0008150,GO:0009506,GO:0009987,GO:0016020,GO:0030054,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0055044,GO:0061077,GO:0071944,GO:0101031
Exons1
Evalue2.4e-17
EggNOG OGsCOG0459@1|root,KOG0357@2759|Eukaryota
Descriptionunfolded protein binding
Cds size153
COG categoryO
BRITEko00000,ko03036,ko03110,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790025.2460032-CDS-C-tenellus_contig7274:4808..49611680790025.2460032-CDS-C-tenellus_contig7274:4808..4961Choristocarpus tenellus KU2346CDSC-tenellus_contig7274 4809..4961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7274.3.1prot_C-tenellus_contig7274.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7274 4809..4961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7274.3.1

>prot_C-tenellus_contig7274.3.1 ID=prot_C-tenellus_contig7274.3.1|Name=mRNA_C-tenellus_contig7274.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=51bp
MLVCAILFQSNILAARSVSNILRSSLGPKGMDKMLVSPDGDVTITNDGAT
I
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mRNA from alignment at C-tenellus_contig7274:4809..4961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7274.3.1 ID=mRNA_C-tenellus_contig7274.3.1|Name=mRNA_C-tenellus_contig7274.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=153bp|location=Sequence derived from alignment at C-tenellus_contig7274:4809..4961+ (Choristocarpus tenellus KU2346)
ATGCTGGTGTGCGCAATCCTGTTCCAGTCCAATATCCTTGCTGCACGGAG
TGTGAGCAACATCCTTCGGTCGTCTCTAGGTCCAAAGGGTATGGATAAGA
TGCTCGTCAGTCCAGATGGCGATGTAACCATCACAAACGATGGCGCCACA
ATC
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Coding sequence (CDS) from alignment at C-tenellus_contig7274:4809..4961+

>mRNA_C-tenellus_contig7274.3.1 ID=mRNA_C-tenellus_contig7274.3.1|Name=mRNA_C-tenellus_contig7274.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=153bp|location=Sequence derived from alignment at C-tenellus_contig7274:4809..4961+ (Choristocarpus tenellus KU2346)
ATGCTGGTGTGCGCAATCCTGTTCCAGTCCAATATCCTTGCTGCACGGAG
TGTGAGCAACATCCTTCGGTCGTCTCTAGGTCCAAAGGGTATGGATAAGA
TGCTCGTCAGTCCAGATGGCGATGTAACCATCACAAACGATGGCGCCACA
ATC
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