mRNA_C-tenellus_contig7273.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7273.3.1
Unique NamemRNA_C-tenellus_contig7273.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7273.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7273contigC-tenellus_contig7273:5662..6588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LKL4
Model size579
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.54e-05
EggNOG OGs28Z2M@1|root,2R5WT@2759|Eukaryota
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790025.1880019-UTR-C-tenellus_contig7273:5661..56871680790025.1880019-UTR-C-tenellus_contig7273:5661..5687Choristocarpus tenellus KU2346UTRC-tenellus_contig7273 5662..5687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790025.2004592-CDS-C-tenellus_contig7273:5687..58601680790025.2004592-CDS-C-tenellus_contig7273:5687..5860Choristocarpus tenellus KU2346CDSC-tenellus_contig7273 5688..5860 +
1680790025.214259-CDS-C-tenellus_contig7273:6209..65881680790025.214259-CDS-C-tenellus_contig7273:6209..6588Choristocarpus tenellus KU2346CDSC-tenellus_contig7273 6210..6588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7273.3.1prot_C-tenellus_contig7273.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7273 5688..6588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7273.3.1

>prot_C-tenellus_contig7273.3.1 ID=prot_C-tenellus_contig7273.3.1|Name=mRNA_C-tenellus_contig7273.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=184bp
MNDWEMPLSKPFHSEHISRVDGGLEIKNKTEQDEANNTPSVSGKQSSPMI
HIPVNALRVYSFLATETPKNGVCAGRGGLQTFINLQEKIKVRLVLCSDAG
KKQYQPGRKGFKAHGGASAVGEACTGAENQSTCAEGSWRSRFGKEGGQGH
DRNLTDEGGGSEELFVGETNLGLEQFRNNCIQKV
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mRNA from alignment at C-tenellus_contig7273:5662..6588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7273.3.1 ID=mRNA_C-tenellus_contig7273.3.1|Name=mRNA_C-tenellus_contig7273.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=927bp|location=Sequence derived from alignment at C-tenellus_contig7273:5662..6588+ (Choristocarpus tenellus KU2346)
CCAAACACCCCCCTGCTACCATACACATGAATGACTGGGAGATGCCCTTG
TCAAAACCATTCCACTCTGAACACATCAGCAGAGTTGATGGTGGACTGGA
GATCAAGAACAAGACTGAACAAGATGAAGCAAACAACACTCCATCTGTGT
CTGGAAAACAGTCTTCCCCCATGATTCATATCCCCGTCAATGCACTTAGG
TGAAACTGTGTGTGTGGGGTAACAAACCCCATTATTCAGCATGCCAGGAG
ATTGCTACATAAATGGGGCGGGGCTTTACTTCTAGCCCAGGGTAGCTGGC
AACATTGTGCATTGTTCTTGAGCATCTCAAAGACACAAAAAATGCTACCA
TCAGTCAAGGTTGCTATTGTTTTTGAGGGTGTGCATTTCTCATGCTTCCC
CCCTGCATGCACAAAACCCTCCTTCAACCCTCACCTCTTTGTGCGAAACA
GTCATCAACTTGTTCATATGGTATCCATGCCGTCTGAACAAACATCTCTC
CTCTTGTTGACTCAACCCACTACTATTTCCTGTTGGGGGACAACAAAGGG
TATACTCTTTTTTGGCTACAGAAACGCCAAAGAACGGAGTGTGTGCCGGC
AGGGGCGGTCTCCAAACGTTTATCAACCTCCAGGAGAAGATCAAAGTCAG
ACTTGTGCTTTGTTCTGATGCTGGAAAAAAGCAATACCAGCCTGGACGTA
AGGGATTCAAGGCACATGGTGGTGCTAGTGCTGTAGGGGAAGCTTGCACG
GGAGCTGAAAATCAATCCACCTGTGCTGAAGGAAGTTGGAGGTCCAGGTT
CGGCAAGGAGGGTGGACAGGGACATGATAGGAACCTTACAGACGAGGGTG
GTGGTTCAGAGGAGCTGTTTGTGGGAGAGACAAATTTAGGCCTGGAACAG
TTTCGGAACAACTGCATCCAAAAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig7273:5662..6588+

>mRNA_C-tenellus_contig7273.3.1 ID=mRNA_C-tenellus_contig7273.3.1|Name=mRNA_C-tenellus_contig7273.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=552bp|location=Sequence derived from alignment at C-tenellus_contig7273:5662..6588+ (Choristocarpus tenellus KU2346)
ATGAATGACTGGGAGATGCCCTTGTCAAAACCATTCCACTCTGAACACAT
CAGCAGAGTTGATGGTGGACTGGAGATCAAGAACAAGACTGAACAAGATG
AAGCAAACAACACTCCATCTGTGTCTGGAAAACAGTCTTCCCCCATGATT
CATATCCCCGTCAATGCACTTAGGGTATACTCTTTTTTGGCTACAGAAAC
GCCAAAGAACGGAGTGTGTGCCGGCAGGGGCGGTCTCCAAACGTTTATCA
ACCTCCAGGAGAAGATCAAAGTCAGACTTGTGCTTTGTTCTGATGCTGGA
AAAAAGCAATACCAGCCTGGACGTAAGGGATTCAAGGCACATGGTGGTGC
TAGTGCTGTAGGGGAAGCTTGCACGGGAGCTGAAAATCAATCCACCTGTG
CTGAAGGAAGTTGGAGGTCCAGGTTCGGCAAGGAGGGTGGACAGGGACAT
GATAGGAACCTTACAGACGAGGGTGGTGGTTCAGAGGAGCTGTTTGTGGG
AGAGACAAATTTAGGCCTGGAACAGTTTCGGAACAACTGCATCCAAAAGG
TG
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