mRNA_C-tenellus_contig7271.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7271.1.1
Unique NamemRNA_C-tenellus_contig7271.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: D8LNT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT6_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.020e-26
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 3 
Query:  285 STMLGYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLPRYQ 500
            S +LGY YPALASAK AVQ+D  AFTQWMTYWVV+SVFA+VE F+D FVSW+P Y+EAKIV I+WL +PRYQ
Sbjct:   12 SVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEVFVDFFVSWVPFYYEAKIVLIVWLAMPRYQ 83
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: UPI00023E8597 (receptor expression-enhancing protein 2-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00023E8597)

HSP 1 Score: 79.0 bits (193), Expect = 1.450e-14
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:  291 MLGYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLPRYQ 500
            ++G  YPA  S KA   +D   +T WM YW+V ++F   ETF D+F+SWLP Y+E KIV ++WL LP  Q
Sbjct:   14 IVGVLYPAYCSFKAVKYKDHREYTTWMMYWIVFAIFLTAETFSDVFLSWLPFYYEIKIVIVIWLALPYTQ 83
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: V3ZZ89_LOTGI (Receptor expression-enhancing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZZ89_LOTGI)

HSP 1 Score: 76.6 bits (187), Expect = 4.380e-14
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:  291 MLGYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLP 491
            + G  YPA AS KA   ++   + +WM YW+V ++F  VETF D+F+SWLP Y+E KIVF+LWL  P
Sbjct:   12 VFGTLYPAYASYKAVRTKNVKEYVKWMMYWIVFALFLCVETFSDVFISWLPFYYEVKIVFVLWLLSP 78
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: A0A1X7UU63_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UU63_AMPQE)

HSP 1 Score: 80.5 bits (197), Expect = 5.390e-14
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 3 
Query:  285 STMLGYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLPRYQ 500
            S ++G  YPA  S KA   +D   +T WM YW+V ++F   ETF D+F+SWLP Y+E KIV ++WL LP  Q
Sbjct:  264 SVIVGVLYPAYCSFKAVKYKDHREYTTWMMYWIVFAIFLTAETFSDVFLSWLPFYYEIKIVIVIWLALPYTQ 335
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: B7Q4Z7_IXOSC (Receptor expression-enhancing protein n=3 Tax=Ixodes TaxID=6944 RepID=B7Q4Z7_IXOSC)

HSP 1 Score: 76.6 bits (187), Expect = 7.020e-14
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:  297 GYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLP 491
            G  YPA AS KA   +D   + +WM YWVV ++F  VETF D+ +SWLP Y+E KI+F+LWL  P
Sbjct:   15 GMLYPAYASYKAVKNKDVREYMKWMMYWVVFALFTCVETFADILISWLPFYYEIKILFVLWLLSP 79
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: UPI001C38A5E6 (receptor expression-enhancing protein 1 isoform X2 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001C38A5E6)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-13
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:  297 GYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLP 491
            G  YPA AS KA   +D   + +WM YWVV ++F  VETF D+ +SWLP Y+E KI+F+LWL  P
Sbjct:   15 GMLYPAYASYKAVKNKDVREYMKWMMYWVVFALFTCVETFADILISWLPFYYEIKILFVLWLLSP 79
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: A0A7K9T7J5_9AVES (Receptor expression-enhancing protein (Fragment) n=1 Tax=Galbula dea TaxID=1109041 RepID=A0A7K9T7J5_9AVES)

HSP 1 Score: 76.3 bits (186), Expect = 1.400e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:  291 MLGYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLP 491
            ++G+AYPA  S KA    ++   TQW+TYWVV  VF++VE F D+F+SW PLY+  K VF+LW   P
Sbjct:   61 LIGFAYPAYVSIKAIESPNKDDDTQWLTYWVVYGVFSIVEFFSDIFLSWFPLYYVLKCVFLLWCMAP 127
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: C3ZZ30_BRAFL (Receptor expression-enhancing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZZ30_BRAFL)

HSP 1 Score: 74.7 bits (182), Expect = 1.600e-13
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:  291 MLGYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLP 491
            + G  YPA AS KA   ++   + +WM YW+V ++F  +ETF D+F+SW+P Y+E KIVF++WL  P
Sbjct:    9 LFGTLYPAYASYKAVKTKNVREYVKWMMYWIVFALFTCMETFADVFISWVPFYYEVKIVFVVWLLSP 75
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: A0A7S0YTQ7_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YTQ7_9CRYP)

HSP 1 Score: 73.9 bits (180), Expect = 2.650e-13
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:  291 MLGYAYPALASAKA--AVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLPR 494
            ++G  YPAL S KA  +  +D    TQW+TYWV+ S+F+ VE  LD+ + W+P+Y+E K+ F+LW+ LP+
Sbjct:   13 LVGVIYPALMSYKAIKSTAKDTEDHTQWLTYWVIFSLFSTVEFLLDVIIVWIPIYYELKLCFVLWMALPQ 82
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BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Match: UPI001B88C313 (receptor expression-enhancing protein 1-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88C313)

HSP 1 Score: 77.0 bits (188), Expect = 3.120e-13
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 3 
Query:  291 MLGYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWLPLYFEAKIVFILWLTLPRYQVSD 509
            + G  YPA AS KA   ++   + +WM YW+V ++F  VETF D+F+SWLP Y+E KIVF+LWL  P  + S+
Sbjct:   13 VFGTLYPAYASYKAVRTKNVREYVKWMIYWIVFALFYCVETFADVFISWLPFYYEVKIVFVLWLLSPMTRGSN 85
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7271.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNT6_ECTSI1.020e-2673.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00023E85971.450e-1448.57receptor expression-enhancing protein 2-like n=1 T... [more]
V3ZZ89_LOTGI4.380e-1450.75Receptor expression-enhancing protein n=1 Tax=Lott... [more]
A0A1X7UU63_AMPQE5.390e-1448.61Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
B7Q4Z7_IXOSC7.020e-1452.31Receptor expression-enhancing protein n=3 Tax=Ixod... [more]
UPI001C38A5E61.260e-1352.31receptor expression-enhancing protein 1 isoform X2... [more]
A0A7K9T7J5_9AVES1.400e-1350.75Receptor expression-enhancing protein (Fragment) n... [more]
C3ZZ30_BRAFL1.600e-1346.27Receptor expression-enhancing protein (Fragment) n... [more]
A0A7S0YTQ7_9CRYP2.650e-1345.71Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
UPI001B88C3133.120e-1347.95receptor expression-enhancing protein 1-like isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7271contigC-tenellus_contig7271:4903..6836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNT6
PFAMsTB2_DP1_HVA22
Model size671
Max annot lvl2759|Eukaryota
KEGG koko:K17279
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.05e-28
EggNOG OGsCOG5052@1|root,KOG1726@2759|Eukaryota
Descriptionmitotic nuclear envelope reassembly
Cds size363
COG categoryU
BRITEko00000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.828894-UTR-C-tenellus_contig7271:4902..51921680790024.828894-UTR-C-tenellus_contig7271:4902..5192Choristocarpus tenellus KU2346UTRC-tenellus_contig7271 4903..5192 +
1680790024.8837264-UTR-C-tenellus_contig7271:6818..68361680790024.8837264-UTR-C-tenellus_contig7271:6818..6836Choristocarpus tenellus KU2346UTRC-tenellus_contig7271 6819..6836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.8547137-CDS-C-tenellus_contig7271:5192..52811680790024.8547137-CDS-C-tenellus_contig7271:5192..5281Choristocarpus tenellus KU2346CDSC-tenellus_contig7271 5193..5281 +
1680790024.864451-CDS-C-tenellus_contig7271:5811..58681680790024.864451-CDS-C-tenellus_contig7271:5811..5868Choristocarpus tenellus KU2346CDSC-tenellus_contig7271 5812..5868 +
1680790024.8735397-CDS-C-tenellus_contig7271:6601..68181680790024.8735397-CDS-C-tenellus_contig7271:6601..6818Choristocarpus tenellus KU2346CDSC-tenellus_contig7271 6602..6818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7271.1.1prot_C-tenellus_contig7271.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7271 5193..6818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7271.1.1

>prot_C-tenellus_contig7271.1.1 ID=prot_C-tenellus_contig7271.1.1|Name=mRNA_C-tenellus_contig7271.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=121bp
MLGYAYPALASAKAAVQEDETAFTQWMTYWVVISVFAVVETFLDLFVSWL
PLYFEAKIVFILWLTLPRYQVSDSKETQSICGEGGVYTTASILTPNQEKR
TYIIHLTYTTKSPKSRDMKN*
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mRNA from alignment at C-tenellus_contig7271:4903..6836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7271.1.1 ID=mRNA_C-tenellus_contig7271.1.1|Name=mRNA_C-tenellus_contig7271.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1934bp|location=Sequence derived from alignment at C-tenellus_contig7271:4903..6836+ (Choristocarpus tenellus KU2346)
CTTCCGTAAACATATTTTACAGTCGCTTGTAACTCTGCCTTACTCACTTT
GAGCATGTGAAGGTCAAGTGGAAATATGCTCTCTTTTTGGAAGTACCAAA
TCGTTGGAACCTTCTTGATACGTTACCTTCGGAAAGACGAATACTTGCGT
CTGAGTCCTACCACCTAAGCCTTGCCGATGGACTTTTAAAATGAAGACCG
CTATTGTAAGCTTTTTCTCTCTATATATATATATCTGTGTGGGTGGGTAC
CCTGATTCCCTTTTCCCTACATTTTCTCTTGCCCAGCACTATGTTGGGGT
ACGCCTACCCCGCCCTTGCTAGTGCCAAGGCCGCTGTGCAAGAGGATGAG
ACAGCGTTTACACAGTGGATGACGTACTGGTGAGTCGTATTGTTGTTGTC
GAAGTGTGATCGCAAGGTGATCACAATTACAAGGATTGAGCTCTGTCGTA
ATCAGTCGAAAAATGTCTCATGTTCCGTCCAGCAAGATCGAAGTTAAGCC
GATGCGCGCCAGGTCATTCTGAGTGGATTGCGGTAGTCCATGAGTCTGCT
TGCGATGGAAAATGAAAAAAAACTCCTTGTATGCGACAATTGTACATGTT
AGATGGTTCGTACTCACAGGACTCCAGGAACATTCGAGAGGGTTGGAGGC
AAAGCTTGTTCCCACGCGTTGTGCTTGCTGACGGACTTCAAATATATATA
TATATATATATATCCCCGATAGAGAAGAGGGGGATGATTGTAAGGACTAG
CGCAGGATGGGTAGTGTCGCCCCCTGCTTCAACACAATACTGGAGGAATG
AGGTTCTGCAGCGCAACATCTGACTGACAAACACCTTTACTCCGTCATGT
TAACACCCACCTCCCCCTTTCATGATTGCCTTCGCTCACTTTCGACCCGT
TATGGGAAGGGTGGTGATTTCAGTGTTTGCGGTGGTGGAGACCTTTCTGG
ACCTCTTTGTTTCGTGGTGAGTTCTTGGTCCATGATTGACAATTCGTCAT
ATTGGGTAGATCTTTATCGAAAGTACGAAGTTCAATGTTTGTTCTCCACC
TACTCTGACGTTTTCAATGCGTATGGGAGTCTATGGATATTGTTTCCGCA
GGGCAGTGCACAGAAAATAATGTTTGTATACCTGTCCCCATATCCACCTT
GGAAAGCCTCGTACAGATTCACTTCATACATCGATACAAACTAGGAGACG
TTCAATTGGGCAAGAACAGAATAACATAATGTAAAACTGCCACTTGACGG
AAATTTTTTTTTTTTTATAAAATTCACCTGTTGATGTGCCTTGAACTATT
TCCATTCTTGTGAATGTGCTGATCATGTTACGTCATACTGGAAACGTTTG
AAACACTGCAAGAAGGATGAACACAGGAGAGAGGAGCCATGAACTTCTTG
ATGGTGTATGCATATGCTATGCCTTACGTCCTTTTATTCTATTAGAACAA
ACTCGCACGTTCCATGCACTCTCCACGTCCGTGTTACATGTTCAAGTGTC
GCGTCTCCTAGAACAGTGGGCGATCCACAAAGCATAACACCGGTGTTTGT
ACATCCATGCGCACAAACACACACACAATACCCATCTCACACCACTCTTC
CTCCTCAATCAACTTGCTGGATATACTTGCGTGGATGGCGGATGGATGGA
TGGCTTGATGGATGGGCACTCCCATAACTTTGTTGCTCTTTGTCGCCAGG
CTTCCCTTGTATTTTGAAGCCAAAATTGTGTTCATTTTGTGGCTTACACT
GCCGAGGTATCAGGTCAGTGACAGCAAGGAGACCCAAAGTATCTGTGGGG
AGGGGGGGGTCTACACCACGGCGTCCATTTTGACCCCAAACCAGGAAAAG
CGCACCTACATTATCCATCTGACGTATACAACCAAATCACCCAAAAGCCG
CGATATGAAAAATTGACCCTCAATGGACAGCCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7271:4903..6836+

>mRNA_C-tenellus_contig7271.1.1 ID=mRNA_C-tenellus_contig7271.1.1|Name=mRNA_C-tenellus_contig7271.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=363bp|location=Sequence derived from alignment at C-tenellus_contig7271:4903..6836+ (Choristocarpus tenellus KU2346)
ATGTTGGGGTACGCCTACCCCGCCCTTGCTAGTGCCAAGGCCGCTGTGCA
AGAGGATGAGACAGCGTTTACACAGTGGATGACGTACTGGGTGGTGATTT
CAGTGTTTGCGGTGGTGGAGACCTTTCTGGACCTCTTTGTTTCGTGGCTT
CCCTTGTATTTTGAAGCCAAAATTGTGTTCATTTTGTGGCTTACACTGCC
GAGGTATCAGGTCAGTGACAGCAAGGAGACCCAAAGTATCTGTGGGGAGG
GGGGGGTCTACACCACGGCGTCCATTTTGACCCCAAACCAGGAAAAGCGC
ACCTACATTATCCATCTGACGTATACAACCAAATCACCCAAAAGCCGCGA
TATGAAAAATTGA
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