mRNA_C-tenellus_contig727.9.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig727.9.1
Unique NamemRNA_C-tenellus_contig727.9.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A6H5KWJ1_9PHAE (Methyltranfer_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 9.520e-9
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHS 114
            P  I + DY KLMEGTG+LEQVE+ DWAE+T PTWR S
Sbjct:  367 PHFISINDYAKLMEGTGQLEQVETDDWAEQTTPTWRLS 404
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A8J9WID7_9CHLO (2-methyl-6-phytyl-1,4-hydroquinone methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WID7_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 1.300e-8
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHS 114
            P  + VQ+YG+L+EGTG+LE VE  DW  +TLPTWRHS
Sbjct:  325 PYFVSVQEYGRLLEGTGKLESVEIDDWTPQTLPTWRHS 362
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A7S2UUJ1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUJ1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.540e-8
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHS 114
            P  I  +DYG+L+EGTG +EQV + DWA+ETLP+WRH+
Sbjct:  343 PFFISYEDYGRLVEGTGTMEQVVTDDWAKETLPSWRHA 380
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: I0Z6S8_COCSC (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z6S8_COCSC)

HSP 1 Score: 56.2 bits (134), Expect = 6.150e-8
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHS 114
            P  + VQ+YG+L+EGTG++E V+  DW  +TLPTWRHS
Sbjct:  266 PYFVSVQEYGRLLEGTGKMESVDIDDWTPQTLPTWRHS 303
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A7S3HQH5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQH5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.480e-8
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHSGELVSGMLD 141
            P  I + DY KLM+GTG L+ VE+ADW  +TLP+W HS  +  G+ D
Sbjct:   70 PHFISISDYAKLMQGTGRLQNVETADWTPQTLPSWLHS--IWVGVFD 114
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A7S3XPM8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPM8_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 1.160e-7
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHS 114
            P  I ++DY KL+EGTG++E+V SA+WA+ET+P+WRH+
Sbjct:  315 PHFISIEDYVKLIEGTGKMEKVGSANWADETIPSWRHA 352
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A7S1EXV6_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1EXV6_NOCSC)

HSP 1 Score: 53.9 bits (128), Expect = 4.070e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHS 114
            P  I +  Y  LMEGTG LE V++ADW E+TLP+WRHS
Sbjct:  337 PFFISINSYKDLMEGTGMLEPVKTADWTEQTLPSWRHS 374
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A0D2MTP6_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MTP6_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 4.160e-7
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHSGELVSGMLD 141
            P  I +Q++ +LMEGTG++E V + DW  +TLP+WRHS   + G+LD
Sbjct:   79 PFFISIQEFCRLMEGTGKMEAVGAEDWTPQTLPSWRHSN--LVGVLD 123
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A7S0VVD3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VVD3_9CRYP)

HSP 1 Score: 51.6 bits (122), Expect = 4.750e-7
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHS 114
            P  + +++YG+LM+GTG+LEQV   +W +ET+  WRHS
Sbjct:   21 PYFVSIEEYGRLMKGTGKLEQVREENWVKETITAWRHS 58
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BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Match: A0A0M0K741_9EUKA (Methyltranfer_dom domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K741_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 1.020e-6
Identity = 19/38 (50.00%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 PMLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHS 114
            P  I +++YG++M+ TG+L+++ +ADWA ET+P WRHS
Sbjct:  245 PYFISIEEYGRIMQRTGKLQKIVTADWATETIPAWRHS 282
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig727.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWJ1_9PHAE9.520e-968.42Methyltranfer_dom domain-containing protein n=2 Ta... [more]
A0A8J9WID7_9CHLO1.300e-863.162-methyl-6-phytyl-1,4-hydroquinone methyltransfera... [more]
A0A7S2UUJ1_9STRA4.540e-860.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I0Z6S8_COCSC6.150e-857.89S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S3HQH5_9STRA9.480e-851.06Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3XPM8_HETAK1.160e-757.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1EXV6_NOCSC4.070e-760.53Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A0D2MTP6_9CHLO4.160e-748.94Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7S0VVD3_9CRYP4.750e-750.00Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A0M0K741_9EUKA1.020e-650.00Methyltranfer_dom domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig727contigC-tenellus_contig727:16828..16971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUJ0
PFAMsCMAS,Methyltransf_11,Methyltransf_25,Methyltransf_31
Model size144
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC01662
KEGG koko:K05928,ko:K18534
KEGG ReactionR07236,R07501,R07504,R10491,R10492,R10709,R10710
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.76e-09
EggNOG OGsCOG0500@1|root,KOG1269@2759|Eukaryota
Ec32 ortholog descriptionGamma-tocopherol methyltransferase
Ec32 orthologEc-18_000910.1
EC2.1.1.295,2.1.1.95
Descriptionsterol 24-C-methyltransferase activity
Cds size141
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.7215862-CDS-C-tenellus_contig727:16827..169681680790024.7215862-CDS-C-tenellus_contig727:16827..16968Choristocarpus tenellus KU2346CDSC-tenellus_contig727 16828..16968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.7337248-UTR-C-tenellus_contig727:16968..169711680790024.7337248-UTR-C-tenellus_contig727:16968..16971Choristocarpus tenellus KU2346UTRC-tenellus_contig727 16969..16971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig727.9.1prot_C-tenellus_contig727.9.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig727 16828..16968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig727.9.1

>prot_C-tenellus_contig727.9.1 ID=prot_C-tenellus_contig727.9.1|Name=mRNA_C-tenellus_contig727.9.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=47bp
MLILVQDYGKLMEGTGELEQVESADWAEETLPTWRHSGELVSGMLD*
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mRNA from alignment at C-tenellus_contig727:16828..16971-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig727.9.1 ID=mRNA_C-tenellus_contig727.9.1|Name=mRNA_C-tenellus_contig727.9.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=144bp|location=Sequence derived from alignment at C-tenellus_contig727:16828..16971- (Choristocarpus tenellus KU2346)
CCTATGCTAATTTTGGTACAGGATTATGGCAAGCTGATGGAGGGTACAGG
CGAGTTAGAGCAGGTTGAAAGTGCAGACTGGGCAGAGGAGACTCTCCCTA
CCTGGAGGCACTCAGGCGAGTTAGTCTCGGGCATGTTAGATTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig727:16828..16971-

>mRNA_C-tenellus_contig727.9.1 ID=mRNA_C-tenellus_contig727.9.1|Name=mRNA_C-tenellus_contig727.9.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=141bp|location=Sequence derived from alignment at C-tenellus_contig727:16828..16971- (Choristocarpus tenellus KU2346)
ATGCTAATTTTGGTACAGGATTATGGCAAGCTGATGGAGGGTACAGGCGA
GTTAGAGCAGGTTGAAAGTGCAGACTGGGCAGAGGAGACTCTCCCTACCT
GGAGGCACTCAGGCGAGTTAGTCTCGGGCATGTTAGATTAG
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