mRNA_C-tenellus_contig7256.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7256.4.1
Unique NamemRNA_C-tenellus_contig7256.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7256.4.1 vs. uniprot
Match: A0A6H5KVS1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS1_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.440e-46
Identity = 85/153 (55.56%), Postives = 107/153 (69.93%), Query Frame = 1 
Query:    4 MGSFSAAGGIKSGEKMVTAVEAPDTATALFLAGFKSFAKPGGSDFAVNARIDDDPDLRSRWCQANVRFGTFTIRTGDAYYVPESALHEFMNHTACLSVAWNLLPPPSNCQDAWRMAAESIEEAKWYLSSTPNRLRGVVEHAPKHLLDSRYQEW 462
            MGSF+A GG+K+GEK VTA E+ D ATAL +A FK+FAKPGGS + VN RIDDD  LR+R+ +A VR+ TF IR G+AY VP   LHEFMN   CLSVAWN++P P+NC+ A RMA  S+EEA+  L    +R    +EHAP   +  R+  W
Sbjct:    1 MGSFTAIGGLKAGEKSVTAFESEDCATALAVAKFKAFAKPGGSSYVVNDRIDDDATLRNRFHRAGVRYRTFPIREGEAYLVPSGCLHEFMNVIPCLSVAWNIMPHPANCEVAMRMAEASVEEAQAELGVNTDRSASAIEHAPPESMRERHAAW 153
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BLAST of mRNA_C-tenellus_contig7256.4.1 vs. uniprot
Match: D7FUF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.670e-46
Identity = 86/154 (55.84%), Postives = 106/154 (68.83%), Query Frame = 1 
Query:    1 GMGSFSAAGGIKSGEKMVTAVEAPDTATALFLAGFKSFAKPGGSDFAVNARIDDDPDLRSRWCQANVRFGTFTIRTGDAYYVPESALHEFMNHTACLSVAWNLLPPPSNCQDAWRMAAESIEEAKWYLSSTPNRLRGVVEHAPKHLLDSRYQEW 462
            GMGSF+A GG+K+GEK VTA E+ D ATAL +A FK+FAKPGGS + VN RIDDD  LR+R  +A VR+ TF IR G+AY VP   LHEFMN   CLSVAWN++P P+NC+ A RMA  S EEA+  L    +R    +EHAP   +  R+  W
Sbjct:   18 GMGSFTAIGGLKAGEKSVTAFESEDCATALAVAKFKAFAKPGGSSYVVNDRIDDDATLRNRLHRAGVRYRTFPIREGEAYLVPSGCLHEFMNVIPCLSVAWNIMPHPANCEVAMRMAEASAEEAQAELGVNTDRSASAIEHAPPESMRERHAAW 171
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BLAST of mRNA_C-tenellus_contig7256.4.1 vs. uniprot
Match: L1K4C4_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K4C4_GUITC)

HSP 1 Score: 127 bits (320), Expect = 3.000e-31
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 1 
Query:    1 GMGSFSAAGGIKSGEKMVTAVEAPDTATALFLAGFKSFAKPGGSDFAVNARID-------DDPDLRSRWCQANVRFGTFTIRTGDAYYVPESALHEFMNHTACLSVAWNLLPP--PSNCQDAWR--MAAESIEEAKWYLSSTPNRLRGVVEHAPKHLL 441
            GMGS  A GG+K G+K+VTAVEA D + AL +AGFKS+AKPGGS F  N  +D       +   L+  W  ++VR+GTF I  GDAY +P    HEF+N    LS+AWN+LP    S+  + W   +  +++ + +   S +P+R+   ++HAP  LL
Sbjct:  278 GMGSLVAIGGLKCGKKLVTAVEACDASLALKIAGFKSYAKPGGSSFLTNDPVDRSFSGEEESCSLKDLWTMSHVRWGTFEISAGDAYVIPAGMPHEFLNQEPSLSIAWNILPSCEQSSASEPWHFLLLLQALHDVETDFSGSPDRMMSAIDHAPIPLL 435
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7256.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVS1_9PHAE1.440e-4655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUF1_ECTSI2.670e-4655.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L1K4C4_GUITC3.000e-3142.41Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7256contigC-tenellus_contig7256:1328..2184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FUF1
Model size462
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.98e-46
EggNOG OGs2EM7G@1|root,2SQY3@2759|Eukaryota
Cds size459
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790023.1443565-UTR-C-tenellus_contig7256:1327..13301680790023.1443565-UTR-C-tenellus_contig7256:1327..1330Choristocarpus tenellus KU2346UTRC-tenellus_contig7256 1328..1330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790023.1597552-CDS-C-tenellus_contig7256:1330..14681680790023.1597552-CDS-C-tenellus_contig7256:1330..1468Choristocarpus tenellus KU2346CDSC-tenellus_contig7256 1331..1468 +
1680790023.1738982-CDS-C-tenellus_contig7256:1863..21841680790023.1738982-CDS-C-tenellus_contig7256:1863..2184Choristocarpus tenellus KU2346CDSC-tenellus_contig7256 1864..2184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7256.4.1prot_C-tenellus_contig7256.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7256 1331..2184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7256.4.1

>prot_C-tenellus_contig7256.4.1 ID=prot_C-tenellus_contig7256.4.1|Name=mRNA_C-tenellus_contig7256.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=153bp
MGSFSAAGGIKSGEKMVTAVEAPDTATALFLAGFKSFAKPGGSDFAVNAR
IDDDPDLRSRWCQANVRFGTFTIRTGDAYYVPESALHEFMNHTACLSVAW
NLLPPPSNCQDAWRMAAESIEEAKWYLSSTPNRLRGVVEHAPKHLLDSRY
QEW
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mRNA from alignment at C-tenellus_contig7256:1328..2184+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7256.4.1 ID=mRNA_C-tenellus_contig7256.4.1|Name=mRNA_C-tenellus_contig7256.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=857bp|location=Sequence derived from alignment at C-tenellus_contig7256:1328..2184+ (Choristocarpus tenellus KU2346)
GGAATGGGATCCTTTTCTGCTGCTGGAGGAATAAAATCTGGAGAGAAGAT
GGTGACTGCAGTTGAAGCCCCAGACACAGCTACTGCTCTGTTCCTGGCTG
GGTTCAAGTCCTTTGCCAAGCCTGGTGGTTCGGACTTTGCTGTGAGATGG
AGGGAGGGACTACTATTACTATCATTATTTTTATATTATGTTCGTTAATA
TTATAGATATTTTAGCTGCTATTACAAAAATAACTATTGTTGCTACCATT
GTTATTATTGCATGGTGGGGAAGAAGGAAGGAGAGGGGATTGGAATGGCA
CCAGCGGAAGATTATGGGGCTTGCATGTGACAGGTTTGATTCTAATCAAT
GGAAGTCATATTGTGATGGTAATCATATCGAATTTTTCCATTGGAATGAA
GATATCCTCTCTCCTGCAACCATTATTGTCCACAGATCCACCTCCACTAA
ACCCCCAACCCCTCAAAAATCCCAACCTTCATCCTAGCCTCCTTCCCACA
GTAACACCCCTCCCTAACCACACCCATTATGCATAGGTTAATGCCCGCAT
TGATGATGACCCCGACCTGAGGTCTAGGTGGTGTCAAGCCAATGTCAGGT
TCGGAACCTTCACAATCCGTACAGGGGACGCCTACTATGTCCCCGAGTCT
GCTTTGCACGAGTTCATGAACCATACTGCCTGCCTGAGTGTGGCCTGGAA
TCTGCTCCCCCCACCAAGTAACTGTCAGGATGCCTGGCGAATGGCAGCAG
AAAGCATTGAGGAGGCCAAGTGGTACCTGTCTTCCACCCCCAATCGACTA
AGAGGTGTCGTTGAGCACGCCCCCAAGCATCTCTTGGACAGTCGATACCA
GGAGTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7256:1328..2184+

>mRNA_C-tenellus_contig7256.4.1 ID=mRNA_C-tenellus_contig7256.4.1|Name=mRNA_C-tenellus_contig7256.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=459bp|location=Sequence derived from alignment at C-tenellus_contig7256:1328..2184+ (Choristocarpus tenellus KU2346)
ATGGGATCCTTTTCTGCTGCTGGAGGAATAAAATCTGGAGAGAAGATGGT
GACTGCAGTTGAAGCCCCAGACACAGCTACTGCTCTGTTCCTGGCTGGGT
TCAAGTCCTTTGCCAAGCCTGGTGGTTCGGACTTTGCTGTTAATGCCCGC
ATTGATGATGACCCCGACCTGAGGTCTAGGTGGTGTCAAGCCAATGTCAG
GTTCGGAACCTTCACAATCCGTACAGGGGACGCCTACTATGTCCCCGAGT
CTGCTTTGCACGAGTTCATGAACCATACTGCCTGCCTGAGTGTGGCCTGG
AATCTGCTCCCCCCACCAAGTAACTGTCAGGATGCCTGGCGAATGGCAGC
AGAAAGCATTGAGGAGGCCAAGTGGTACCTGTCTTCCACCCCCAATCGAC
TAAGAGGTGTCGTTGAGCACGCCCCCAAGCATCTCTTGGACAGTCGATAC
CAGGAGTGG
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