mRNA_C-tenellus_contig7248.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7248.1.2
Unique NamemRNA_C-tenellus_contig7248.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: D8LL92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL92_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 9.700e-65
Identity = 117/253 (46.25%), Postives = 159/253 (62.85%), Query Frame = 2
Query:  230 EMLPIASVQRFPMWIVGETEK----GQKTLTGVPQSNDQVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSKGGHSWRNRGMNSFPVAHSWQHIGGTLGGQLTLSMYASRNVKEGVGSSMWYAIEEKRGIADAITAIVGALADPPEGVEIGEGFHFLVAQV--PGAVSSPTPV------NGQVRIFLTDFDSPSGLLEVEDSDG------AELSMSVVEVASAAESDYLPDVYKALY 934
            + LP+AS   FP+W +   E+    G+K +T VP  N ++GWV+P S++ELW+P GSP P M L LGML+KDG PRY+MP +D+ VSKGG  WRNRG+NS PVAH+W+ +     G + LS YA   V+     SMW AI EK  + DA T IV  LADPPE ++IG GFH LVA+V  PG+    + V       G+VR+FL+D   P+ LL++E+         A L   VV VA+  ES++LP+VY+  +
Sbjct:   74 QRLPVASASSFPLWFIDGDEQVDDAGRKHVTQVPGPNAELGWVNPRSYSELWVPEGSPAPAMKLCLGMLMKDGVPRYVMPMVDLVVSKGGRKWRNRGLNSVPVAHTWEPVERAAAGSVFLSAYAEERVEGSETDSMWGAIAEKLPVTDAFTDIVSVLADPPEELDIGSGFHVLVAEVAVPGSGPGGSSVVAAARDGGRVRVFLSDVSEPADLLDLEEMGKGGIRGVAALGFDVVSVANGGESEFLPEVYRPFF 326          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: A0A6V1VC31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VC31_HETAK)

HSP 1 Score: 177 bits (448), Expect = 4.730e-47
Identity = 100/253 (39.53%), Postives = 150/253 (59.29%), Query Frame = 2
Query:  197 RVPVSLQGS-RSEMLPIASVQRFPMWIVGETEKGQKTLTGVPQSNDQVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSKGGHSWRNRGMNSFPVAHSWQHIGGTLGGQLTLSMYASRNVKEGVGSSMW--YAIEEKRGIADAITAIVGALADPPEGVEIGEGFHFLVAQVPGAVSSPTPVNGQ-VRIFLTDFDSPSGLLEVED---SDGAELSMSVVEVASAAESDYLPDVYKALY 934
            R  +S+ GS R E LP+ S   +P+W++ E E G   +   P+      WVDP SF++LWIP  SP P +  +L +L+KDGNPRY++P +D  + +GG  WRNRGM +FP+AH WQ         L +S+Y ++ + + +  S W  +A  E+ G   A+ A++  + + P   EI  GFHF+ A +P   ++P P N Q +R+FL D + P  LLE+ED   + G  L + V E+A A ES Y+PDVY+ L+
Sbjct:   47 RQSISILGSGRMETLPL-SYASYPVWMM-EPEGGLARVPDAPEEEGGAAWVDPFSFSDLWIPMDSPQPMLRPTLMVLLKDGNPRYVLPGLDTFLEQGGRRWRNRGMRTFPMAHVWQLFLAVPPEFLKISVYTNQKIPDTINDS-WEKFADCEELGAVGALDAVLALVGEGPP--EIKNGFHFVAAPLP-VPAAPIPQNCQRIRVFLNDIEDPIRLLELEDGAETGGGVLDVEVTEIAPAGESQYIPDVYRQLF 293          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: A0A836CL77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL77_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.510e-44
Identity = 105/291 (36.08%), Postives = 149/291 (51.20%), Query Frame = 2
Query:  212 LQGSRSEMLPIASVQRFPMWIVG-ETEKGQKTLTGVP-QSNDQVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVS-------------------------------VSKGGHSWRNRGMNSFPVAHSWQHIGGTLGGQLTLSMYASRNVKE----------------GVGSSMWYAIEEKRGIADAITAIVGALADPPEGVEIGEGFHFLVAQVPGAVSSPTPVNG-QVRIFLTDFDSPSGLLEVEDSDGAELSMSVVEVASAAESDYLPDVYKALY 934
            LQG   E LP   V  FP+W++  +T K    L+ VP Q++    WV+P S   LW+P GS  P  T+ + ML+KDG PRYL P +D                                 V++GG +WRNRG+ S  +AHSWQ         L+LS Y    V +                G  +  W+A+ E   +  A+  ++G +ADPP   E+ +G   LVA V GA   P P +G ++R+FL+D+ +P  LLEVE + GA+L + V  VASAA+S+YLPD+Y+ LY
Sbjct:    8 LQGPVIEQLPAGLVTSFPIWMLDPDTSK----LSRVPDQADGSQSWVEPRSCAALWVPEGSTVPTATVGVAMLVKDGRPRYLFPHLDTVXXXXXXXXXXXXPRPSLXXXXXXXXXXXXXVVARGGRAWRNRGVASVALAHSWQQFAHVPVQDLSLSAYVGAPVPQEEGXXXXXXXXXXXXXGAKTDAWHAVAEGVEVEAAVLQLMGVIADPP--AELNDGISILVAPVKGAAPFPLPPDGSKIRVFLSDYPAPVRLLEVETTRGAQLEVRVERVASAAKSEYLPDIYRPLY 292          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: A0A6U1NKJ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NKJ8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.100e-39
Identity = 86/255 (33.73%), Postives = 141/255 (55.29%), Query Frame = 2
Query:  203 PVSLQGSRSEMLPIASVQRFPMWIVGETEKGQKT---LTGVPQSND---QVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSKGGHSWRNRGMNSFPVAHSWQHIGGTLG--GQLTLSMYASRNVKEGVGSS-MWYAIEEKRGIADAITAIVGALADPPEGVEIGEGFHFLVAQVPGAVSSPTPVNGQVRIFLTDFDSPSGLLEVED--SDGAELSMSVVEVASAAESDYLPDVYKALY 934
            P  ++ +  +MLP+     +P+W + +T     +   L+ VP ++    + G+VDP S++  W+P  SP   +  ++  ++KDG PRY+MP +D++  K G  WRNRG+NS P+A  W+    T     +LTLS++A   V+   G++  W  I EK  + D +  +V  +ADPPE  EI  GFH L+  +             +R F+TD+  P  +LE+    SDG+EL + + ++ SA +S++LP VY  LY
Sbjct:   58 PSMIKITGGDMLPVGYTSTWPVWALEDTPSDGSSNCRLSAVPGTSSGEGETGFVDPRSYHLFWVPEDSPPLLLRPAVVAVLKDGKPRYIMPGLDITAEKAGQVWRNRGLNSLPLAGQWESFLDTALDLSKLTLSVFARHPVEGEEGNTNAWTTIAEKVNLLDTLDRLVAIMADPPE--EISSGFHVLIMPIADTTLQVPSGTNNMRAFITDYPDPKRMLELPSMGSDGSELDIQIEKILSAGKSEFLPQVYAPLY 310          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: A0A7S2MPJ3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MPJ3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.500e-32
Identity = 87/251 (34.66%), Postives = 135/251 (53.78%), Query Frame = 2
Query:  212 LQGSRSEMLPIASVQRFPMWIVGETEKGQKTLTGVPQSNDQVGWVDPLSFNELWIPSG-SPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSK-GGHSWRNRGMNSFPVAHSWQHIGGTLGGQLTLSMYASRNVK-----EGVGSSMWYAIEEKRGIADAITAIVGALADPPEGVEIGEGFHFLVAQVPGAVSSPTPVNGQ-VRIFLTDFDSPSGLLEVED--SDGAELSMSVVEVASAAESDYLPDVYKALY 934
            L+G  +E LP + V   P+ +VG        L  +  S  + GW +P S+++LWI  G +PTP   LS+  L+KDG+ R L P +DV+ ++  GH WRN G+ S+P++  W          L +S Y    V      E +    W  + EK  I DAI  ++   ADPP+ ++   GFH +   + G    P P +G+ +R++++D+  PS LLE+ +  S  A L +   +VAS AES++LP VY+ LY
Sbjct:   56 LKGVDTEHLPTSFVAAIPISVVG----ADSALYRISDSESE-GWCNPRSWSQLWISDGLNPTPSACLSVQALLKDGSLRCLFPGLDVTCTRPDGHVWRNLGLKSYPMSQVWLDYSTIPLASLRVSAYCRPVVTLDSDDEPINDRDWVTLTEKLDIQDAIMKVIELAADPPKELQ---GFHVVSVPIEGG-EVPVPSDGEALRVYMSDYPDPSKLLELPNVASGSAVLEVIAADVASGAESEFLPGVYRGLY 297          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: A0A8J5XAL8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XAL8_DIALT)

HSP 1 Score: 124 bits (312), Expect = 3.470e-28
Identity = 82/267 (30.71%), Postives = 134/267 (50.19%), Query Frame = 2
Query:  206 VSLQGSR--SEMLPIASVQRFPMWIVGETEKGQKTLTGVPQSND----QVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSKGGHSWRNRGMNSFPVAHSWQHIGGTLGGQLTLSMYASRNVK-----EGVGSSMWYAIEEKRGIADAITAIVGALADPPEGVEIGEGFHFLVAQVP----GAVSSPTPVNG-QVRIFLTDFDS-PSGLLEVEDS---DGAELSMSVVEVASAAESDYLPDVYKALYHDDQ 946
            VS+ G    +E LP++  Q +P+W       G+  +  V  S D    +  WVDPL+F ++W+P   P P   L+L +++KDG PRY+ P +D +V+  G  WRNRG+ S P+A +W     T   Q+ LS Y           +G   +    +     +  A       LAD P   E+  GF +L  ++P      ++S   V G ++R+FL+D +S P+ L   +DS   +  E  + +++V+    S YLPDVY+ L+ + +
Sbjct:   13 VSIAGGSLMAEKLPLSYCQSWPLWCTSAVGDGRLAMRRVNPSADGDDERGSWVDPLTFEDMWLPEDLPFPSFHLALTLVLKDGTPRYVAPGLDSTVASAGREWRNRGLCSVPMAKTWLPWRHTPIAQMRLSAYVQPPTPPDAPADGSDGARCQPLAVLVPVEKAFEMAAEVLADAPS--ELANGFSYLTVRLPLDDESLLASAALVPGARLRVFLSDAESFPTALGSSDDSWAWERGECDVRLMQVSPGGTSAYLPDVYRPLFENQK 277          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: A0A0M0JBK6_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBK6_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 7.460e-27
Identity = 75/230 (32.61%), Postives = 121/230 (52.61%), Query Frame = 2
Query:  326 NDQVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVSV-SKGGHS-WRNRGMNSFPVAHSWQHIGGTLGGQLTLSMYA--------SRNVKEG--------VGSSMWYAIEEKRGIADAITAIVGALADPPEGVEIGEGFHFLVAQVPGAVSSPTPV---NGQVRIFLTDFDSPSGL-LEVEDSDG-----AELSMSVVEVASAAESDYLPDVYKALY 934
            +++ GWV+PL+F +LW+P G   P+   +LG ++K+G PR+L P    +V S GG   W NRG+NS P+A +W   G      L LS Y         S+  + G        +  S+W  +     +ADA   I+  +A  P+   +GEGF +L+  +   ++ P        ++R+FL+D D+  G  L ++D +G     AE  +S+ E  S  ESD++P+VYK L+
Sbjct:    4 DEKGGWVNPLTFEQLWLPQGLAMPKSRAALGAVLKNGVPRFLFPTTATTVGSDGGRRLWYNRGVNSLPLAKTWLTFGDIPINDLRLSAYTQLLPKTFGSKEAEVGSDEAVDLAIRRSVWKPVLPLISVADAFNTILEVMASAPDA--LGEGFCYLIVPLSEEIALPEEAIQPGNRLRLFLSDVDATEGKPLNLDDREGWKWTHAECDLSMFETESGRESDFMPEVYKPLF 231          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: A0A7S0XQA7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQA7_HEMAN)

HSP 1 Score: 112 bits (280), Expect = 5.650e-25
Identity = 69/175 (39.43%), Postives = 93/175 (53.14%), Query Frame = 2
Query:  332 QVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSKGGHSWRNRGMNSFPVAHSWQHIGGTLGGQLTLSMYASRNVKEGVGSSMWYAIE------------EKRGIA---DAITAIVGALADPPEGVEIGEGFHFLVAQVPGAVSSPTPVNG-QVRIFLTD 808
            Q GWVDP+S+ ELW+P   P P M  ++  +++DG  RYLMP +DVS+  GG  W NRGM SFP+A  W  +G     +L L+ Y+    KE   S++    E            EK   A   DAIT++V  LAD   G EIG GFH +V    G      P  G ++++ LTD
Sbjct:    1 QGGWVDPISWGELWLPEDLPLPVMRPAVAAIVRDGVVRYLMPGLDVSIQAGGKLWWNRGMCSFPLASKWADVGACDLARLRLAAYSQSGYKEAEKSTITMKEEGEPEEEDEVTAWEKLWQAPASDAITSLVMLLADEG-GSEIGHGFHIVVVPAEGEQLRQAPDAGTRLKVLLTD 174          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: L1JUM1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JUM1_GUITC)

HSP 1 Score: 106 bits (265), Expect = 2.650e-22
Identity = 73/246 (29.67%), Postives = 118/246 (47.97%), Query Frame = 2
Query:  254 QRFPMWIVGETEKGQKTLTGVPQSNDQVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSKGGHSWRNRGMNSFPVAHSWQHIGGTLGGQLTLSMY-------ASRNVKE----------GVGSSMWYAIEEKRGIADAITAIVGALADPPEGVEIGEGFHFLVAQVPGAVSSPTPVNG-QVRIFLTDFDSPSGLLEVEDSDGAELSMSVVEVASAAESDYLPDVYKALYH 937
            + F  WI+ E E   +          + GWVDP SF+E W+P+  P P M  ++G L KDG  +YLMPA+D+ V  GG  W NRG+NS P+A  W  +      ++++  +       A R VKE          G    +W A   K      I  +V  L+D  +G  + +G+H +V  +P       P  G ++R+ L+   +   L +  ++  +EL++         ES+++P VYK L++
Sbjct:    3 ESFQKWILSEDEL--RPFFNSASYGKESGWVDPFSFDEAWLPTDLPLPLMRPAIGALTKDGQVKYLMPALDMCVQAGGKLWWNRGINSVPLAKRWLDVNCADLSRMSIQAFCQGGYEDAKRAVKELGDDHPDNELGPWKKLWEAPAAK-----GIVELVETLSDD-KGACVEKGYHIIVIPLPEEPLREAPDAGNRLRLCLSAAGAIDPLQDGIETTYSELNVLFRATMPGNESEHMPQVYKELFN 240          
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Match: A0A7S0ERZ3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ERZ3_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 2.360e-21
Identity = 86/296 (29.05%), Postives = 138/296 (46.62%), Query Frame = 2
Query:  209 SLQGSRSEMLPIASVQRFPMWIVGETEKGQKTLTGVPQSNDQVGWVDPLSFNELWIPSGSPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSK----GGHSWRNRGMNSFPVAHSWQHIGGTLGGQLTLSMY-----------------------ASRNVKEGVGSSMWYAIEEK------------------RGIADAITAIVGALADPPEGV-EIGEGFHFLVAQVPG-AVSSPTPVNGQ-VRIFL-TDFDSPSGLLEVEDSDGAELSMS-----VVEVASAAESDYLPDVYKALY 934
            S++G  S  LP+A   R+P+WI       +  L+G     ++ GWVDP+SF +LW+P   P P   L++ ++IKDG PRYL+P ++ S++      G  W NRG+NS P+   W        G+  L  Y                       A    +EG       A EE                   + + +A+ +I+  LA+    + E+GEG+HF+ A+V G A+ + T   G+ +R+ L T  D P+     E+ +G  LS +     V  + +  ES+++P+ YK LY
Sbjct:   27 SIKGG-SGQLPLAMC-RWPLWIASADHVTK--LSGAGGDEEEAGWVDPISFEQLWLPEDLPLPSSHLAVSLVIKDGVPRYLLPCIETSITTVSGVSGTVWHNRGLNSVPLGAQWM-----AWGEAPLKAYRLFSFGSDFKPPAPPPARRHPRGARAAAEEGAAEEADTAEEELPPAWEPLQVMADRPGGGGQPVEEALGSIMRVLAEAGAEIKEMGEGYHFITARVDGGALPADTVRPGRKLRLILATALDDPNP--NDEEWEGEMLSFARCDTTVYSIPAGGESEFMPECYKPLY 311          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7248.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LL92_ECTSI9.700e-6546.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1VC31_HETAK4.730e-4739.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CL77_9STRA1.510e-4436.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1NKJ8_9STRA1.100e-3933.73Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2MPJ3_9STRA6.500e-3234.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J5XAL8_DIALT3.470e-2830.71Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A0M0JBK6_9EUKA7.460e-2732.61Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S0XQA7_HEMAN5.650e-2539.43Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1JUM1_GUITC2.650e-2229.67Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S0ERZ3_9EUKA2.360e-2129.05Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7248contigC-tenellus_contig7248:1302..4317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LL92
Model size1852
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.18e-70
EggNOG OGs2EA9U@1|root,2SGID@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001760.1
Cds size717
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7248.1.2prot_C-tenellus_contig7248.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7248 2205..4085 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790022.3524003-UTR-C-tenellus_contig7248:1301..22041680790022.3524003-UTR-C-tenellus_contig7248:1301..2204Choristocarpus tenellus KU2346UTRC-tenellus_contig7248 1302..2204 -
1680790022.474538-UTR-C-tenellus_contig7248:4085..43171680790022.474538-UTR-C-tenellus_contig7248:4085..4317Choristocarpus tenellus KU2346UTRC-tenellus_contig7248 4086..4317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790022.380812-CDS-C-tenellus_contig7248:2204..24081680790022.380812-CDS-C-tenellus_contig7248:2204..2408Choristocarpus tenellus KU2346CDSC-tenellus_contig7248 2205..2408 -
1680790022.3907013-CDS-C-tenellus_contig7248:2771..28451680790022.3907013-CDS-C-tenellus_contig7248:2771..2845Choristocarpus tenellus KU2346CDSC-tenellus_contig7248 2772..2845 -
1680790022.4355643-CDS-C-tenellus_contig7248:3109..33361680790022.4355643-CDS-C-tenellus_contig7248:3109..3336Choristocarpus tenellus KU2346CDSC-tenellus_contig7248 3110..3336 -
1680790022.448327-CDS-C-tenellus_contig7248:3717..38041680790022.448327-CDS-C-tenellus_contig7248:3717..3804Choristocarpus tenellus KU2346CDSC-tenellus_contig7248 3718..3804 -
1680790022.4613998-CDS-C-tenellus_contig7248:3960..40851680790022.4613998-CDS-C-tenellus_contig7248:3960..4085Choristocarpus tenellus KU2346CDSC-tenellus_contig7248 3961..4085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7248.1.2

>prot_C-tenellus_contig7248.1.2 ID=prot_C-tenellus_contig7248.1.2|Name=mRNA_C-tenellus_contig7248.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=239bp
MLPIASVQRFPMWIVGETEKGQKTLTGVPQSNDQVGWVDPLSFNELWIPS
GSPTPQMTLSLGMLIKDGNPRYLMPAMDVSVSKGGHSWRNRGMNSFPVAH
SWQHIGGTLGGQLTLSMYASRNVKEGVGSSMWYAIEEKRGIADAITAIVG
ALADPPEGVEIGEGFHFLVAQVPGAVSSPTPVNGQVRIFLTDFDSPSGLL
EVEDSDGAELSMSVVEVASAAESDYLPDVYKALYHDDQ*
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mRNA from alignment at C-tenellus_contig7248:1302..4317-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7248.1.2 ID=mRNA_C-tenellus_contig7248.1.2|Name=mRNA_C-tenellus_contig7248.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3016bp|location=Sequence derived from alignment at C-tenellus_contig7248:1302..4317- (Choristocarpus tenellus KU2346)
GTTCTAGCCCGTTTGCGCAGCCATTGAAAGGTCTCACCCAGCAGGATAAT GCTAGCGACCGCAAGTTTGTTAGTATCGCAGGGGTGAGTTGGGTAACTGT GGCCCATTGATCCTCCGCAACATGAACGCACGGTAAATTGCTCCGTACGT TCACCCTCAATAGATCTGGTCGTACGTATACCCTCGTCCTAACGTTCGTG TTCCTGTCTCCCTGCAGGGTTCACGCTCAGAGATGCTTCCCATAGCCTCA GTCCAGCGATTTCCGATGTGGATTGTGGGGGAAACGGAAAAGGGTCAGAA AACACTAACAGGCGTTCCTCAAAGTAACGACCAAGTCGGTTGGGTAGATC CACTCAGGTGCCCCTTCAGCCATACGTGTTCTTGTGGTACTGGGAATTAC CCTACAATGACCTTATTCAATGTTTACATTTGAATTGTTGATCGCAGGGA AAAGTCCGATGCCCCCGCAAATGCCATCGCCCTCTCATTTTTCCCGATTC GCCTCATTCACAGCTTCAACGAACTGTGGATTCCCTCTGGTAGTCCAACG CCACAAATGACGCTCAGCCTCGGCATGCTCATCAAAGATGGGAACCCCAG GTATGCATATTTTTACTATTGGTGACAGATGGCAACACGTCACAATTGTT TGCCGATCTTCCCCACCCTGAAGCCCAGTTTCTCGATATTCTCGCACACC ATCTGCACCATAAGGTACATTAAAACCAAAAATATCACCACCTCCTTTGA TGCAGGAAAACTGCCTTTGGCTTGCATCTAACCATCACGCTTAACAACCC TCTAAACCTCTGGCTCCCTAAGTCGCCCTTAGGAGACAGCCGTGATCCTG TTGTCTCATGCATCTTAGCTCAAGGAGAGAGCCGATCCAGCCATGAGATA TGCTACGGCAACTAGTATAGATCATTTTAATTGAAAAGATAACTTTAAGC AACCGAGGATGTGCCTCTCTTTTCACCTCAGGTACCTCATGCCTGCAATG GACGTTTCCGTGTCGAAAGGTGGGCATAGTTGGCGCAACAGGGGTATGAA TAGCTTTCCGGTGGCCCACAGCTGGCAGCATATTGGGGGCACTTTGGGGG GACAATTGACCCTCTCGATGTACGCAAGTCGTAATGTGAAGGAAGGTGTG GGAAGCAGCATGTGGTACGCCATAGAAGAGAAGCGAGGGATTGCGGATGC CATTACAGGTGGATGAGTGCATATAATATCACCTTATTTGGGATCACATG CACCACTAAAGAGCGTTCACTTAAGCGTTATGCCCACTGCATTCAAGTAC CACTTCAAACTGTACAGTATTTTGCATAGTGGTTTGGACAGTCGTTGATA CCATGATTCTGTTGAGGAGCTACTCCTGCACACTTTCCAATGATTGTAAG GAGTTGGATCATATTTCCCAATATCCTTGCCATTCACACCATTGCTGTTT GACCTCCCACAATCTCGCACAGCCATTGTGGGTGCTCTGGCAGACCCACC CGAAGGAGTAGAGATTGGAGAGGGGTTCCATTTCCTTGTGGCTCAGGTAG GTGCTTAAAATCGCTAAGCTCAACTCACCACAGAAGACATTCTGCCATGT CTTGCTTCGTACTTCAAAAGATGTGCATGAGGTCGGTTTTTATTCAGCCA ACATGATTGCTGAATACCTCCATCCTTGCCATTCAGAAGGCAATTTTATT GCTTCCAAGTGTCTGCCCTTTCTTTCCTTGAAAACATGGATAGATGCATG AACACGGAAAGCAGAATAGAACCAGATAGGGATGTAATCTAGCTGAGCAT TGATAATGCACGGGCTGGCTCTGTCCAAGCCACAGGATGTTCCAAATCTA TTGTGGTAGGTAACATGGAGAAAAAGCTTGACTGACCTCCATTTCTGTTA TTCTTGCAGGTCCCTGGAGCTGTCTCGAGCCCGACTCCTGTCAATGGACA GGTGAGGATATTTCTCACTGACTTCGACAGCCCCTCCGGGCTGTTGGAAG TTGAGGACTCGGATGGGGCGGAACTTAGTATGTCTGTGGTCGAGGTGGCC AGCGCAGCAGAAAGTGACTACCTACCTGATGTCTACAAGGCGTTGTACCA TGACGACCAATAGCAACAGGATAGTTATTTTTTGTGCATCTTGCACCTTG ATTACAGTACCTTGTCTGTATGAATATATGCACTGAGAGGCGTGATGGCT AAAGGAAAGGTGCTATCTATGTGGCAGGCACCACAAGGTTGACTTGCTTG TGGCGATATCTTTGTTTCATCCTCAATGGGTTCAATTTGGAGGGAGATAT GGAAGCTGCCGATACTACTCAACCCCACCTCGCGCCTGCTCACACACAAA TGGGCTATCGAGAGTCAAGAGTCTGGGCCCCTCATATTTCTACATTCCAC TTTGTTTACCACAGTGAACGTGATTCCACCACCAACTAACCTCTTTCAGA TGCAATAGTGCCCTGGTGCTGTGGGGTGTTCATGAGTGGATGTCTTGGTC GTGTGCAGAAGAACTCAAGAAGTACCCGAGAAATTTTGTAGTTTCTGGAG ATGTGTGGCTATGACTTTTGTCTTTTGGAGATGCGCAAATAGAGGCAAAG GGTGAAGGTTCAAATGTTGCAGGAGACACAGAAGGTAGAGAGAGGAGAGG AACCTAGTTAGAAGTAAACTCTGGGTTCTGCGGTTAAAATGTTGCCAGGA TGGCGGAGATATCAAACCAGATTTCACATCTTCAATCAATGTATATGCCG AGTATAATCCCCCTGTACAGTGCAATGTTGTGTTATGGAAGTGTGCTATA ATGACAGGTCTGAATCCAGATGTACAGCAGACTAATCCGCATCCGTAGAT GTATTTGCTCTTGCATTTATGGTCTGTGCCAATCAAGATTTTCAGTGAGT GCCCTTGAGATCTCCAGCTAGGTACACCATTTACTATTTTTATTAATAGC AACCATATTGTATTGGCTAAACGCCATCCAACACTCCTCAAAAGTCGTGC TTAGTTTGAAGCGTCT
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Coding sequence (CDS) from alignment at C-tenellus_contig7248:1302..4317-

>mRNA_C-tenellus_contig7248.1.2 ID=mRNA_C-tenellus_contig7248.1.2|Name=mRNA_C-tenellus_contig7248.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=717bp|location=Sequence derived from alignment at C-tenellus_contig7248:1302..4317- (Choristocarpus tenellus KU2346)
ATGCTTCCCATAGCCTCAGTCCAGCGATTTCCGATGTGGATTGTGGGGGA
AACGGAAAAGGGTCAGAAAACACTAACAGGCGTTCCTCAAAGTAACGACC
AAGTCGGTTGGGTAGATCCACTCAGCTTCAACGAACTGTGGATTCCCTCT
GGTAGTCCAACGCCACAAATGACGCTCAGCCTCGGCATGCTCATCAAAGA
TGGGAACCCCAGGTACCTCATGCCTGCAATGGACGTTTCCGTGTCGAAAG
GTGGGCATAGTTGGCGCAACAGGGGTATGAATAGCTTTCCGGTGGCCCAC
AGCTGGCAGCATATTGGGGGCACTTTGGGGGGACAATTGACCCTCTCGAT
GTACGCAAGTCGTAATGTGAAGGAAGGTGTGGGAAGCAGCATGTGGTACG
CCATAGAAGAGAAGCGAGGGATTGCGGATGCCATTACAGCCATTGTGGGT
GCTCTGGCAGACCCACCCGAAGGAGTAGAGATTGGAGAGGGGTTCCATTT
CCTTGTGGCTCAGGTCCCTGGAGCTGTCTCGAGCCCGACTCCTGTCAATG
GACAGGTGAGGATATTTCTCACTGACTTCGACAGCCCCTCCGGGCTGTTG
GAAGTTGAGGACTCGGATGGGGCGGAACTTAGTATGTCTGTGGTCGAGGT
GGCCAGCGCAGCAGAAAGTGACTACCTACCTGATGTCTACAAGGCGTTGT
ACCATGACGACCAATAG
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