mRNA_C-tenellus_contig724.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig724.2.1
Unique NamemRNA_C-tenellus_contig724.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig724.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig724contigC-tenellus_contig724:16297..17111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size815
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790021.8109035-UTR-C-tenellus_contig724:16296..164251680790021.8109035-UTR-C-tenellus_contig724:16296..16425Choristocarpus tenellus KU2346UTRC-tenellus_contig724 16297..16425 -
1680790021.8429856-UTR-C-tenellus_contig724:16860..171111680790021.8429856-UTR-C-tenellus_contig724:16860..17111Choristocarpus tenellus KU2346UTRC-tenellus_contig724 16861..17111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790021.8250763-CDS-C-tenellus_contig724:16425..168601680790021.8250763-CDS-C-tenellus_contig724:16425..16860Choristocarpus tenellus KU2346CDSC-tenellus_contig724 16426..16860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig724.2.1prot_C-tenellus_contig724.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig724 16426..16860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig724.2.1

>prot_C-tenellus_contig724.2.1 ID=prot_C-tenellus_contig724.2.1|Name=mRNA_C-tenellus_contig724.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=145bp
MMTPDINPQGYHCGGGKNFFSSDHERRNDTWGLILVMKRLDFFFRVSKMV
LGLGLGETNGVRECRRKSNWGLGRGFLHKPMGTGLRHLHSRGVRGLGQEG
SHNPLNPGCCLSSGRIEWGHHNLHWHGREPLDEQPLWSDTRWRM*
back to top

mRNA from alignment at C-tenellus_contig724:16297..17111-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig724.2.1 ID=mRNA_C-tenellus_contig724.2.1|Name=mRNA_C-tenellus_contig724.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=815bp|location=Sequence derived from alignment at C-tenellus_contig724:16297..17111- (Choristocarpus tenellus KU2346)
GACTGGTGAGCCCCACCTAGTGAAGGTATCTCACTCTCTTCTTAACTGTG
GTACAAGTTAATAAACAATAATATAACTAGTTGTGTGGGACAACAGATCG
CCAAGGACAGCTTAACACACCAGTTAACCAATACCCTTCCCACACTTGCA
GGATTCATTGGTTAACTGAACCAATAACTGTCACCTACAGGACAACTCGT
GATGCGCAAGGGACATTAGTTGGGGAGAGTCCATGTGGGATAGTAACCTG
CATGATGACACCCGACATCAATCCTCAGGGTTACCACTGTGGAGGGGGGA
AGAATTTTTTTTCCAGTGATCACGAGCGGAGGAATGACACCTGGGGATTG
ATTCTAGTGATGAAGAGACTGGATTTTTTTTTTAGGGTATCGAAGATGGT
ATTAGGGTTAGGGTTAGGGGAAACGAATGGGGTCAGGGAATGCAGAAGAA
AAAGCAATTGGGGTCTGGGACGAGGATTTCTGCACAAGCCAATGGGGACG
GGGTTACGTCACCTCCACAGCAGGGGAGTGAGAGGCTTGGGTCAGGAGGG
CAGTCACAACCCTCTGAACCCAGGATGCTGTCTCAGCTCCGGGAGAATAG
AGTGGGGCCATCACAATCTCCACTGGCACGGAAGAGAACCACTAGACGAA
CAGCCTTTGTGGTCAGACACAAGGTGGAGGATGTGATTGGTGATAAATTG
GGACTGGGATGGCCAGGGGATACTCCAGCAAGTGAGTTGCCTCCAGTACC
TCTCTCTGTCAAGGAAGCGCTTGAGTCTTGAGAGTCCAAGGAGTGGATTG
AGGCTATCTATGCTG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig724:16297..17111-

>mRNA_C-tenellus_contig724.2.1 ID=mRNA_C-tenellus_contig724.2.1|Name=mRNA_C-tenellus_contig724.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=435bp|location=Sequence derived from alignment at C-tenellus_contig724:16297..17111- (Choristocarpus tenellus KU2346)
ATGATGACACCCGACATCAATCCTCAGGGTTACCACTGTGGAGGGGGGAA
GAATTTTTTTTCCAGTGATCACGAGCGGAGGAATGACACCTGGGGATTGA
TTCTAGTGATGAAGAGACTGGATTTTTTTTTTAGGGTATCGAAGATGGTA
TTAGGGTTAGGGTTAGGGGAAACGAATGGGGTCAGGGAATGCAGAAGAAA
AAGCAATTGGGGTCTGGGACGAGGATTTCTGCACAAGCCAATGGGGACGG
GGTTACGTCACCTCCACAGCAGGGGAGTGAGAGGCTTGGGTCAGGAGGGC
AGTCACAACCCTCTGAACCCAGGATGCTGTCTCAGCTCCGGGAGAATAGA
GTGGGGCCATCACAATCTCCACTGGCACGGAAGAGAACCACTAGACGAAC
AGCCTTTGTGGTCAGACACAAGGTGGAGGATGTGA
back to top