mRNA_C-tenellus_contig7230.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7230.3.1
Unique NamemRNA_C-tenellus_contig7230.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7230.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7230contigC-tenellus_contig7230:2336..3839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size908
Hectar predicted targeting categoryother localisation
Exons2
Cds size906
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790021.271742-CDS-C-tenellus_contig7230:2335..31331680790021.271742-CDS-C-tenellus_contig7230:2335..3133Choristocarpus tenellus KU2346CDSC-tenellus_contig7230 2336..3133 -
1680790021.283066-CDS-C-tenellus_contig7230:3731..38391680790021.283066-CDS-C-tenellus_contig7230:3731..3839Choristocarpus tenellus KU2346CDSC-tenellus_contig7230 3732..3839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7230.3.1prot_C-tenellus_contig7230.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7230 2336..3839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7230.3.1

>prot_C-tenellus_contig7230.3.1 ID=prot_C-tenellus_contig7230.3.1|Name=mRNA_C-tenellus_contig7230.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=302bp
WIPQDKRQGPWREETGCGQGEHSPEEESLKVIWGLQGRESENNSNGASNT
EGSIKFSSGESAGRVVLDTSLEVAAFLPAVATAAVLEATRVSALIYDTSN
READLGTNNLSGRGIHSPGMEVPESSGESEPSNRITSGTSSSHSLSEEIK
GEERGGGRNKVDWTLGISGRGRSHNSNSDSSSHNSSSGNNTSARSSLAAA
MKATLGTGSSSYMPFSRSKAFSDEPQTSVSEDRVSGSSTRWRNAVTCGTE
ENKSASSSQSSPSTMEFLPGRECTRRRGSGEDSPLGKGTDINGGSLPTSS
SE
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mRNA from alignment at C-tenellus_contig7230:2336..3839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7230.3.1 ID=mRNA_C-tenellus_contig7230.3.1|Name=mRNA_C-tenellus_contig7230.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1504bp|location=Sequence derived from alignment at C-tenellus_contig7230:2336..3839- (Choristocarpus tenellus KU2346)
TGGATTCCGCAGGACAAAAGGCAAGGGCCATGGAGAGAGGAAACAGGGTG
TGGGCAGGGGGAACACAGTCCTGAAGAGGAGAGCCTGAAAGTGATCTGGG
GCTTGCAGGTGATTCGCTTTGTGAGAGTTGTGGAATGAGGGAGTGGGGGG
CAATTTAAGAAAAACCAACCCTTGCTTTCACATTCCCCCTCTCATGCTGC
TGATCTTTCTGATGGAGCTTGTTGCATAATGCGCATGGAATCCCCAACGG
GTTGGCCACATGTGTCTGTGATATGTAATGTTTTCATTTCTCAAGAGTAG
CTTTGATGGACTGAAACTTGTTTCCTTCCATGGAGAGACTCTAGATGCCT
GTACCTGTCTGCAAGCCTGAGTGTAAGCTTCCCCCTTGACCCCTCACCCA
TTTAGATTTTCTGTGGTTATTGAGATGACATTGACAGTGCTACTGCTCTA
CCCCAACATCTAATTGTGCCTCTAAAACCTAATCTTGATGGTTGCTCCCT
CCCTCACCAAAATGAACTGGCCCTTGAGAAAAATATGATGCGTTGTTGCT
CTATCCTAGCAATTGGTGTGTGGTCAATAGTGATACTCATAGCACTCCCA
GGCATCACTTAAGCAGGCAATTCTGTCTCAACACAGACCCAATTCTCGCC
AACTTTGATGTATCATCCCCACAGCAATCCACAATTTTCGTATGGCATTC
CACCAGGGCAGAGAGAGTGAGAACAACAGCAACGGTGCCAGTAATACCGA
AGGCTCTATCAAATTTTCTTCAGGGGAATCAGCTGGGAGAGTCGTGTTAG
ATACATCATTGGAAGTAGCCGCATTTTTACCAGCAGTTGCAACAGCAGCA
GTGCTAGAAGCAACTAGGGTATCAGCCCTCATCTATGATACCAGCAATAG
AGAGGCAGATTTAGGCACCAATAACTTGTCAGGCAGGGGCATACACTCAC
CAGGAATGGAAGTCCCAGAGAGTAGTGGTGAGAGCGAACCCAGCAACAGA
ATCACAAGTGGTACTAGCAGCAGCCACAGTCTAAGCGAAGAAATCAAAGG
GGAGGAGAGAGGTGGAGGTCGCAACAAAGTTGACTGGACATTAGGTATTT
CAGGGAGAGGACGTAGTCACAACAGCAATAGTGACAGCAGCAGCCACAAC
AGCAGTAGTGGCAATAACACCAGCGCCAGGTCATCTCTGGCGGCAGCTAT
GAAAGCAACATTGGGTACTGGATCCTCCAGTTATATGCCATTTTCAAGAA
GTAAGGCTTTCAGCGATGAACCTCAGACAAGTGTGAGTGAGGACAGGGTA
AGTGGCAGTAGTACGAGGTGGAGGAATGCTGTCACTTGTGGAACAGAGGA
AAATAAAAGTGCCAGCTCATCACAGTCATCCCCATCCACCATGGAGTTTC
TCCCAGGAAGAGAGTGCACCCGAAGAAGGGGGAGTGGCGAGGACAGCCCA
TTGGGAAAGGGAACTGATATAAATGGTGGAAGCTTGCCAACATCTTCATC
TGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7230:2336..3839-

>mRNA_C-tenellus_contig7230.3.1 ID=mRNA_C-tenellus_contig7230.3.1|Name=mRNA_C-tenellus_contig7230.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=906bp|location=Sequence derived from alignment at C-tenellus_contig7230:2336..3839- (Choristocarpus tenellus KU2346)
TGGATTCCGCAGGACAAAAGGCAAGGGCCATGGAGAGAGGAAACAGGGTG
TGGGCAGGGGGAACACAGTCCTGAAGAGGAGAGCCTGAAAGTGATCTGGG
GCTTGCAGGGCAGAGAGAGTGAGAACAACAGCAACGGTGCCAGTAATACC
GAAGGCTCTATCAAATTTTCTTCAGGGGAATCAGCTGGGAGAGTCGTGTT
AGATACATCATTGGAAGTAGCCGCATTTTTACCAGCAGTTGCAACAGCAG
CAGTGCTAGAAGCAACTAGGGTATCAGCCCTCATCTATGATACCAGCAAT
AGAGAGGCAGATTTAGGCACCAATAACTTGTCAGGCAGGGGCATACACTC
ACCAGGAATGGAAGTCCCAGAGAGTAGTGGTGAGAGCGAACCCAGCAACA
GAATCACAAGTGGTACTAGCAGCAGCCACAGTCTAAGCGAAGAAATCAAA
GGGGAGGAGAGAGGTGGAGGTCGCAACAAAGTTGACTGGACATTAGGTAT
TTCAGGGAGAGGACGTAGTCACAACAGCAATAGTGACAGCAGCAGCCACA
ACAGCAGTAGTGGCAATAACACCAGCGCCAGGTCATCTCTGGCGGCAGCT
ATGAAAGCAACATTGGGTACTGGATCCTCCAGTTATATGCCATTTTCAAG
AAGTAAGGCTTTCAGCGATGAACCTCAGACAAGTGTGAGTGAGGACAGGG
TAAGTGGCAGTAGTACGAGGTGGAGGAATGCTGTCACTTGTGGAACAGAG
GAAAATAAAAGTGCCAGCTCATCACAGTCATCCCCATCCACCATGGAGTT
TCTCCCAGGAAGAGAGTGCACCCGAAGAAGGGGGAGTGGCGAGGACAGCC
CATTGGGAAAGGGAACTGATATAAATGGTGGAAGCTTGCCAACATCTTCA
TCTGAA
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