mRNA_C-tenellus_contig7227.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7227.2.1
Unique NamemRNA_C-tenellus_contig7227.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7227.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7227contigC-tenellus_contig7227:2823..5586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2764
Hectar predicted targeting categoryother localisation
Exons1
Cds size1641
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790020.821947-UTR-C-tenellus_contig7227:2822..38721680790020.821947-UTR-C-tenellus_contig7227:2822..3872Choristocarpus tenellus KU2346UTRC-tenellus_contig7227 2823..3872 -
1680790020.8464727-UTR-C-tenellus_contig7227:5513..55861680790020.8464727-UTR-C-tenellus_contig7227:5513..5586Choristocarpus tenellus KU2346UTRC-tenellus_contig7227 5514..5586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790020.835485-CDS-C-tenellus_contig7227:3872..55131680790020.835485-CDS-C-tenellus_contig7227:3872..5513Choristocarpus tenellus KU2346CDSC-tenellus_contig7227 3873..5513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7227.2.1prot_C-tenellus_contig7227.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7227 3873..5513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7227.2.1

>prot_C-tenellus_contig7227.2.1 ID=prot_C-tenellus_contig7227.2.1|Name=mRNA_C-tenellus_contig7227.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=547bp
MTQIASIGAGATGLEALGTGERPAIKGSTGGVITLGKEGVSPWPVSAPSY
GPTTVPSRTEVGANGTAQTLGKRWYHRGGNGAGQVSGEESVRLFLLRGGS
FPPGELTFAALNEILRAQVEVTPTVAKQLAKMGEFTVGEYYPPQMGGGKV
IPPVHVHFRTWTLAIQMVLRHGMSLPLDLCARRVDLFTASLKSMADMLER
YLMTHQGVLSSSTDAVRRAVLEAVDLDLGEFSLDLGNVASQVLARHPYNP
PQLDEVPIVPPPKFKRTRALVAEDGRNLVRIMNISTLPTDSHGVGSKRRA
DAAELNDGLEVRISPAREPPAKTVGMQETSGAPPGACIEYWMGGNCSTLA
NGQACMFRHDTTRRQVMGPGRDARPTNNVPQPVGGVRFESEGMGRTGAPA
SWESGTRGGEVNSGQTFQGGVEGGAVTSFNRGGNFDNRDEGFNRDGRFTP
SQQGAGAGGNVQGGGVYVGGRGSNRGENFQGGGYRGEGTYEGTEGYSGGY
SAPPGNTTRGQDFSRPPTGGGGRRGPGSSGSQSNNMMSGRGGRVRR*
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mRNA from alignment at C-tenellus_contig7227:2823..5586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7227.2.1 ID=mRNA_C-tenellus_contig7227.2.1|Name=mRNA_C-tenellus_contig7227.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2764bp|location=Sequence derived from alignment at C-tenellus_contig7227:2823..5586- (Choristocarpus tenellus KU2346)
TGAGAACGAGAAGAAGCAGCTCCGACAGAAGGAGGATAGATTGAACGAAA
GGCTCAATCTTCGACTTTCTATAATGACACAGATAGCATCCATAGGGGCT
GGGGCAACTGGACTCGAGGCCTTGGGAACAGGGGAGAGACCAGCCATAAA
AGGAAGCACAGGTGGGGTGATAACCTTGGGGAAGGAGGGTGTTTCGCCCT
GGCCAGTGAGTGCCCCGTCCTATGGCCCCACGACTGTGCCCAGTAGGACG
GAGGTCGGCGCCAACGGAACCGCCCAGACGCTGGGTAAGAGGTGGTATCA
TCGTGGGGGGAATGGAGCTGGGCAAGTGTCGGGCGAAGAATCGGTCAGGT
TGTTTCTCCTCCGCGGGGGTTCCTTTCCACCTGGAGAATTAACCTTCGCA
GCTCTTAATGAAATTCTGAGGGCCCAGGTCGAGGTTACGCCTACAGTAGC
GAAACAGCTTGCCAAGATGGGCGAGTTCACTGTAGGAGAATACTACCCCC
CACAAATGGGGGGGGGAAAGGTCATTCCCCCGGTGCATGTCCATTTCCGA
ACATGGACTCTCGCAATCCAAATGGTCCTACGCCATGGTATGTCGTTGCC
TTTGGATCTATGTGCACGGAGAGTAGATCTATTCACCGCGTCTCTTAAGT
CCATGGCAGATATGTTGGAGCGGTACCTCATGACGCATCAAGGTGTGCTT
AGCTCCTCTACTGATGCCGTTCGCCGAGCGGTTCTGGAGGCCGTTGATCT
CGATCTGGGAGAGTTCTCTTTAGACCTCGGAAATGTGGCTTCCCAGGTCC
TCGCAAGGCACCCGTACAACCCACCGCAGTTGGACGAGGTCCCCATTGTC
CCTCCTCCCAAGTTCAAAAGAACACGAGCTCTGGTGGCTGAGGATGGACG
CAACTTGGTCCGTATCATGAATATTAGTACCTTGCCAACAGACTCACATG
GTGTTGGTAGCAAGCGACGAGCAGATGCTGCTGAGCTTAATGACGGACTA
GAGGTGAGGATCAGCCCTGCACGTGAACCACCTGCCAAGACAGTGGGCAT
GCAGGAGACATCGGGTGCACCCCCAGGGGCATGCATAGAATACTGGATGG
GTGGTAATTGCAGCACTCTTGCTAATGGGCAAGCCTGCATGTTCCGACAT
GATACTACTCGCAGACAGGTGATGGGACCAGGGAGGGATGCCAGGCCAAC
TAACAATGTCCCCCAGCCTGTCGGGGGGGTGAGGTTTGAGTCAGAGGGGA
TGGGGAGAACTGGTGCACCTGCAAGTTGGGAATCTGGGACTAGAGGAGGG
GAAGTCAACAGTGGGCAGACATTCCAAGGAGGTGTTGAAGGTGGGGCTGT
CACAAGCTTTAACAGGGGTGGAAACTTTGACAACAGGGATGAGGGCTTCA
ATAGGGATGGTAGATTCACACCGAGTCAGCAGGGTGCTGGGGCTGGAGGT
AATGTGCAGGGGGGTGGAGTGTACGTGGGAGGACGGGGCTCCAACAGGGG
TGAAAATTTCCAGGGGGGGGGCTACCGAGGGGAGGGAACGTATGAGGGAA
CTGAGGGCTATAGCGGAGGATATTCAGCTCCTCCTGGAAACACAACCAGA
GGACAGGACTTCAGCAGACCACCCACAGGGGGTGGTGGGAGAAGGGGTCC
TGGTTCGTCTGGCAGCCAAAGCAACAATATGATGAGTGGTCGGGGGGGAA
GGGTGAGGCGCTGATATGCGTTTTGTGAGGGAGCTGGGGTGGGTAGTGTT
ATGCTTTGGCTGGTATGCTGGTATGTGCTGAGTAAATCTTTCATGTACAC
AAGTCAATGACTTGCTGGGGATTTGGTGCTACGTTTGCGTAGTGAAAGTT
TGTTTCATTGGGTCTCGAGTTGGATGCCTGGTAAAAACTGGTACCAGGTT
TCTGTTTGAAACATAGTATTGCTTTCGCTCGGTAGAGAAGTGTTGCGTCT
CATCGGAGTGATTTCGAGGCAAGAGAGGTGTGTATGGAAGCCAAAGATAC
CCCTAAGCATCGGCACTCAACAGTAGGATATAGTAGAGCTCAGAAGGATC
TCATCTATTGGGTAGCAAGAGGCCCCTTGATGTGCTGGTTTGGGCTTGGT
CATTTGCTCAACATGGCACTTGGTGGAGTCCAAGGTTTTCTTTCAACGGA
ATGTATTCACTTTACCACATTGAGGTTGAGAAACAGGGCTAAGTTATCTA
GGATGCTTCCTATTCGTGTACTTGGGTTCCAAGCTGAGCGACATTCGTTC
ATGTTTAAACACACAATTATAATGAGCTAGTCATACATGCAAGTCTCTGT
GTGGTAGTTGAATGACAACTTTCTTAGCCCACAGTCTTTGTCATTGCTTT
CCTTGGTTTGGACCTGGGATTCTTTGCTGATCCTAAAAAACAGTATCATT
TCAAAGGTGTTCAGTGTTTCATCATCACCAGCAAAAAGCCACACCATACC
TCCCTGCCAGCACACAATCCTTTTTTACTTGAGTATTGTGAAGCCCCAGC
AGGTGATGTGGAGTTAGAGGGATCTGTAAGTATTCTTAATTGTTTGTAGT
AGTATTGCCCCATGCTCTGCTGCAATTTGTGGATCATCCACTTGTCACAA
CAGCAATTAGAGAACAACTGCTGATAGTAATGATATATTGTGTTTTGTCA
TGCGTTGAATTATTGCTCTTGTTTGTTATGACAGAGGATTTGACATTGTA
AGCACATCCCTGTCTACATTTCAGCAGTCTGCAGGATCTAGTGTTGAGGC
CTACTTGACAGTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7227:2823..5586-

>mRNA_C-tenellus_contig7227.2.1 ID=mRNA_C-tenellus_contig7227.2.1|Name=mRNA_C-tenellus_contig7227.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1641bp|location=Sequence derived from alignment at C-tenellus_contig7227:2823..5586- (Choristocarpus tenellus KU2346)
ATGACACAGATAGCATCCATAGGGGCTGGGGCAACTGGACTCGAGGCCTT
GGGAACAGGGGAGAGACCAGCCATAAAAGGAAGCACAGGTGGGGTGATAA
CCTTGGGGAAGGAGGGTGTTTCGCCCTGGCCAGTGAGTGCCCCGTCCTAT
GGCCCCACGACTGTGCCCAGTAGGACGGAGGTCGGCGCCAACGGAACCGC
CCAGACGCTGGGTAAGAGGTGGTATCATCGTGGGGGGAATGGAGCTGGGC
AAGTGTCGGGCGAAGAATCGGTCAGGTTGTTTCTCCTCCGCGGGGGTTCC
TTTCCACCTGGAGAATTAACCTTCGCAGCTCTTAATGAAATTCTGAGGGC
CCAGGTCGAGGTTACGCCTACAGTAGCGAAACAGCTTGCCAAGATGGGCG
AGTTCACTGTAGGAGAATACTACCCCCCACAAATGGGGGGGGGAAAGGTC
ATTCCCCCGGTGCATGTCCATTTCCGAACATGGACTCTCGCAATCCAAAT
GGTCCTACGCCATGGTATGTCGTTGCCTTTGGATCTATGTGCACGGAGAG
TAGATCTATTCACCGCGTCTCTTAAGTCCATGGCAGATATGTTGGAGCGG
TACCTCATGACGCATCAAGGTGTGCTTAGCTCCTCTACTGATGCCGTTCG
CCGAGCGGTTCTGGAGGCCGTTGATCTCGATCTGGGAGAGTTCTCTTTAG
ACCTCGGAAATGTGGCTTCCCAGGTCCTCGCAAGGCACCCGTACAACCCA
CCGCAGTTGGACGAGGTCCCCATTGTCCCTCCTCCCAAGTTCAAAAGAAC
ACGAGCTCTGGTGGCTGAGGATGGACGCAACTTGGTCCGTATCATGAATA
TTAGTACCTTGCCAACAGACTCACATGGTGTTGGTAGCAAGCGACGAGCA
GATGCTGCTGAGCTTAATGACGGACTAGAGGTGAGGATCAGCCCTGCACG
TGAACCACCTGCCAAGACAGTGGGCATGCAGGAGACATCGGGTGCACCCC
CAGGGGCATGCATAGAATACTGGATGGGTGGTAATTGCAGCACTCTTGCT
AATGGGCAAGCCTGCATGTTCCGACATGATACTACTCGCAGACAGGTGAT
GGGACCAGGGAGGGATGCCAGGCCAACTAACAATGTCCCCCAGCCTGTCG
GGGGGGTGAGGTTTGAGTCAGAGGGGATGGGGAGAACTGGTGCACCTGCA
AGTTGGGAATCTGGGACTAGAGGAGGGGAAGTCAACAGTGGGCAGACATT
CCAAGGAGGTGTTGAAGGTGGGGCTGTCACAAGCTTTAACAGGGGTGGAA
ACTTTGACAACAGGGATGAGGGCTTCAATAGGGATGGTAGATTCACACCG
AGTCAGCAGGGTGCTGGGGCTGGAGGTAATGTGCAGGGGGGTGGAGTGTA
CGTGGGAGGACGGGGCTCCAACAGGGGTGAAAATTTCCAGGGGGGGGGCT
ACCGAGGGGAGGGAACGTATGAGGGAACTGAGGGCTATAGCGGAGGATAT
TCAGCTCCTCCTGGAAACACAACCAGAGGACAGGACTTCAGCAGACCACC
CACAGGGGGTGGTGGGAGAAGGGGTCCTGGTTCGTCTGGCAGCCAAAGCA
ACAATATGATGAGTGGTCGGGGGGGAAGGGTGAGGCGCTGA
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