mRNA_C-tenellus_contig7201.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7201.1.1
Unique NamemRNA_C-tenellus_contig7201.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7201.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7201contigC-tenellus_contig7201:1785..3134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size642
Hectar predicted targeting categoryother localisation
Exons3
Cds size639
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790020.1694336-CDS-C-tenellus_contig7201:1784..19031680790020.1694336-CDS-C-tenellus_contig7201:1784..1903Choristocarpus tenellus KU2346CDSC-tenellus_contig7201 1785..1903 +
1680790020.1828718-CDS-C-tenellus_contig7201:2232..24631680790020.1828718-CDS-C-tenellus_contig7201:2232..2463Choristocarpus tenellus KU2346CDSC-tenellus_contig7201 2233..2463 +
1680790020.1943476-CDS-C-tenellus_contig7201:2843..31321680790020.1943476-CDS-C-tenellus_contig7201:2843..3132Choristocarpus tenellus KU2346CDSC-tenellus_contig7201 2844..3132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7201.1.1prot_C-tenellus_contig7201.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7201 1785..3132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7201.1.1

>prot_C-tenellus_contig7201.1.1 ID=prot_C-tenellus_contig7201.1.1|Name=mRNA_C-tenellus_contig7201.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=213bp
PNKVDQRSVHGGDTAGVVGGPQQLPIDPSGNEDEGEVAMREWRASGLSKL
CGDELWLSGRFNNILIRAPGTVKRSSDNVFFFVERNSASSALIVEEPPST
IEDGEKCQATVLRFRTRIPGLQAVAIRVKSIVRKKVPEPVSTIGMMGGGE
GGGKEKNTIGKDSNGGEEHGTSGEDNNAIPSTIPPLVVGSRTDSIPVLSS
PPTPDIGHDTTDN
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mRNA from alignment at C-tenellus_contig7201:1785..3134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7201.1.1 ID=mRNA_C-tenellus_contig7201.1.1|Name=mRNA_C-tenellus_contig7201.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1350bp|location=Sequence derived from alignment at C-tenellus_contig7201:1785..3134+ (Choristocarpus tenellus KU2346)
CCCAACAAAGTCGACCAAAGGAGTGTCCACGGTGGAGATACGGCCGGGGT
CGTTGGGGGACCTCAACAGCTGCCCATCGACCCCTCTGGGAATGAGGACG
AGGGTGAAGTCGCCATGAGGTGGGATCTTTCCAGGGGTATAGTGCTTCGC
GCGAGCATTCGTGCCTACATCTTCTCAGTCAATCGATCTCCGTGAGATTC
CAGTCCAGCTTCCAGCACATCTCGTACCCGTATTTCAATCTGCACCAATC
GAGAATCCCTTGTTAAATTATCATTTCATTCCTTTCGCATCGGGGGTACT
TGATGACACCTCTACCCTAACCCCAAGCGTGCACGTAATATACTGCTGTT
CGTGTGGAATTCATCTCTCCTTCTCAAGAATGGGAAGATCCCAAGCTCTC
TGTTTTTGTGCTGCTGAAATTTAAAAATATTTTCCTCTCGAAAACAAGGG
AATGGAGAGCTTCCGGCCTGTCCAAATTGTGCGGTGATGAGCTGTGGCTA
AGTGGGCGCTTCAACAACATTTTGATTCGTGCGCCAGGAACGGTCAAGAG
GTCATCGGACAATGTCTTCTTCTTCGTGGAGAGGAATAGTGCCTCCAGTG
CCCTCATTGTTGAGGAGCCACCATCGACCATTGAGGACGGGGAAAAATGT
CAGGCCACCGTCCTCCGCTTCAGGACAAGGTGAGAGTCCTTAGTCGACAC
CCTCCTTGTGCACACCAATGCTCTTCACCAGAATGGGATGAGATAGTTCC
TTCTCCTCCAATATGGATTGTCGTCTGAGAAGGGTTGCCATGCTAGTATC
ACTTGCCAGTCTTGGTGATGTTTTGAACAAGGGAACGGGCATGGGACCTC
TTAGATGTCAGGTTGCATGTCCAAGACTGGAACTTACTTACATTGCCGTG
GGCGTTTCAACAAGAAGCTATAATCAAGTTCCTCAGACTTCTACAACAGT
CTGTAATAGCATGCTTCCATGAAAAGGGCGTGTTTGTGTTTGTTTGAGTA
CATCCCCCACTAGTCAACAACAAACGTCCGTGCGGCCCCCTCCCGAATCC
CCTGATCAGAATTCCTGGTCTCCAGGCTGTAGCAATAAGAGTAAAGAGCA
TAGTTCGGAAGAAGGTGCCTGAACCTGTCTCAACGATAGGGATGATGGGA
GGAGGTGAAGGGGGTGGCAAAGAAAAAAACACCATCGGAAAGGACAGCAA
CGGCGGCGAGGAACACGGCACCAGTGGGGAAGACAACAACGCAATCCCCT
CCACTATCCCGCCCCTCGTTGTTGGCTCACGCACCGACAGCATTCCTGTG
CTCTCCTCTCCACCCACACCTGACATTGGACATGACACGACCGACAATAT
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Coding sequence (CDS) from alignment at C-tenellus_contig7201:1785..3134+

>mRNA_C-tenellus_contig7201.1.1 ID=mRNA_C-tenellus_contig7201.1.1|Name=mRNA_C-tenellus_contig7201.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=639bp|location=Sequence derived from alignment at C-tenellus_contig7201:1785..3134+ (Choristocarpus tenellus KU2346)
CCCAACAAAGTCGACCAAAGGAGTGTCCACGGTGGAGATACGGCCGGGGT
CGTTGGGGGACCTCAACAGCTGCCCATCGACCCCTCTGGGAATGAGGACG
AGGGTGAAGTCGCCATGAGGGAATGGAGAGCTTCCGGCCTGTCCAAATTG
TGCGGTGATGAGCTGTGGCTAAGTGGGCGCTTCAACAACATTTTGATTCG
TGCGCCAGGAACGGTCAAGAGGTCATCGGACAATGTCTTCTTCTTCGTGG
AGAGGAATAGTGCCTCCAGTGCCCTCATTGTTGAGGAGCCACCATCGACC
ATTGAGGACGGGGAAAAATGTCAGGCCACCGTCCTCCGCTTCAGGACAAG
AATTCCTGGTCTCCAGGCTGTAGCAATAAGAGTAAAGAGCATAGTTCGGA
AGAAGGTGCCTGAACCTGTCTCAACGATAGGGATGATGGGAGGAGGTGAA
GGGGGTGGCAAAGAAAAAAACACCATCGGAAAGGACAGCAACGGCGGCGA
GGAACACGGCACCAGTGGGGAAGACAACAACGCAATCCCCTCCACTATCC
CGCCCCTCGTTGTTGGCTCACGCACCGACAGCATTCCTGTGCTCTCCTCT
CCACCCACACCTGACATTGGACATGACACGACCGACAAT
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