mRNA_C-tenellus_contig7192.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7192.4.1
Unique NamemRNA_C-tenellus_contig7192.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A6H5JJ47_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ47_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.550e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   70 EIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDEVSDS 192
            E+DPL+EDISQEDAWVVIS+YFSEKGLVRQQLDSFDE   S
Sbjct:   96 ELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQS 136
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 7.730e-13
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   70 EIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDEVSDS 192
            E+DPL+EDISQEDAWVVIS+YFSEKGLVRQQLDSFDE   S
Sbjct:   95 ELDPLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQS 135
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A2U1KVS3_ARTAN (DNA-directed RNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KVS3_ARTAN)

HSP 1 Score: 60.8 bits (146), Expect = 2.900e-10
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    7 NGHDNVIDLDGMGENYDEYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 180
            N  DN +D +      DE +   +  +EDI+QEDAW VISSYF EKGLVRQQLDSFDE
Sbjct:    9 NNDDNEVDYNNNTMGGDEGEEYGEDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDE 66
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A251V1W7_HELAN (DNA-directed RNA polymerase subunit beta n=7 Tax=Mesangiospermae TaxID=1437183 RepID=A0A251V1W7_HELAN)

HSP 1 Score: 63.9 bits (154), Expect = 3.980e-10
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   58 EYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 180
            EYD   D  +EDI+QEDAW VISSYF EKGLVRQQLDSFDE
Sbjct:    6 EYDQGYDDEEEDITQEDAWAVISSYFEEKGLVRQQLDSFDE 46
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A7C8ZGU7_OPUST (DNA-directed RNA polymerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZGU7_OPUST)

HSP 1 Score: 60.5 bits (145), Expect = 4.200e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   64 DNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 180
            D E D  +EDI+QEDAW VIS+YF EKGLVRQQLDSFDE
Sbjct:   22 DGEEDDEEEDITQEDAWAVISAYFEEKGLVRQQLDSFDE 60
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.430e-10
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:   70 EIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 180
            E+DP +E+I+QEDAW VISSYF+EKGLVRQQLDSFDE
Sbjct:    8 ELDPHEEEITQEDAWQVISSYFAEKGLVRQQLDSFDE 44
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A1U7YXW1_NELNU (DNA-directed RNA polymerase subunit beta n=318 Tax=Magnoliopsida TaxID=3398 RepID=A0A1U7YXW1_NELNU)

HSP 1 Score: 63.2 bits (152), Expect = 7.420e-10
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   55 DEYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 180
            DEYD  ++  DE+I+QEDAW VIS+YF EKGLVRQQLDSFDE
Sbjct:    5 DEYDPSMNDEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDE 46
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: UPI001C689E82 (DNA-directed RNA polymerase II subunit RPB2-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI001C689E82)

HSP 1 Score: 59.7 bits (143), Expect = 9.010e-10
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   58 EYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 180
            E+D   +  +EDI+QEDAW VISSYF EKGLVRQQLDSFDE
Sbjct:    6 EHDQGYNDDEEDITQEDAWTVISSYFEEKGLVRQQLDSFDE 46
[Close]
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A426YEA4_ENSVE (DNA-directed RNA polymerase n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426YEA4_ENSVE)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-9
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   64 DNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE-VSDSKQGMM 207
            DN     DE+I+QEDAW VIS+YF EKGLVRQQLDSFDE +S + QG++
Sbjct:  107 DNHTTMEDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFISTTMQGIV 155
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BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Match: A0A7J7LRZ0_9MAGN (DNA-directed RNA polymerase subunit beta n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J7LRZ0_9MAGN)

HSP 1 Score: 61.6 bits (148), Expect = 2.590e-9
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   58 EYDNEIDPLDEDISQEDAWVVISSYFSEKGLVRQQLDSFDE 180
            EYD  +D  +E+I+QEDAW VISS+F EKGLVRQQLDSFDE
Sbjct:    6 EYDPMVDDEEEEITQEDAWAVISSFFEEKGLVRQQLDSFDE 46
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7192.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ47_9PHAE7.550e-1385.37DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FHZ3_ECTSI7.730e-1385.37DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A2U1KVS3_ARTAN2.900e-1058.62DNA-directed RNA polymerase n=1 Tax=Artemisia annu... [more]
A0A251V1W7_HELAN3.980e-1078.05DNA-directed RNA polymerase subunit beta n=7 Tax=M... [more]
A0A7C8ZGU7_OPUST4.200e-1076.92DNA-directed RNA polymerase n=1 Tax=Opuntia strept... [more]
A0A835YQ41_9STRA5.430e-1081.08DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A1U7YXW1_NELNU7.420e-1073.81DNA-directed RNA polymerase subunit beta n=318 Tax... [more]
UPI001C689E829.010e-1073.17DNA-directed RNA polymerase II subunit RPB2-like n... [more]
A0A426YEA4_ENSVE1.320e-965.31DNA-directed RNA polymerase n=1 Tax=Ensete ventric... [more]
A0A7J7LRZ0_9MAGN2.590e-973.17DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7192contigC-tenellus_contig7192:6534..6761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHZ3
Preferred nameRPB2
PFAMsRNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_4,RNA_pol_Rpb2_5,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Model size228
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
Exons1
Evalue1.27e-13
EggNOG OGsCOG0085@1|root,KOG0214@2759|Eukaryota
Ec32 ortholog descriptionRNA polymerase Rpb2, domain 5
Ec32 orthologEc-12_006450.1
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size228
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790019.5116472-CDS-C-tenellus_contig7192:6533..67611680790019.5116472-CDS-C-tenellus_contig7192:6533..6761Choristocarpus tenellus KU2346CDSC-tenellus_contig7192 6534..6761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7192.4.1prot_C-tenellus_contig7192.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7192 6534..6761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7192.4.1

>prot_C-tenellus_contig7192.4.1 ID=prot_C-tenellus_contig7192.4.1|Name=mRNA_C-tenellus_contig7192.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=76bp
MSNGHDNVIDLDGMGENYDEYDNEIDPLDEDISQEDAWVVISSYFSEKGL
VRQQLDSFDEVSDSKQGMMALRIRA*
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mRNA from alignment at C-tenellus_contig7192:6534..6761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7192.4.1 ID=mRNA_C-tenellus_contig7192.4.1|Name=mRNA_C-tenellus_contig7192.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=228bp|location=Sequence derived from alignment at C-tenellus_contig7192:6534..6761+ (Choristocarpus tenellus KU2346)
ATGAGCAATGGCCACGATAATGTCATAGATTTGGATGGAATGGGTGAGAA
CTACGATGAGTATGACAATGAGATCGATCCACTCGACGAGGATATCTCCC
AGGAAGATGCCTGGGTGGTCATCAGTTCCTACTTCAGTGAGAAAGGCCTT
GTTCGGCAACAGCTGGACTCCTTTGATGAGGTCAGTGACTCAAAGCAGGG
CATGATGGCCTTGAGGATCAGGGCTTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7192:6534..6761+

>mRNA_C-tenellus_contig7192.4.1 ID=mRNA_C-tenellus_contig7192.4.1|Name=mRNA_C-tenellus_contig7192.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=228bp|location=Sequence derived from alignment at C-tenellus_contig7192:6534..6761+ (Choristocarpus tenellus KU2346)
ATGAGCAATGGCCACGATAATGTCATAGATTTGGATGGAATGGGTGAGAA
CTACGATGAGTATGACAATGAGATCGATCCACTCGACGAGGATATCTCCC
AGGAAGATGCCTGGGTGGTCATCAGTTCCTACTTCAGTGAGAAAGGCCTT
GTTCGGCAACAGCTGGACTCCTTTGATGAGGTCAGTGACTCAAAGCAGGG
CATGATGGCCTTGAGGATCAGGGCTTAA
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