mRNA_C-tenellus_contig719.3.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig719.3.2
Unique NamemRNA_C-tenellus_contig719.3.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: D7FRA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA2_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.240e-33
Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYFDVLVVIIVAQLVSMFTRYGWYIYLVVPGYYVALFTYWLFQKL 366
            MAG AAKKAAKA    A  Y+PII  VN++YVLYR ++ FRTF  W   G   TS  YY+ Y G++EAA  GV GGGAYFDV  V +  QLVS F+ YG YIY++VPGYY  L  YW+F+KL
Sbjct:   29 MAGQAAKKAAKAREDAANLYYPIIFGVNLIYVLYRGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGV-GGGAYFDVFAVCVAGQLVSTFSAYGTYIYMLVPGYYACLAGYWVFRKL 149          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: A0A835Z9P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.250e-29
Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYFDVLVVIIVAQLVSMFTRYGWYIYLVVPGYYVALFTYWLFQKLVAQAGQDRVTEEDRIQNEK 423
            MA  AAKKAA+A A T   Y P+I+A+NV+YVL+R +YH+ +F  WH  G V TS  YY+SY+G+V A A+G   GG YFD+LV+  V Q+V +FT  GWYIYL+VP Y +  F      K    + QD  T E+  Q  K
Sbjct:    1 MANQAAKKAAQAQAKTTSVYLPLIIAINVIYVLWRGVYHYDSFGKWHKAGLVFTSFMYYLSYRGVVGAVAMGTGNGGYYFDLLVLTAVNQIVCLFTDKGWYIYLMVPAYVLYGFLQRAIAKSKEPSAQDLKTPEELAQEAK 141          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: W4GKJ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKJ1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.460e-17
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYFDVLVVIIVAQLVSMFTRYGWYIYLVVPGY 327
            MAG +AKKA KA +  + R    I+AVNVVY+LYRV++HF TF  WHA G+     A Y SY   V +A  G +   A  DVL+V +V Q+ ++ + Y WY+YLVVPGY
Sbjct:    1 MAGQSAKKAQKAGSELSARLNQSILAVNVVYLLYRVLWHFATFSTWHATGYALILTATYASYTMAVGSALEGTNNEYA-MDVLLVTLVVQIGTIVSDYFWYLYLVVPGY 108          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: A0A024U1X7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1X7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.050e-16
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYFDVLVVIIVAQLVSMFTRYGWYIYLVVPGY 327
            MAG +AKKA +A +  + R    IVAVN VY+LYRV++HF TF  WHA G+     A Y  Y   V +A  G +   A  DVL+V ++ Q+ ++ + Y WY+YLVVPGY
Sbjct:    1 MAGQSAKKAQRAGSELSARLNQSIVAVNAVYLLYRVLWHFGTFSTWHATGYAFILTATYACYTMAVASALEGTNNEYA-MDVLIVTLIVQVGTLLSDYFWYLYLVVPGY 108          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: A0A485KR68_9STRA (Aste57867_10754 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR68_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.220e-16
Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYFDVLVVIIVAQLVSMFTRYGWYIYLVVPGYYVALFTYWLFQKLV 369
            MAG AAKKA KA  A + R    I+ VNVVY+LYRV++ + +F  WHA G+     A Y SY   V +A  G +   A  DVL+V IV Q  ++F+ Y WY+ L+VPGY +    Y++ QK +
Sbjct:    1 MAGQAAKKAQKAGTALSTRLHQTIIPVNVVYILYRVLWCYSSFSSWHATGYAILLTATYASYTMAVGSALEGTNNEYA-MDVLIVTIVVQAGTLFSDYFWYLSLIVPGYVL----YYVGQKAI 118          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: A0A1V9YG09_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG09_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.330e-13
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAY---------------FDVLVVIIVAQLVSMFTRYGWYIYLVVPGYYV 333
            MAG AAKKA KA  + + R    IV +NVVY+LYR+++H+ +F  WH  G+       Y+SY   V +A  G +                     DVL++ +  Q+ SMFT Y WYIYLV+PGY +
Sbjct:    1 MAGQAAKKAQKAGQSLSTRLHNSIVPINVVYILYRIVWHYSSFSNWHMWGYGLLLTMTYMSYTMAVGSALQGTNNEYPKASQICLLTESIHRYAMDVLLITLGVQIGSMFTDYFWYIYLVIPGYVI 126          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: M4BRF4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRF4_HYAAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.810e-13
Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYF--DVLVVIIVAQLVSMFTRYGWYIYLVVPGY 327
            MA  AAKKA +ASA+ + R    IV +NVVY+L+R+++H ++   W  +G+V  + + Y+SY   V AA    +GG + +  D+L+V +  Q   MF+ Y W +YLV+PGY
Sbjct:    1 MANQAAKKAQRASASLSTRLQQWIVPLNVVYLLFRILWHHQSVTTWTLVGYVFLTLSTYLSYAWAVRAAE---EGGSSEYAMDILIVTLFVQTGVMFSTYFWLVYLVLPGY 108          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: A0A7J6LFY0_PEROL (Uncharacterized protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFY0_PEROL)

HSP 1 Score: 68.9 bits (167), Expect = 5.630e-11
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYFDVLVVIIVAQLVSMFTRYGWYIYLVVPGYYVALFTYWLFQKLVAQAG 381
            MAG A KK    +    K YF  +  VN +Y+ Y+V+  + TFD ++ +GF+  S   Y +Y  ++ +  +GV    +  D+ ++ +  Q +  FT YGWY+YL VP Y   L+   LF K  A AG
Sbjct:    1 MAGQAEKKNKARAEQLTKYYFFAVAIVNSIYISYKVLPQWNTFDAYNILGFILFSVVSYFTYNSIISSLKLGVPADSSN-DLFIINLTTQFLVTFTSYGWYLYLTVPAY--LLYKAGLFIKDYAFAG 124          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: G4ZBS2_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZBS2_PHYSP)

HSP 1 Score: 67.8 bits (164), Expect = 1.670e-10
Identity = 45/123 (36.59%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYF--------------DVLVVIIVAQLVSMFTRYGWYIYLVVPGY 327
            MA  AAKKA +ASA+ + R    IV +NV+Y+LY V++H+ +   W  +G+V  +A+ Y+SY  +V AA    +GG + +              DVL++ +  Q   M + Y W +YLV+PGY
Sbjct:    1 MANQAAKKAQRASASLSTRLQQWIVPINVLYLLYCVLWHYSSVTTWTLVGYVFLTASTYLSYSWVVGAAE---EGGSSEWTCLLSPGVRFRYAMDVLIITLFVQAGLMVSSYFWLVYLVIPGY 120          
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Match: A0A8K1FCE1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCE1_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 6.870e-10
Identity = 39/115 (33.91%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMGFVGTSAAYYISYKGLVEAAAIGVDGGGAYF--DVLVVIIVAQLVSMFTRYGWYIYLVVPGYYVAL 339
            MA  AAKKA KAS + +      I+ +NV+Y++YR+++H+ +  +W  +G+       Y+S+  +V A     +GG + +  DVL+V +  Q   + + Y WY++LV+PGY++ L
Sbjct:    1 MANQAAKKAQKASVSLSATLQQWILPINVLYIVYRLLWHYNSVTMWTLVGYGFLLGVTYLSFSWVVSAKE---EGGTSEYAMDVLIVTLAVQAGLLISDYFWYLFLVIPGYFLYL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig719.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FRA2_ECTSI1.240e-3357.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9P6_9STRA2.250e-2948.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W4GKJ1_9STRA1.460e-1748.62Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024U1X7_9STRA1.050e-1645.87Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KR68_9STRA4.220e-1643.90Aste57867_10754 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YG09_9STRA1.330e-1338.89Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
M4BRF4_HYAAE9.810e-1340.54Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7J6LFY0_PEROL5.630e-1134.65Uncharacterized protein n=3 Tax=Perkinsus olseni T... [more]
G4ZBS2_PHYSP1.670e-1036.59Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A8K1FCE1_PYTOL6.870e-1033.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig719contigC-tenellus_contig719:3699..4598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008871289.1
Preferred nameTMEM208
PFAMsDUF788
Model size712
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006508,GO:0006605,GO:0006624,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010256,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0061024,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098827,GO:1901564
Exons3
Evalue2.63e-18
EggNOG OGsKOG3269@1|root,KOG3269@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF788, TMEM208
Ec32 orthologEc-26_002400.1
Descriptionvacuolar protein processing
Cds size492
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790019.3284109-UTR-C-tenellus_contig719:3698..39181680790019.3284109-UTR-C-tenellus_contig719:3698..3918Choristocarpus tenellus KU2346UTRC-tenellus_contig719 3699..3918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790019.3429763-CDS-C-tenellus_contig719:3918..40951680790019.3429763-CDS-C-tenellus_contig719:3918..4095Choristocarpus tenellus KU2346CDSC-tenellus_contig719 3919..4095 -
1680790019.3549082-CDS-C-tenellus_contig719:4193..44021680790019.3549082-CDS-C-tenellus_contig719:4193..4402Choristocarpus tenellus KU2346CDSC-tenellus_contig719 4194..4402 -
1680790019.365095-CDS-C-tenellus_contig719:4492..45981680790019.365095-CDS-C-tenellus_contig719:4492..4598Choristocarpus tenellus KU2346CDSC-tenellus_contig719 4493..4598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig719.3.2prot_C-tenellus_contig719.3.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig719 3919..4598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig719.3.2

>prot_C-tenellus_contig719.3.2 ID=prot_C-tenellus_contig719.3.2|Name=mRNA_C-tenellus_contig719.3.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=164bp
MAGHAAKKAAKASAATAKRYFPIIVAVNVVYVLYRVIYHFRTFDLWHAMG
FVGTSAAYYISYKGLVEAAAIGVDGGGAYFDVLVVIIVAQLVSMFTRYGW
YIYLVVPGYYVALFTYWLFQKLVAQAGQDRVTEEDRIQNEKQQKAARKKE
RKAARGAAMRVAR*
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mRNA from alignment at C-tenellus_contig719:3699..4598-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig719.3.2 ID=mRNA_C-tenellus_contig719.3.2|Name=mRNA_C-tenellus_contig719.3.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=900bp|location=Sequence derived from alignment at C-tenellus_contig719:3699..4598- (Choristocarpus tenellus KU2346)
ATGGCTGGTCATGCCGCGAAGAAGGCTGCCAAGGCCAGTGCTGCAACTGC AAAAAGATATTTTCCCATTATTGTGGCAGTCAATGTTGTCTATGTGCTCT ACCGAGGTAAGAGTGTGTCCATAAACAATGAAAAGGAGGAGTCAACCATG ACCACCTCTCGCTAACCAGTTGTTTCTCCTCCCTCGTGCCCGGCAGTAAT ATATCATTTTCGAACGTTCGACTTATGGCACGCCATGGGTTTTGTTGGAA CATCTGCCGCATATTACATTTCCTACAAAGGCCTGGTGGAAGCTGCGGCA ATAGGGGTAGACGGGGGGGGGGCTTATTTCGACGTGTTGGTAGTCATTAT CGTGGCACAGCTGGTGAGCATGTTCACCCGATATGGATGGTACATCTATC TCGTGGTGAGTGCAGGCTGGAGATCTTCTGGTATGCCACATAACTTGTTA TAATACTCTTCAACCTCCACTAGTTTAACATTATTTCCCTGTTGTACCCA AAGGTGCCAGGGTACTACGTTGCTTTGTTCACTTACTGGCTATTCCAGAA ACTTGTGGCCCAAGCTGGACAAGATCGAGTAACAGAAGAGGATCGGATCC AAAATGAAAAACAACAAAAGGCAGCTAGGAAAAAGGAGAGAAAAGCGGCG CGAGGAGCAGCGATGCGTGTGGCACGTTAAATATATCTACCAAGTAGTGG ATTTGACACAAAATATGGTTCATGGTGATGTTTGCTAAGAAGACCATGTC TGTTCACGTGCCGTAAGGAGCACTTCGCTCTGCTCTCCTTGTTACTTTCC ATTATGGGGGCTGTTTGCCTTTATTAAATAGAAATTCCGTCTATCAAATA CGCCTGTTCAACGAACAACCCATTTCTATTCAAAGTCCAGCGTACATGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig719:3699..4598-

>mRNA_C-tenellus_contig719.3.2 ID=mRNA_C-tenellus_contig719.3.2|Name=mRNA_C-tenellus_contig719.3.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=492bp|location=Sequence derived from alignment at C-tenellus_contig719:3699..4598- (Choristocarpus tenellus KU2346)
ATGGCTGGTCATGCCGCGAAGAAGGCTGCCAAGGCCAGTGCTGCAACTGC
AAAAAGATATTTTCCCATTATTGTGGCAGTCAATGTTGTCTATGTGCTCT
ACCGAGTAATATATCATTTTCGAACGTTCGACTTATGGCACGCCATGGGT
TTTGTTGGAACATCTGCCGCATATTACATTTCCTACAAAGGCCTGGTGGA
AGCTGCGGCAATAGGGGTAGACGGGGGGGGGGCTTATTTCGACGTGTTGG
TAGTCATTATCGTGGCACAGCTGGTGAGCATGTTCACCCGATATGGATGG
TACATCTATCTCGTGGTGCCAGGGTACTACGTTGCTTTGTTCACTTACTG
GCTATTCCAGAAACTTGTGGCCCAAGCTGGACAAGATCGAGTAACAGAAG
AGGATCGGATCCAAAATGAAAAACAACAAAAGGCAGCTAGGAAAAAGGAG
AGAAAAGCGGCGCGAGGAGCAGCGATGCGTGTGGCACGTTAA
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