mRNA_C-tenellus_contig7167.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7167.1.1
Unique NamemRNA_C-tenellus_contig7167.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7167.1.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 7.970e-65
Identity = 154/383 (40.21%), Postives = 210/383 (54.83%), Query Frame = 1 
Query:    1 MDNLLPLGERYDVSSDGFRESVLPHLLWEGKKTECVPSTPSEIVHLLPSIGKDKALRRPNEPSTPRV---VEPGLPLPAPVDRNLLGLYDPSFDPSPIGVEKRGITQPVQIKRPAPCADWVEATFGKGTRPSIRSGQEATGGSI---VTILNGYIDQGSSTVEDKEEVPCSNASTAGKSMT------LDVFVKRNSRRIEHVAIYPKEMFRRNLKLNSS-----MHAHQEDAADYFEVSETIEEKDALRGLTVLLANAAHWPIQTDDSLSETRNIGQPFRTLLDVAAQEDGADSGQDPHAETNKLPSNS--IDVLFRHRNGSVGPPPSAFRVQFEPGPLGMELEQDPSGKGLVQVRRILQAGQAEDDGRPSAGTLVVAVGDWD 1092
            M+NLLP+    DV+S+ FRE+ LP+  WE K+T   P+TPSE+ HLLP IG  K  R  +  S P +   VEP LP PAPVDRN  GLYDP+ DPSPIG E+RG  QPV+I R  P  D      G G      + + A G  I   VT+LNG+  Q    + D+   P  + ++A   ++      +DVFV+  SR I+H  + P EMF R L+  S           ED+  Y +V      ++   GLTV LA  + W    D  +   +   +P    +           G +   +  KL + +    ++F+  +G+  P  +AFRVQFEPGPLG+ELE+ P  +G+V+VRR+LQAGQAE DGR SAG L+VAVG WD
Sbjct:    1 MENLLPVVAGIDVTSNHFRETSLPYQQWETKRTHHTPTTPSEVGHLLPPIGGRKPRRDESGSSLPPISPYVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRIVPRQD-----SGLGALELQGAARSAEGPHIPTAVTVLNGHRTQH---MRDRTSAPAGDCASAADVLSEDEERCIDVFVEGFSRGIDHETLLPSEMFCRALQHGSQGPPKPSSLIPEDSRHYLDV------REGYLGLTVFLARTSEWSGTIDGGVQGEKQ-DEPIEPGI-----------GDESDRDDRKLATETEITHMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGERGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWD 357
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BLAST of mRNA_C-tenellus_contig7167.1.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.650e-53
Identity = 136/350 (38.86%), Postives = 185/350 (52.86%), Query Frame = 1 
Query:   91 KKTECVPSTPSEIVHLLPSIGKDKALRRPNEPSTPRV---VEPGLPLPAPVDRNLLGLYDPSFDPSPIGVEKRGITQPVQIKRPAPCADWVEATFGKGTRPSIRSGQEATGGSIVTILNGYIDQGSSTVEDKEEVPCSNASTAGKSMT------LDVFVKRNSRRIEHVAIYPKEMFRRNLKLNSS-----MHAHQEDAADYFEVSETIEEKDALRGLTVLLANAAHWPIQTDDSLSETRNIGQPFRTLLDVAAQEDGADSGQDPHAETNKLPSNSI--DVLFRHRNGSVGPPPSAFRVQFEPGPLGMELEQDPSGKGLVQVRRILQAGQAEDDGRPSAGTLVVAVGDWD 1092
            K+T   P+TPS++ HLLP IG  K  R  +  S P +   VEP LP PAPVDRN  GLYDP+ DPSPIG E+RG  QPV+I R  P  D       +  +   RS +     ++VT+LNGY  Q      D+   P  + ++A   ++      +DVFV+  SR ++H  + P EMF R L+  S           ED+  Y +V      ++   GLTV LA  + W                     +D   Q +  D   +P     KL +      ++F+  +G+  P  +AFRVQFEPGPLG+ELE+ P  +G+V+VRR+LQAGQAE DGR SAG L+VAVG WD
Sbjct:   25 KRTHHTPTTPSDVGHLLPPIGGRKPRRDGSGSSLPPIPPCVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRVVPRQD--SGLGAQELQGEARSAEGLPIPTVVTVLNGYNTQHR---RDRTSAPAGDYASATHVLSEDEESCIDVFVEGFSRGVDHETLLPSEMFCRALQHGSQGPPKPSSLISEDSRHYLDV------REGYLGLTVFLARTSEWS------------------GTIDGGVQGEKQDECIEPGIGDGKLAAEMAITRMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGDRGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWD 345
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7167.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7E5_ECTSI7.970e-6540.21VHL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVY5_9PHAE1.650e-5338.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7167contigC-tenellus_contig7167:5413..6692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1092
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionvon Hippel-Lindau disease tumour suppressor, beta/alpha domain
Ec32 orthologEc-21_005310.1
Cds size1092
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.9638329-CDS-C-tenellus_contig7167:5412..54991680790017.9638329-CDS-C-tenellus_contig7167:5412..5499Choristocarpus tenellus KU2346CDSC-tenellus_contig7167 5413..5499 +
1680790017.9778583-CDS-C-tenellus_contig7167:5687..66921680790017.9778583-CDS-C-tenellus_contig7167:5687..6692Choristocarpus tenellus KU2346CDSC-tenellus_contig7167 5688..6692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7167.1.1prot_C-tenellus_contig7167.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7167 5413..6692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7167.1.1

>prot_C-tenellus_contig7167.1.1 ID=prot_C-tenellus_contig7167.1.1|Name=mRNA_C-tenellus_contig7167.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=364bp
MDNLLPLGERYDVSSDGFRESVLPHLLWEGKKTECVPSTPSEIVHLLPSI
GKDKALRRPNEPSTPRVVEPGLPLPAPVDRNLLGLYDPSFDPSPIGVEKR
GITQPVQIKRPAPCADWVEATFGKGTRPSIRSGQEATGGSIVTILNGYID
QGSSTVEDKEEVPCSNASTAGKSMTLDVFVKRNSRRIEHVAIYPKEMFRR
NLKLNSSMHAHQEDAADYFEVSETIEEKDALRGLTVLLANAAHWPIQTDD
SLSETRNIGQPFRTLLDVAAQEDGADSGQDPHAETNKLPSNSIDVLFRHR
NGSVGPPPSAFRVQFEPGPLGMELEQDPSGKGLVQVRRILQAGQAEDDGR
PSAGTLVVAVGDWD
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mRNA from alignment at C-tenellus_contig7167:5413..6692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7167.1.1 ID=mRNA_C-tenellus_contig7167.1.1|Name=mRNA_C-tenellus_contig7167.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1280bp|location=Sequence derived from alignment at C-tenellus_contig7167:5413..6692+ (Choristocarpus tenellus KU2346)
ATGGACAACCTCTTGCCCCTGGGAGAAAGATACGATGTTTCGAGCGATGG
TTTCCGGGAGAGCGTATTGCCACATCTACTGTGGGAGGTGATTGCTGCAC
AAGGGTAAATGTTGAACCCTCACTCGAGGCATGGTCAACACATGACTCGC
ATGCTTGACTCTTCACTCAGTTGTAAACTTATTGGCTGTTATTATATACT
CCAAACTAACCCCGACGAACCTTGCCCATCGAAGTGTCTTACCTGTTGTA
TCCCTGTCCTCTCTCATTATAAAAGGGTAAGAAGACAGAGTGCGTTCCTA
GCACCCCGTCCGAAATCGTCCATCTGCTACCATCAATTGGGAAGGACAAA
GCATTACGAAGGCCAAACGAACCTTCTACGCCAAGGGTTGTGGAGCCTGG
TCTTCCACTTCCTGCTCCTGTTGACCGCAACTTGCTCGGTTTATATGACC
CCTCATTTGACCCAAGCCCAATTGGGGTGGAGAAAAGAGGTATCACTCAG
CCCGTACAAATCAAACGGCCAGCTCCATGCGCAGATTGGGTTGAGGCAAC
CTTTGGCAAGGGTACACGACCATCGATTCGATCAGGACAGGAAGCAACAG
GAGGGTCAATCGTTACCATTTTGAATGGCTACATTGACCAGGGTAGTTCT
ACTGTAGAAGACAAGGAAGAGGTGCCTTGTAGCAACGCATCAACAGCAGG
AAAATCCATGACCCTTGACGTGTTTGTGAAAAGAAATTCGAGACGGATTG
AGCATGTGGCAATATATCCGAAGGAGATGTTTCGCCGAAACCTGAAACTC
AATTCTTCAATGCATGCTCATCAGGAGGATGCCGCAGACTACTTCGAAGT
GTCAGAGACCATAGAAGAGAAAGACGCCTTGCGCGGACTCACAGTCCTTT
TGGCCAATGCAGCGCACTGGCCTATCCAAACCGATGATTCCTTAAGCGAA
ACGCGTAACATAGGACAGCCATTCCGTACCCTGCTAGATGTGGCTGCCCA
GGAAGATGGAGCTGACTCTGGTCAAGATCCACATGCTGAAACTAACAAAC
TGCCTTCCAACTCAATAGATGTGCTCTTCAGGCATAGAAATGGCAGTGTG
GGCCCTCCTCCAAGTGCCTTCAGAGTGCAGTTTGAGCCAGGGCCACTTGG
TATGGAGCTTGAGCAGGATCCGAGCGGGAAGGGTCTGGTACAGGTTAGAC
GCATTCTCCAGGCTGGACAAGCTGAGGACGATGGGAGACCCTCTGCTGGA
ACCTTGGTTGTGGCAGTCGGTGACTGGGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig7167:5413..6692+

>mRNA_C-tenellus_contig7167.1.1 ID=mRNA_C-tenellus_contig7167.1.1|Name=mRNA_C-tenellus_contig7167.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1092bp|location=Sequence derived from alignment at C-tenellus_contig7167:5413..6692+ (Choristocarpus tenellus KU2346)
ATGGACAACCTCTTGCCCCTGGGAGAAAGATACGATGTTTCGAGCGATGG
TTTCCGGGAGAGCGTATTGCCACATCTACTGTGGGAGGGTAAGAAGACAG
AGTGCGTTCCTAGCACCCCGTCCGAAATCGTCCATCTGCTACCATCAATT
GGGAAGGACAAAGCATTACGAAGGCCAAACGAACCTTCTACGCCAAGGGT
TGTGGAGCCTGGTCTTCCACTTCCTGCTCCTGTTGACCGCAACTTGCTCG
GTTTATATGACCCCTCATTTGACCCAAGCCCAATTGGGGTGGAGAAAAGA
GGTATCACTCAGCCCGTACAAATCAAACGGCCAGCTCCATGCGCAGATTG
GGTTGAGGCAACCTTTGGCAAGGGTACACGACCATCGATTCGATCAGGAC
AGGAAGCAACAGGAGGGTCAATCGTTACCATTTTGAATGGCTACATTGAC
CAGGGTAGTTCTACTGTAGAAGACAAGGAAGAGGTGCCTTGTAGCAACGC
ATCAACAGCAGGAAAATCCATGACCCTTGACGTGTTTGTGAAAAGAAATT
CGAGACGGATTGAGCATGTGGCAATATATCCGAAGGAGATGTTTCGCCGA
AACCTGAAACTCAATTCTTCAATGCATGCTCATCAGGAGGATGCCGCAGA
CTACTTCGAAGTGTCAGAGACCATAGAAGAGAAAGACGCCTTGCGCGGAC
TCACAGTCCTTTTGGCCAATGCAGCGCACTGGCCTATCCAAACCGATGAT
TCCTTAAGCGAAACGCGTAACATAGGACAGCCATTCCGTACCCTGCTAGA
TGTGGCTGCCCAGGAAGATGGAGCTGACTCTGGTCAAGATCCACATGCTG
AAACTAACAAACTGCCTTCCAACTCAATAGATGTGCTCTTCAGGCATAGA
AATGGCAGTGTGGGCCCTCCTCCAAGTGCCTTCAGAGTGCAGTTTGAGCC
AGGGCCACTTGGTATGGAGCTTGAGCAGGATCCGAGCGGGAAGGGTCTGG
TACAGGTTAGACGCATTCTCCAGGCTGGACAAGCTGAGGACGATGGGAGA
CCCTCTGCTGGAACCTTGGTTGTGGCAGTCGGTGACTGGGAT
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