mRNA_C-tenellus_contig7157.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7157.3.1
Unique NamemRNA_C-tenellus_contig7157.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7157.3.1 vs. uniprot
Match: A0A6V1NP11_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NP11_HETAK)

HSP 1 Score: 130 bits (327), Expect = 5.940e-30
Identity = 83/238 (34.87%), Postives = 112/238 (47.06%), Query Frame = 1 
Query:  679 LSDNMSIVYSLCFMYLGGSALYGGLLVPYSKIPGLARIIYFTAVPAVTQRALLINDFMCCYLTFTCDDVTSSFPHEVPGNFSKPGGVSSTNLHDTAATAVAGAGPI-DGFCPPDLQATADGTQAGNLGRLYLEGLDLMEVDNYILLFTLFCVAVGARVAASVVLKAREAFAERLIEVDTGVSRQR-----LIGLIQGEFEYRGGGGSERRDREQVGNIDLEGRFAAKGVEVEMASFNL 1374
            +SD++   Y+L F+ LGG AL+GG+L+   KIP   R +Y  +VPA+TQRALL+ND +CCYLT TC D+                                 AGP    FCPP LQ T DGT+ GNLGRL L+ L L + DNY LL  LF  A+  R A    L  R  F ++L+  D  +  +R     L      + +      S+ R R   G +  +G        +  A  N 
Sbjct:  139 ISDDIKNTYNLGFLILGGGALFGGILIKLEKIPWFFRWVYHLSVPALTQRALLVNDLLCCYLTATCQDLGRQL-----------------------------AGPQGQAFCPPGLQITGDGTERGNLGRLALKALSLDQADNYALLLALFAAALAGRAAQLGALALRARFEDQLVHDDGYLEDERESKTWLSSSAPSQHQL-----SKNRKRPSSGELYYDGANTNNSTPISSAQSNF 342
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BLAST of mRNA_C-tenellus_contig7157.3.1 vs. uniprot
Match: A0A7S2S756_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S756_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.040e-28
Identity = 80/194 (41.24%), Postives = 110/194 (56.70%), Query Frame = 1 
Query:  676 MLSDNMSIVYSLCFMYLGGSALYGGLLVPYSKIPGLARIIYFTAVPAVTQRALLINDFMCCYLTFTC-DDVTSSFPHEVPGNFSKPGG--VSSTNLHDTAATAVAGAGPIDGFCPPDLQATADGTQAGNLGRLYLEGLDLMEVDNYILLFTLFCVAVGARVAASVVLKAREAFAERLIEVDTGVSRQRLIGLIQ 1248
            M S ++++V+   F+ LGG  L+GGLLV +S IP   + +Y+ +V AVTQRAL++NDF+CCYLT++C D V     H VP       G  V+S  +  ++AT           CP    A       GNLGR  L+ L+L +VDNY  L TLFCVAV ARVAA +VL  R+ +      VD   +R R   L++
Sbjct:   47 MSSRHIAVVHLFIFLLLGGGTLFGGLLVSFSNIPPYFQPLYYVSVTAVTQRALVVNDFLCCYLTYSCTDSVDELLQHHVPKAVVHLNGSAVTSDQILQSSAT----------LCPEGFDAGK-----GNLGRYALKLLELSDVDNYAALLTLFCVAVLARVAAVLVLWVRDWWEHGTTMVDGDRTRFRQEELVR 225
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BLAST of mRNA_C-tenellus_contig7157.3.1 vs. uniprot
Match: A0A482S3R5_9ARCH (ABC transporter permease (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3R5_9ARCH)

HSP 1 Score: 104 bits (259), Expect = 3.510e-21
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 1 
Query:  667 LLCMLSDNMSIVYSLCFMYLGGSALYGGLLVPYSKIPGLARIIYFTAVPAVTQRALLINDFMCCYLTFTCDDVTSSFPHEVPGNFSKPGGVSSTNLHDTAATAVAGAGPID-GFCPPDLQATADGTQAGNLGRLYL 1071
            L+ M +D +++ YS  F+ LG   L+GGLLV YSKIP + R +Y+ +V AVTQRAL+ ND  CCYLT TC+ + +S            G    T     A  + +    +   FCP  LQ + DG+  GNLGRLYL
Sbjct:  172 LVAMTTDVIAVAYSTLFLILGSGTLFGGLLVRYSKIPIIFRWLYYVSVAAVTQRALIANDLRCCYLTTTCNSIANSLHLNPSSEHESQGSYFDTYTPYYAFNSSSEQDEVQPAFCPAGLQFSGDGSDVGNLGRLYL 307
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BLAST of mRNA_C-tenellus_contig7157.3.1 vs. uniprot
Match: A0A7S3MIK5_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIK5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.790e-7
Identity = 46/168 (27.38%), Postives = 75/168 (44.64%), Query Frame = 1 
Query:  676 MLSDNMSIVYSL-CFMYLGGSALYGGLLVPYSKIPGLARIIYFTAVPAVTQRALLINDFMCCYLTFTCDDVTSSFPHEVPGNFSKPGGVSSTNLHDTAATAVAGAGPIDGFCPPDLQATADGTQAGNLGRLYLEGLDLMEVDNYILLFTLFCVAVGARVAASVVLKAR 1176
            +L   M + +S+   M + G+ L  G+ +   ++P     + + ++ A+ QRAL++ND  CCYL+ TC ++     +E+                                CP  L  T DGT  GNLGR YL+ + + +   ++LLF LF V    RV    +L  R
Sbjct:  401 LLRPRMVVCWSVVALMLVVGTWLGSGMFLSLQELPSAFSYVPYVSLSAMLQRALVVNDLHCCYLSTTCAELAQE--NELT-------------------------------CPKSLHFTGDGTDEGNLGRYYLQTVGMGDERPHMLLFLLFWVNAILRVVTIFILGRR 535
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7157.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6V1NP11_HETAK5.940e-3034.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2S756_9STRA7.040e-2841.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482S3R5_9ARCH3.510e-2141.91ABC transporter permease (Fragment) n=1 Tax=archae... [more]
A0A7S3MIK5_9STRA2.790e-727.38Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7157contigC-tenellus_contig7157:3983..6718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1476
Hectar predicted targeting categorysignal anchor
Exons2
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.607106-UTR-C-tenellus_contig7157:3982..40271680790017.607106-UTR-C-tenellus_contig7157:3982..4027Choristocarpus tenellus KU2346UTRC-tenellus_contig7157 3983..4027 -
1680790017.6452894-UTR-C-tenellus_contig7157:6088..67181680790017.6452894-UTR-C-tenellus_contig7157:6088..6718Choristocarpus tenellus KU2346UTRC-tenellus_contig7157 6089..6718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.617711-CDS-C-tenellus_contig7157:4027..46871680790017.617711-CDS-C-tenellus_contig7157:4027..4687Choristocarpus tenellus KU2346CDSC-tenellus_contig7157 4028..4687 -
1680790017.6336308-CDS-C-tenellus_contig7157:5947..60881680790017.6336308-CDS-C-tenellus_contig7157:5947..6088Choristocarpus tenellus KU2346CDSC-tenellus_contig7157 5948..6088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7157.3.1prot_C-tenellus_contig7157.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7157 4028..6088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7157.3.1

>prot_C-tenellus_contig7157.3.1 ID=prot_C-tenellus_contig7157.3.1|Name=mRNA_C-tenellus_contig7157.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=267bp
MLDPMCLHLAEALLCMLSDNMSIVYSLCFMYLGGSALYGGLLVPYSKIPG
LARIIYFTAVPAVTQRALLINDFMCCYLTFTCDDVTSSFPHEVPGNFSKP
GGVSSTNLHDTAATAVAGAGPIDGFCPPDLQATADGTQAGNLGRLYLEGL
DLMEVDNYILLFTLFCVAVGARVAASVVLKAREAFAERLIEVDTGVSRQR
LIGLIQGEFEYRGGGGSERRDREQVGNIDLEGRFAAKGVEVEMASFNLAG
TRGERYQRERKPGQNT*
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mRNA from alignment at C-tenellus_contig7157:3983..6718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7157.3.1 ID=mRNA_C-tenellus_contig7157.3.1|Name=mRNA_C-tenellus_contig7157.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2736bp|location=Sequence derived from alignment at C-tenellus_contig7157:3983..6718- (Choristocarpus tenellus KU2346)
TTGTTTTTTTGTAGGGGTAGGAGGCGTTTTTTTTTGTTCTAGGCTGGAGT
GGAGTTGGAAAGGGGTGCTTTTTCAAACCTGATGCATGTTGATTTTTTTG
TTGTTGGAGGGACCTTTTCATGAGACTTTTTGCTGGGCTGGAACGTACCG
TCTGGAGTATTTTTTCCATCCTTCTCAGACAAGAACGCCTCTTGCTTTTG
CCGGCACCATGTGTGGGTTTATCTTGAAAAAGCTGTGAGTTAGTTGTCCA
GTGATGCCTTTAAAAACCTTCCTGTTTGAAGTGCTAATTGTTGCTTGGGA
TACTTCCCACACCCTCGCAGTCTGTACCTTTTCCTCTTCTCTACAAAGTT
GTTCAGTGTGCCATGATTACACAATATACTCGTGTTTCAAGAATGACGCA
GTGGATTCCAGCTAATAAAACGGAAGATTTTCTATGAACTCCTTCCTCCC
CCACTCTTGAGCGCCACGTGAAGTTTTCCAAAAATAAATAAATAAATCAG
GAAACTCTTAATTATTGAACACACACAAAACAAACACAAGACCAGCTTTT
TCATCCACTCTAACCCTAACCCTAACCCTGACCCTGACCCTGACCCTGAC
CCTGACCCCTTAAAAACCTCCAATGTCTCAATGTTGGACCCGATGTGCCT
ACATCTTGCGGAGGCGTTGCTGTGCATGTTGAGCGACAACATGTCGATTG
TCTATTCCTTGTGCTTCATGTATCTGGGAGGGAGCGCCCTCTACGGAGGC
TTGCTGGTCCCATATTCCAAGGTTAGGTGTATTCCAAGGGTTTGGTTGTC
TACTCTTTCGAGTGAGAAGATTTATTTATGTCCCTTTTAAATTTTTTGCA
ATTTATTTTTTCGCTTGTGTTCTGTAGGGGTACACAAGAAATCCACTCTA
CTCTTGCTCTGGTTTGAGAATGAATGAAATTTTTTTTTTTTTGAATTATC
GAAGGTCTCTCTTTAGTTGTAGAAAAAAAAGAAAGTGCAAATCGACTGTA
CCTTTTCTTGGCTCTCATTTTTTTTTTTGCGATGATGTTTTTCTGAGTTA
ATCCCGCTGTTGTTGGTGTGGAACTCCCGTATCTCTTTGCGCATGTTGCG
TGGAAATGATTGGAAAGGTGAGAATCGCACGGTGGTGTATGTATGCCAGG
TGGAGCAATGTACAGATAGATGATTTTTTGAAGTTTTGTGAATTGTGAGA
ATAGGGTGAAGTGTGTTTACAGGTAGCTTTCTGTTTGTCGTTTTTGTGGC
GTGTACGGTTGGTTCTTGATTGCTATGACGACAGCGGTCACGAGAGAGTG
ATTTAAAAAATATTTTTATGGTTTTTCTTTTTAAATAGTTTAAATAAAAA
AATGTTTAAATAGTTTGAAAAATAGTTTTTACAAGAAATAATAATATTTG
TATAGTTAAAAAATAGTTAAAAAAAAAGAAGTATACATACGTACGTACTC
TAGTAAAATACTATATATATATGTGTGTGATTTAAAAAAAAAGAGAACTT
TTATGATGAAAAAATAATCTGCCTTTTCTTGCCTTCGCAACAGTGCTCAG
AAGATATAGACATATATTCCCCCATACGACTTAGGAGGGGTTTTTTATAT
TTAAGAAAAAATGAAGAAACAAAGGCAGCGTTTCCTGTCTTTTTACCATC
ACTTCAAATGCTTTATGGGATGGGTATGGGATGTGATGTATTTTGCCTTA
AGTATTCGGTACAGACCAGTGAGATGGTCTGGTCTCAGATTCCTTTTTTG
CCAATTTTTGTGGGGACCTTGCAAAGATGCACTGTGTGACGGAAGGTTTT
GCCCCCGAAATGGCAATTGGAGAGGAAGATATGGTTGGTTTGCTTTTTAG
AAGATTGTTTGAAACTTCAGCTACTTGAAGTAGAAATAATACTGGAAGGT
AATTCCACTTCAACAAAGCTGCAAAAATCACAGGAAGAATGCACCACATC
AATCTGCCACATCTCATTCCCACCTTTTACTCACATCTCACACTTTGGAC
ATGCCTTCCAACCCTGCCTCTTTTGTGACAGATACCAGGGCTCGCACGAA
TTATCTACTTCACAGCCGTCCCTGCTGTGACCCAAAGGGCACTGCTCATC
AACGATTTCATGTGCTGCTACCTCACTTTCACATGTGACGATGTCACCTC
CAGCTTCCCCCATGAGGTGCCTGGCAACTTCTCAAAACCTGGAGGTGTCT
CTAGTACAAATCTTCATGATACAGCAGCAACAGCTGTGGCTGGTGCTGGT
CCAATAGATGGCTTCTGTCCACCTGACCTGCAAGCCACTGCAGATGGAAC
CCAGGCTGGCAACCTTGGTCGACTCTACTTGGAAGGCCTAGACCTTATGG
AGGTGGACAACTATATCCTACTGTTTACTCTCTTTTGTGTTGCAGTAGGG
GCCAGAGTGGCTGCCAGTGTAGTGCTGAAAGCTAGAGAGGCGTTTGCCGA
GAGACTGATTGAGGTGGATACGGGTGTGTCCAGGCAAAGGTTGATAGGTT
TGATCCAAGGAGAATTTGAATATCGTGGGGGAGGGGGATCTGAGAGGAGG
GATCGGGAACAGGTTGGTAATATAGATCTAGAGGGTCGATTTGCAGCCAA
GGGAGTGGAGGTGGAGATGGCCTCATTCAACTTGGCAGGGACAAGGGGTG
AGAGGTATCAAAGAGAAAGGAAGCCAGGACAAAATACTTAATGGAAACAA
GCCCCATTACCCAATCTGGAGTGCTTTGGTTTGACG
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Coding sequence (CDS) from alignment at C-tenellus_contig7157:3983..6718-

>mRNA_C-tenellus_contig7157.3.1 ID=mRNA_C-tenellus_contig7157.3.1|Name=mRNA_C-tenellus_contig7157.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=801bp|location=Sequence derived from alignment at C-tenellus_contig7157:3983..6718- (Choristocarpus tenellus KU2346)
ATGTTGGACCCGATGTGCCTACATCTTGCGGAGGCGTTGCTGTGCATGTT
GAGCGACAACATGTCGATTGTCTATTCCTTGTGCTTCATGTATCTGGGAG
GGAGCGCCCTCTACGGAGGCTTGCTGGTCCCATATTCCAAGATACCAGGG
CTCGCACGAATTATCTACTTCACAGCCGTCCCTGCTGTGACCCAAAGGGC
ACTGCTCATCAACGATTTCATGTGCTGCTACCTCACTTTCACATGTGACG
ATGTCACCTCCAGCTTCCCCCATGAGGTGCCTGGCAACTTCTCAAAACCT
GGAGGTGTCTCTAGTACAAATCTTCATGATACAGCAGCAACAGCTGTGGC
TGGTGCTGGTCCAATAGATGGCTTCTGTCCACCTGACCTGCAAGCCACTG
CAGATGGAACCCAGGCTGGCAACCTTGGTCGACTCTACTTGGAAGGCCTA
GACCTTATGGAGGTGGACAACTATATCCTACTGTTTACTCTCTTTTGTGT
TGCAGTAGGGGCCAGAGTGGCTGCCAGTGTAGTGCTGAAAGCTAGAGAGG
CGTTTGCCGAGAGACTGATTGAGGTGGATACGGGTGTGTCCAGGCAAAGG
TTGATAGGTTTGATCCAAGGAGAATTTGAATATCGTGGGGGAGGGGGATC
TGAGAGGAGGGATCGGGAACAGGTTGGTAATATAGATCTAGAGGGTCGAT
TTGCAGCCAAGGGAGTGGAGGTGGAGATGGCCTCATTCAACTTGGCAGGG
ACAAGGGGTGAGAGGTATCAAAGAGAAAGGAAGCCAGGACAAAATACTTA
A
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