mRNA_C-tenellus_contig7157.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7157.2.1
Unique NamemRNA_C-tenellus_contig7157.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A6H5JGR5_9PHAE (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGR5_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 7.190e-57
Identity = 105/194 (54.12%), Postives = 136/194 (70.10%), Query Frame = 1
Query:   97 PLRTIRGEMELTEIEGQYRVTTPKSALTDVLTVRLHGGGGGDISRVPNQRLYYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVS-SSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEIPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDPPGVSEEDMDSAAVRS 675
            P+  +RGEM   E++G YRVTT ++A++D+LTVRL   G GD +     RLYYEA VE+ GA+VLGLAGP F+  V+  P  P VG+   SW FDG+RRRKR    S+MYG+RWK GD++GVLLDID  EI F LNGKDLG AF +  +E+ G+YPAASLHFGQ+V  NFGRAPF ++P     +  + A + +
Sbjct:   16 PIVLLRGEMLTEEMDGLYRVTTKENAVSDILTVRL-ACGAGDAATFSGSRLYYEARVESGGAVVLGLAGPGFDEGVENQPERPGVGDVMPSWAFDGARRRKRTRQISNMYGQRWKAGDMVGVLLDIDTKEISFSLNGKDLGPAFTLNDEEVKGLYPAASLHFGQAVVFNFGRAPFEYNPRERGSKPQEPAIIEA 208          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A6H5JWE1_9PHAE (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWE1_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.870e-30
Identity = 87/204 (42.65%), Postives = 114/204 (55.88%), Query Frame = 1
Query:   88 MALPLRTIRGEMELTEIEGQYRVTTPKSALTDVLTVRLHGGGGGDISRVPNQRLYYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEIPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDP--PGVSEEDMDSAAVRSKGRGRP 693
            ++ P   + G   L E+    RVT    A +   T+RL   G G   R    R YYE  + T G + LG AGP F+ +         VG+H +SW FDG R+++ CVSS+ YG+RW+ GDV+GVLLD    E+RF LNG+DLGVAF     E+ G+YPAAS++ GQ    NFG APFLF P   G S     S A+ +    RP
Sbjct:   13 LSRPTLQVMGGDALVEVIEGNRVT----ASSHFPTIRLSHVGVG--LRSTGGRWYYEVTLLTGGLMQLGWAGPLFQCSPARGQG---VGDHMHSWAFDGFRQKRWCVSSAPYGKRWRAGDVVGVLLDTGLQEMRFSLNGRDLGVAFA--GFEMGGLYPAASMNVGQGAHFNFGHAPFLFPPIRDGGSSVQPVSEALAANDATRP 205          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A835YPM5_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPM5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 8.050e-29
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  205 GGGGGDISRVPNQRLYYEALVETSGALVLGLAGPKFEAAVDAAPHLPE-VGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEIPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDP 630
            GGG G        R +YE +V T G + +G A  +F       P L   VG+H +SW +DG RR++ CV S+ YG RW+ GD +GVLLD D  E+RF LNG+DLGVAF     +  G++PAASL+ GQS R NFG+ PF + P
Sbjct:   24 GGGWGG-------RWFYEVVVRTDGLMQVGWADREF----GCDPVLGRGVGDHPHSWAYDGYRRKRWCVESAPYGGRWQAGDTVGVLLDADLLEMRFYLNGEDLGVAFV--GFQADGIFPAASLNVGQSARFNFGQGPFAYPP 153          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A2D4CI76_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CI76_PYTIN)

HSP 1 Score: 113 bits (282), Expect = 5.230e-22
Identity = 68/178 (38.20%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  250 YYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFE----IPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDPPGVSEEDM--------DSAAVRSK-GRGRPPPRSNGNGLDASSGIEV 744
            +YE  V TSG + +G     F+ + D       VG+H +SW +DG+R+R+    SS YGE+WK GDV+G LLD++  E+ F  NG  LGVAF     +PS+   G+ P  SL  G+ +R+N G  PF + P  V E D          SAA +SK   G     S   GL+ S+ ++V
Sbjct: 1590 FYEVEVVTSGLIQIGWIDSVFQGSSDQGEG---VGDHSHSWSYDGNRQRRWNSGSSSYGEKWKAGDVVGCLLDLEAKEMTFFRNGISLGVAFTDLKCVPSEPQSGLMPGISLERGEIIRVNLGHRPFAYPPTNVGEFDAVYKAIQYPASAATQSKVDVGNSSEASKPPGLEGSASVQV 1764          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A7R9YBE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBE2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.720e-21
Identity = 70/194 (36.08%), Postives = 97/194 (50.00%), Query Frame = 1
Query:   76 KSGLMALPLRTIRGEMELTEIEGQYRVTTPKSALTDVLTVRLHGGGGGDISRVPNQRLYYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEIPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDPPGVSEEDMD 657
            K GL A  +  + GE E+   E +     P   L    +  L  G G         R YYE  + + G + +G A   F  A D+       G+H++SW FDG R  +  V ++ YG RW  G+V+G LLD D  EIRF LNGKDLG+AF+    + H + P  S +  Q+ +LNFG+ PF F    + EE  D
Sbjct:  173 KGGLPAYEVEVLSGEAEIKGAEIRANCHFPTVQLA---SCGLWPGTG---------RWYYEVTLLSDGLMQIGFAAKSF--ACDSF-RGQGCGDHRHSWAFDGFRCNRWNVVATTYGSRWHAGNVVGCLLDTDLAEIRFFLNGKDLGLAFDNIDADGHALAPTVSFNIDQAAKLNFGQEPFEFP---IEEEYFD 348          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: T0Q8S5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q8S5_SAPDV)

HSP 1 Score: 108 bits (269), Expect = 2.130e-20
Identity = 70/178 (39.33%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  100 LRTIRGEMELTEIEGQYRVTTPKSALTDVLT-VRLHGGGGGDISRVPNQRLYYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEIPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDP 630
            L+ + G++E+ E    YRV   +   T  LT V +  G G           +YE ++ T G + +G     FEA    A     VG+H NSW +DG RR+K  V +  YG+RW VGDV+GVLLD D+ E+ + LNG+ LGVAFE      H ++PA SL+  Q+V+L+F +  FL+ P
Sbjct: 2188 LQVLGGDVEMEE----YRVKGLQHFPTIKLTGVSITAGTG---------MWFYEVVLLTDGLMQIGWVDTAFEAN---AIQGQGVGDHTNSWAYDGFRRKKWNVGALEYGDRWHVGDVVGVLLDTDRFEMTYFLNGRSLGVAFE-GLHLTHALFPAMSLNVDQAVQLHFAKNQFLYCP 2348          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A485KUQ5_9STRA (Aste57867_11869 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUQ5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.710e-20
Identity = 73/191 (38.22%), Postives = 106/191 (55.50%), Query Frame = 1
Query:  100 LRTIRGEMELTEIEGQYRVTTPKSALTDVLTVRLHGGGGGDISRVPNQRL-YYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEIPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDPPGVSEEDMDSAAV 669
            L  + GE+E+ E    YR+      L    TV+L+G     +S   +  + YYE ++ + G + +G     FE+    A     VG+H NSW +DG RR+K  V +  YGERW  GDVIGVLLD D+ E+++ +NG+ LGVAFE      H V+PA SL+  QSV+ +F    FL+ PP    + + SA +
Sbjct: 2185 LHVLGGEVEIDE----YRI----KGLQHFPTVKLNG-----VSITADTGIWYYEVVLLSDGLMQIGWIDTLFESD---ALQGQGVGDHTNSWAYDGFRRKKWNVGALDYGERWHSGDVIGVLLDTDRYEMQYFINGRPLGVAFEGLRLN-HAVFPAMSLNVDQSVQFHFTANQFLYLPPLDKIQPVSSAIL 2358          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A1V9ZX41_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX41_9STRA)

HSP 1 Score: 106 bits (264), Expect = 8.970e-20
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  250 YYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEI----PSDELHGVYPAASLHFGQSVRLNFGRAPFLFDPPGVSEEDMDSA 663
            +YE  V TSG + +G     F+ + D       VG+H +SW +DG+R+R+    SS YGE+WK GD+IG LLD+D  E+RF  NG DLGVA+      P +   G+ P  SL  G+ +RLN G   F+F PP    E +  A
Sbjct:  711 FYEVEVVTSGLIQIGWIDGYFQGSSDQGEG---VGDHAHSWSYDGNRQRRWNSGSSTYGEKWKAGDIIGCLLDLDASEMRFFRNGIDLGVAYTQFIINPLNLRSGMMPGISLERGEIIRLNLGHTSFVF-PPTREHESISKA 848          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A1V9ZFD7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFD7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.130e-19
Identity = 69/178 (38.76%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  100 LRTIRGEMELTEIEGQYRVTTPKSALTDVLT-VRLHGGGGGDISRVPNQRLYYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEIPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDP 630
            L+ + G +E+ E    YRV   +   T  LT V +  G G           YYE ++ T G + +G     F++    A     VG+H NSW +DG RR+K  V +  YG+RW VGDV+GVLLD D+ E+++ LNG+ LGVAFE      H ++PA SL+  Q+V+L+F +  FL+ P
Sbjct: 2188 LQVLGGNVEMEE----YRVKGLQHFPTIKLTGVSITAGTG---------MWYYEVVLLTDGLMQIGWIDSAFDSN---AIQGQGVGDHTNSWAYDGFRRKKWNVGALDYGDRWHVGDVVGVLLDTDRFEMQYFLNGRALGVAFE-GLHLTHALFPAMSLNVDQAVQLHFAKNQFLYCP 2348          
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Match: A0A8K1CHF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHF8_PYTOL)

HSP 1 Score: 105 bits (261), Expect = 1.840e-19
Identity = 69/168 (41.07%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  172 ALTDVLTVRLHGGGGGDISRVPNQRL-YYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGSRRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFE-IPSDELHGVYPAASLHFGQSVRLNFGRAPFLFDPPGVSEEDMDSAAV 669
            AL    +VRL     G +S   N  L YYE  + + G + +G     F   V        VG+H NSW FDG RR+K  VSS  YGE W+ GD++GVLLD D+ E+ + LNGK LGVAF  +P      +YPAASL+  Q+++ NFG    +      + EDM  A+V
Sbjct:  636 ALQHFPSVRL-----GKVSITANSGLWYYEVAILSEGLMQIGYVDGDF---VSDPLQGQGVGDHVNSWAFDGFRRKKWNVSSYDYGEAWRSGDIVGVLLDSDRMELSYFLNGKFLGVAFSGLPMTPTSLMYPAASLNAEQAIQFNFGARVGV-----TAREDMPKASV 790          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7157.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGR5_9PHAE7.190e-5754.12B30.2/SPRY domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5JWE1_9PHAE1.870e-3042.65B30.2/SPRY domain-containing protein n=2 Tax=Ectoc... [more]
A0A835YPM5_9STRA8.050e-2946.85Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A2D4CI76_PYTIN5.230e-2238.20Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7R9YBE2_9STRA4.720e-2136.08Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
T0Q8S5_SAPDV2.130e-2039.33Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A485KUQ5_9STRA3.710e-2038.22Aste57867_11869 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZX41_9STRA8.970e-2041.55Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
A0A1V9ZFD7_9STRA1.130e-1938.76Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A8K1CHF8_PYTOL1.840e-1941.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7157contigC-tenellus_contig7157:1980..3963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G771
PFAMsHECT,RCC1,SPRY,zf-C3HC4_3
Model size1984
Max annot lvl2759|Eukaryota
KEGG koko:K12169
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.43e-61
EggNOG OGsKOG2242@1|root,KOG2242@2759|Eukaryota
Ec32 ortholog descriptionSPRY domain
Ec32 orthologEc-01_010820.1
EC2.3.2.27
DescriptionRNA localization to chromatin
Cds size1155
COG categoryL
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.5422823-UTR-C-tenellus_contig7157:1979..20661680790017.5422823-UTR-C-tenellus_contig7157:1979..2066Choristocarpus tenellus KU2346UTRC-tenellus_contig7157 1980..2066 +
1680790017.5648756-UTR-C-tenellus_contig7157:3221..39631680790017.5648756-UTR-C-tenellus_contig7157:3221..3963Choristocarpus tenellus KU2346UTRC-tenellus_contig7157 3222..3963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.5552378-CDS-C-tenellus_contig7157:2066..32211680790017.5552378-CDS-C-tenellus_contig7157:2066..3221Choristocarpus tenellus KU2346CDSC-tenellus_contig7157 2067..3221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7157.2.1prot_C-tenellus_contig7157.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7157 2067..3221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7157.2.1

>prot_C-tenellus_contig7157.2.1 ID=prot_C-tenellus_contig7157.2.1|Name=mRNA_C-tenellus_contig7157.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=385bp
MALPLRTIRGEMELTEIEGQYRVTTPKSALTDVLTVRLHGGGGGDISRVP
NQRLYYEALVETSGALVLGLAGPKFEAAVDAAPHLPEVGNHQNSWGFDGS
RRRKRCVSSSMYGERWKVGDVIGVLLDIDKGEIRFGLNGKDLGVAFEIPS
DELHGVYPAASLHFGQSVRLNFGRAPFLFDPPGVSEEDMDSAAVRSKGRG
RPPPRSNGNGLDASSGIEVLKAAKSMVKRRESSGAAKGVSSGDEGASDVD
GFNGDGDADDDNRGEAETGQAMYELQKATIERLLGEENFKVSLRQLQAKH
ANQRRDLLMTQRKQLQDLKTKREQKVRQEASKALAQQNRAKRNVSPTGSA
ISAQNGGAGKKRPRTANAQGAQGQASQGQGDTMQ*
back to top

mRNA from alignment at C-tenellus_contig7157:1980..3963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7157.2.1 ID=mRNA_C-tenellus_contig7157.2.1|Name=mRNA_C-tenellus_contig7157.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1984bp|location=Sequence derived from alignment at C-tenellus_contig7157:1980..3963+ (Choristocarpus tenellus KU2346)
GGAACACAGGGACCATCTTCAGTGTTAAAGGGTGGTTACACTAGGAGATC GGCAACTCTTGGGAGGAGTGAATCCAAAAGTGGACTCATGGCGCTTCCTC TGCGCACGATACGAGGGGAGATGGAACTCACAGAGATCGAAGGACAGTAT AGGGTAACCACACCCAAGTCGGCTCTCACCGATGTGCTCACAGTCCGACT GCACGGGGGAGGAGGAGGAGACATCAGCAGGGTCCCCAATCAGCGTCTGT ACTATGAAGCTTTAGTTGAGACTAGTGGTGCACTCGTACTTGGTCTCGCT GGTCCCAAGTTCGAGGCTGCAGTAGATGCAGCTCCCCATCTTCCAGAGGT TGGCAACCATCAGAACAGCTGGGGTTTCGATGGATCCAGGAGGAGGAAAC GCTGTGTGTCATCCTCCATGTATGGAGAAAGGTGGAAAGTTGGTGATGTA ATCGGCGTCTTGCTGGATATCGATAAGGGGGAAATCCGTTTCGGACTTAA TGGGAAGGATCTAGGAGTGGCCTTCGAGATTCCCTCAGATGAGCTGCATG GGGTTTATCCCGCTGCCTCGCTACATTTCGGACAGTCGGTACGCTTGAAC TTTGGTCGAGCGCCCTTCCTCTTCGATCCTCCTGGTGTATCCGAAGAGGA TATGGATTCTGCAGCAGTCAGGTCGAAGGGAAGGGGAAGGCCCCCTCCCC GGTCGAACGGCAATGGACTCGATGCAAGCAGTGGGATAGAGGTTTTGAAG GCGGCCAAATCTATGGTTAAGCGCCGTGAAAGCAGTGGTGCTGCGAAGGG AGTCTCTTCAGGAGACGAAGGGGCAAGTGATGTGGATGGTTTCAACGGCG ACGGAGATGCAGACGACGACAACCGAGGGGAAGCCGAGACGGGACAGGCA ATGTACGAGCTTCAGAAGGCGACGATTGAGCGCCTCTTGGGCGAGGAAAA TTTCAAGGTCTCTTTGAGGCAGCTGCAGGCCAAGCATGCCAACCAACGCC GAGATCTCCTCATGACTCAACGTAAACAGCTTCAGGATCTCAAAACCAAG AGGGAGCAAAAGGTGCGGCAAGAGGCCAGTAAAGCGTTGGCGCAACAGAA CCGTGCCAAGCGTAACGTGTCCCCCACCGGATCCGCGATTTCAGCCCAGA ATGGTGGAGCAGGCAAGAAACGACCGCGAACGGCAAATGCTCAGGGAGCG CAAGGCCAGGCATCACAAGGTCAAGGCGACACCATGCAGTGATGGAGCAC TCTGACTTGGATGTCAGATGACACCGCTCGTTCAGGGATGGTCTCTCAAC AACCACGTGGCTGGCACTGACATCTTCATGCCAGTGCATGATCAGACACG GTAGCTTCTCCACATTCCATAGATGAGAAGGTCCTTGTTTAAGGTGTGCT GCCAACCAGTGTGGGAAGGGGGATTGTGAGTACATTTCTGTCTCCAGCAT TTTCTCTGAAGTGTGGGTGTGTAAACCTGTCTATGTTCTTATGTCTGAAG GGAAGGTAGGAAGGGAGAACACCCGCAACTCTCTGTCCTAGGCAGAGTAA TTAGAGTTGAATGCAATTGTACAGAAGAGTCCCAAGAGTTAAGCTGTGGG TGGATTGGACACAAGCATGCAAACTAGATTTTCGACTTTTCTTTTGATTA CACATGCAGCTTTTGGTAGTGTATCAACAATTGCGTTGGGTTTTTGTAAG AGGTAGCTTTAAAGGGAAGGTACAGTGTATTGTGTGTGTGTTTGTACGTA TTTGTGTGTGTTTATGTATGGAGAGAGCATTGCAGATGTATCCAATGATG ACACTGAACAGTTTATTGGCGCCAATATGCAGGCAATCTACGTTGATATC CCTATTCTTCTGTGGTTGTGATGCCCTTGTCATTAATGGTAGATACTTGA TAATATAGTTGAGTGTGTACTCACAATTGTCAAAATTTGATTATAGGTAT TAACAAAATCAACTAAAAAAAATTGGAGGGTGGC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7157:1980..3963+

>mRNA_C-tenellus_contig7157.2.1 ID=mRNA_C-tenellus_contig7157.2.1|Name=mRNA_C-tenellus_contig7157.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1155bp|location=Sequence derived from alignment at C-tenellus_contig7157:1980..3963+ (Choristocarpus tenellus KU2346)
ATGGCGCTTCCTCTGCGCACGATACGAGGGGAGATGGAACTCACAGAGAT
CGAAGGACAGTATAGGGTAACCACACCCAAGTCGGCTCTCACCGATGTGC
TCACAGTCCGACTGCACGGGGGAGGAGGAGGAGACATCAGCAGGGTCCCC
AATCAGCGTCTGTACTATGAAGCTTTAGTTGAGACTAGTGGTGCACTCGT
ACTTGGTCTCGCTGGTCCCAAGTTCGAGGCTGCAGTAGATGCAGCTCCCC
ATCTTCCAGAGGTTGGCAACCATCAGAACAGCTGGGGTTTCGATGGATCC
AGGAGGAGGAAACGCTGTGTGTCATCCTCCATGTATGGAGAAAGGTGGAA
AGTTGGTGATGTAATCGGCGTCTTGCTGGATATCGATAAGGGGGAAATCC
GTTTCGGACTTAATGGGAAGGATCTAGGAGTGGCCTTCGAGATTCCCTCA
GATGAGCTGCATGGGGTTTATCCCGCTGCCTCGCTACATTTCGGACAGTC
GGTACGCTTGAACTTTGGTCGAGCGCCCTTCCTCTTCGATCCTCCTGGTG
TATCCGAAGAGGATATGGATTCTGCAGCAGTCAGGTCGAAGGGAAGGGGA
AGGCCCCCTCCCCGGTCGAACGGCAATGGACTCGATGCAAGCAGTGGGAT
AGAGGTTTTGAAGGCGGCCAAATCTATGGTTAAGCGCCGTGAAAGCAGTG
GTGCTGCGAAGGGAGTCTCTTCAGGAGACGAAGGGGCAAGTGATGTGGAT
GGTTTCAACGGCGACGGAGATGCAGACGACGACAACCGAGGGGAAGCCGA
GACGGGACAGGCAATGTACGAGCTTCAGAAGGCGACGATTGAGCGCCTCT
TGGGCGAGGAAAATTTCAAGGTCTCTTTGAGGCAGCTGCAGGCCAAGCAT
GCCAACCAACGCCGAGATCTCCTCATGACTCAACGTAAACAGCTTCAGGA
TCTCAAAACCAAGAGGGAGCAAAAGGTGCGGCAAGAGGCCAGTAAAGCGT
TGGCGCAACAGAACCGTGCCAAGCGTAACGTGTCCCCCACCGGATCCGCG
ATTTCAGCCCAGAATGGTGGAGCAGGCAAGAAACGACCGCGAACGGCAAA
TGCTCAGGGAGCGCAAGGCCAGGCATCACAAGGTCAAGGCGACACCATGC
AGTGA
back to top