mRNA_C-tenellus_contig7155.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7155.1.1
Unique NamemRNA_C-tenellus_contig7155.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7155.1.1 vs. uniprot
Match: A0A6V1MPI0_HETAK (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MPI0_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 3.070e-15
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 LTEEEAVAVGATLSLYDVTEQDRVPTELGSTGEVKRRKLAVQAKEAYQKGKDPREVREKTLSYAEFDL 204
            LTEEE   V    ++YD TE++RV TE G+ GE  R+K A +A+ AYQKGKDPREVR++TL+YAE DL
Sbjct:  102 LTEEEQAVVVGINNVYDATEKERVLTEAGTVGETARKKKAAEARAAYQKGKDPREVRDRTLNYAEMDL 169
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BLAST of mRNA_C-tenellus_contig7155.1.1 vs. uniprot
Match: A0A835YIT5_9STRA (DOT1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIT5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.290e-13
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 LTEEEAVAVGATLSLYDVTEQDRVPTELGSTGEVKRRKLAVQAKEAYQKGKDPREVREKTLSYAEFD 201
            L+EEEA A+ A  SLYDVT+ D+  TE G+ GEVKR++ A + K  YQ+GKD REVR+KTL+YAE +
Sbjct:   67 LSEEEASALEAVSSLYDVTDADKAVTERGTAGEVKRKQAAEKFKLDYQRGKDVREVRDKTLAYAEVE 133
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BLAST of mRNA_C-tenellus_contig7155.1.1 vs. uniprot
Match: A0A4D9D1A5_9STRA (DOT1 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1A5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.030e-12
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 LTEEEAVAVGATLSLYDVTEQDRVPTELGSTGEVKRRKLAVQAKEAYQKGKDPREVREKTLSYAEFDL 204
            L+E+E  AV A  +LYD  E+D   TE G+ G V+R++LA +AKE+YQ+G+D REVR+KTL YAE DL
Sbjct:  103 LSEDEQAAVDAVEALYDPKEEDLALTEAGTVGFVRRKQLAEKAKESYQQGRDDREVRDKTLYYAEIDL 170
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BLAST of mRNA_C-tenellus_contig7155.1.1 vs. uniprot
Match: A0A7S1XJM1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJM1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-8
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:    1 LTEEEAVAVGATLSLYDVTEQDRVPTELGSTGEVKRRKLAVQAKEAYQKGKDPREVREKTLSYAEFDL 204
            LTEEE  AV A    +D T  D+  TE G+ GEV+R+  AV+AK+ +  GK+ REVR+KTL+YAE DL
Sbjct:  106 LTEEEDAAVTAAALAFD-TAADQELTEAGTIGEVRRKAEAVKAKDRFNAGKEGREVRDKTLAYAEVDL 172
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BLAST of mRNA_C-tenellus_contig7155.1.1 vs. uniprot
Match: A0A0G4EMU0_VITBC (DOT1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMU0_VITBC)

HSP 1 Score: 58.2 bits (139), Expect = 2.710e-8
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    1 LTEEEAVAVGATLSLYDVTEQDRVPTELGSTGEVKRRKLAVQAKEAYQKGKDPREVREKTLSYAEFDL 204
            L++ EA AV     +YD +E+D+  TE GS G  +R+  A +  E + +GKDPREVR KT++Y+E DL
Sbjct:   69 LSDSEAAAVSLVNGIYDASEEDKRMTERGSIGRTRRQLEADRIAEEFAEGKDPREVRGKTITYSEVDL 136
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BLAST of mRNA_C-tenellus_contig7155.1.1 vs. uniprot
Match: A0A7S2UU31_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UU31_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.370e-7
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 LTEEEAVAVGATLSLYDVTEQDRVPTELGSTGEVKRRKLAVQAKEAYQKGKDPREVREKTLSYAEFDL 204
            LTEEE   V   ++ +D    ++  TE G+ G V RR+ AV++KEAYQKGK  R++++K+L Y+E DL
Sbjct:  153 LTEEEEETVYRVVNGFDSKPWEKELTEAGTKGYVNRRRQAVESKEAYQKGKLARDIKDKSLRYSEADL 220
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6V1MPI0_HETAK3.070e-1558.82Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A835YIT5_9STRA6.290e-1358.21DOT1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A4D9D1A5_9STRA1.030e-1255.88DOT1 domain-containing protein n=3 Tax=Monodopsida... [more]
A0A7S1XJM1_9STRA1.190e-852.94Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4EMU0_VITBC2.710e-845.59DOT1 domain-containing protein n=2 Tax=Vitrella br... [more]
A0A7S2UU31_9STRA5.370e-745.59Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7155contigC-tenellus_contig7155:176..1167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.3825076-CDS-C-tenellus_contig7155:175..2861680790017.3825076-CDS-C-tenellus_contig7155:175..286Choristocarpus tenellus KU2346CDSC-tenellus_contig7155 176..286 -
1680790017.392048-CDS-C-tenellus_contig7155:1068..11671680790017.392048-CDS-C-tenellus_contig7155:1068..1167Choristocarpus tenellus KU2346CDSC-tenellus_contig7155 1069..1167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7155.1.1prot_C-tenellus_contig7155.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7155 176..1167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7155.1.1

>prot_C-tenellus_contig7155.1.1 ID=prot_C-tenellus_contig7155.1.1|Name=mRNA_C-tenellus_contig7155.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=70bp
LTEEEAVAVGATLSLYDVTEQDRVPTELGSTGEVKRRKLAVQAKEAYQKG
KDPREVREKTLSYAEFDLK*
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mRNA from alignment at C-tenellus_contig7155:176..1167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7155.1.1 ID=mRNA_C-tenellus_contig7155.1.1|Name=mRNA_C-tenellus_contig7155.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=992bp|location=Sequence derived from alignment at C-tenellus_contig7155:176..1167- (Choristocarpus tenellus KU2346)
CTTACTGAGGAGGAGGCAGTTGCTGTTGGAGCAACATTAAGCCTGTACGA
TGTTACGGAGCAGGATAGAGTGCCCACAGAGCTTGGTAGTACTGGAGAGG
TAAGGAAGCCCCTTCCCACCTGGACTCCACCTCCAGGCTGGAGGGGCAAG
TGGTGTTTGGGTGCTATTATGGGGGGGGGTGAGATCACTGTGCATAGACT
GCGTGGAAGCTTGCAGCAATGACTTGATGGGGGTTATGTAGCTCATGAAG
TAGAGGTTCTAATGAGCCTTTTTATTTAATGATGTCAGTTAGTTCTGGGG
ATGGGTGTGGGAAGTTGCCCAAGGGCTGAGCTTTTAGGATTGAAGAAAGA
GGAAGCCTACTGCACTGTAGGGTGTTAAAAATCTTTATATATATATATAT
ATATATATATATATATTTTTTAATGATATTTGGAACTTTAGACTGACTTA
CTTCTCTGTCGGGTATTGGATGGTACATTGTAGTTCAGTCATGTGTGTCT
TCGACACACAATCAGCCAGCCTGCATACATTTTCCCCCATGCATGCTTCC
GGTGCTCAGGAAAACCACGTCGGGGTTTCCAACACCTTGGTAGTTATTTA
AATGTATTTTTTTAATATACATTTTCTTACATTCGCAGGTTTTTCATGAA
TCAGATGTACGGTGTGAGTGAAGGTGTAAGATAGAGGACAGGTTCCTGCA
ACCCCAGAGCAAAGTGGAAGAACCCCCCCCTGCCCGAGGGTCAAACTGGT
GTAGACTCTCTGGCACGCAGTGTTTGATTAGGTGGACTAGACTACACCTC
TACCTAAACAGCTCTCAAGTATTTATTTGGGGGGTAATGCAATTCGCTGT
ATCTCCTATTGTTGTGTTGACACATGCACAGGTGAAACGCCGTAAGCTAG
CAGTGCAGGCAAAGGAGGCATACCAGAAGGGGAAGGATCCAAGAGAGGTC
AGGGAGAAGACCCTCTCCTATGCAGAGTTTGACCTGAAGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7155:176..1167-

>mRNA_C-tenellus_contig7155.1.1 ID=mRNA_C-tenellus_contig7155.1.1|Name=mRNA_C-tenellus_contig7155.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=210bp|location=Sequence derived from alignment at C-tenellus_contig7155:176..1167- (Choristocarpus tenellus KU2346)
CTTACTGAGGAGGAGGCAGTTGCTGTTGGAGCAACATTAAGCCTGTACGA
TGTTACGGAGCAGGATAGAGTGCCCACAGAGCTTGGTAGTACTGGAGAGG
TGAAACGCCGTAAGCTAGCAGTGCAGGCAAAGGAGGCATACCAGAAGGGG
AAGGATCCAAGAGAGGTCAGGGAGAAGACCCTCTCCTATGCAGAGTTTGA
CCTGAAGTGA
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