mRNA_C-tenellus_contig7142.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7142.1.1
Unique NamemRNA_C-tenellus_contig7142.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: D8LJS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.720e-12
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:   19 GKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            GKNVSFLAASASRAAIH+VLSLKGN+ADVTAKSGAQ+IL+ M G
Sbjct:  126 GKNVSFLAASASRAAIHNVLSLKGNLADVTAKSGAQTILACMAG 169
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A6H5L0I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.740e-12
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:   19 GKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            GKNVSFLAASASRAAIH+VLSLKGN+ADVTAKSGAQ+IL+ M G
Sbjct:  297 GKNVSFLAASASRAAIHNVLSLKGNLADVTAKSGAQTILACMAG 340
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A812RL60_SYMMI (RUS4 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RL60_SYMMI)

HSP 1 Score: 54.7 bits (130), Expect = 1.230e-8
Identity = 27/44 (61.36%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   19 GKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            GKN+SFL+ASASRAAIH   ++  N+AD+TAKSG+Q++L+S++G
Sbjct:   28 GKNISFLSASASRAAIHKSFAIHENLADITAKSGSQTVLASLLG 71
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A1E7FDT7_9STRA (DUF647-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FDT7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.280e-8
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   19 GKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            GKN+ FL ASASRAA+H  L++ GN+ DVTAKSG+QSIL+S++G
Sbjct:  124 GKNIGFLTASASRAALHQSLAISGNLGDVTAKSGSQSILASLVG 167
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A7S3M9Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9Q2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.710e-8
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   22 KNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            KN+SFLAASASRAAIH   +L+ N+ADVTAK+G+QSI+SS+IG
Sbjct:  219 KNISFLAASASRAAIHKSFALQENLADVTAKTGSQSIVSSLIG 261
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A835Z4M0_9STRA (Root UVB sensitive family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.130e-7
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   22 KNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            KNVSFLAASASRA IHS L+L  N+ADVT K G+Q+I+SSMIG
Sbjct:  148 KNVSFLAASASRATIHSHLALGKNLADVTVKKGSQNIVSSMIG 190
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A835YMG5_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   19 GKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            GKNVSFLAA+ASRAAIH+  + + N+ADVT K+GAQ+ILSSM G
Sbjct:  206 GKNVSFLAATASRAAIHNAFAARENLADVTGKAGAQNILSSMGG 249
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A482SMJ0_9ARCH (RUS1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMJ0_9ARCH)

HSP 1 Score: 54.7 bits (130), Expect = 2.370e-7
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   19 GKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            GKN+SFLAASASRAAIH   + + N+AD+TAK+G+Q+ILSSM G
Sbjct:  201 GKNISFLAASASRAAIHISFAKQHNLADITAKAGSQNILSSMAG 244
[Close]
BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A835YUA2_9STRA (Vitamin B6 photo-protection and homoeostasis-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.330e-7
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   19 GKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            GKNVSFLAASASRAAIH+  + + N+AD+T K+G+Q I+SSM G
Sbjct:  125 GKNVSFLAASASRAAIHNAFAKRENLADITGKAGSQVIISSMAG 168
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BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Match: A0A5A8CKM9_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKM9_CAFRO)

HSP 1 Score: 53.1 bits (126), Expect = 8.320e-7
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   19 GKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG 150
            GKN+SFL+ASA+RA IH  L+  GN+ADVTA++G+QSI +S+ G
Sbjct:  208 GKNISFLSASATRAGIHQALATSGNLADVTARAGSQSIAASLAG 251
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LJS3_ECTSI5.720e-1286.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0I8_9PHAE5.740e-1286.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812RL60_SYMMI1.230e-861.36RUS4 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A1E7FDT7_9STRA1.280e-865.91DUF647-domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S3M9Q2_9STRA4.710e-872.09Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835Z4M0_9STRA1.130e-774.42Root UVB sensitive family n=1 Tax=Tribonema minus ... [more]
A0A835YMG5_9STRA1.270e-770.45Vitamin B6 photo-protection and homoeostasis-domai... [more]
A0A482SMJ0_9ARCH2.370e-768.18RUS1 family protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A835YUA2_9STRA4.330e-765.91Vitamin B6 photo-protection and homoeostasis-domai... [more]
A0A5A8CKM9_CAFRO8.320e-761.36Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7142contigC-tenellus_contig7142:381..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJS3
PFAMsDUF647
Model size150
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.38e-13
EggNOG OGsKOG4249@1|root,KOG4249@2759|Eukaryota
Descriptionresponse to UV-B
Cds size150
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.6080873-CDS-C-tenellus_contig7142:380..5301680790015.6080873-CDS-C-tenellus_contig7142:380..530Choristocarpus tenellus KU2346CDSC-tenellus_contig7142 381..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7142.1.1prot_C-tenellus_contig7142.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7142 381..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7142.1.1

>prot_C-tenellus_contig7142.1.1 ID=prot_C-tenellus_contig7142.1.1|Name=mRNA_C-tenellus_contig7142.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=50bp
ARVHFSGKNVSFLAASASRAAIHSVLSLKGNIADVTAKSGAQSILSSMIG
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mRNA from alignment at C-tenellus_contig7142:381..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7142.1.1 ID=mRNA_C-tenellus_contig7142.1.1|Name=mRNA_C-tenellus_contig7142.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=150bp|location=Sequence derived from alignment at C-tenellus_contig7142:381..530- (Choristocarpus tenellus KU2346)
GCGCGTGTGCATTTTTCAGGTAAGAATGTGTCGTTCCTAGCAGCGTCTGC
ATCACGAGCGGCCATCCACAGCGTTCTGTCCCTCAAGGGGAACATTGCAG
ACGTCACTGCAAAGTCAGGGGCGCAGAGCATCCTCTCCTCCATGATTGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig7142:381..530-

>mRNA_C-tenellus_contig7142.1.1 ID=mRNA_C-tenellus_contig7142.1.1|Name=mRNA_C-tenellus_contig7142.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=150bp|location=Sequence derived from alignment at C-tenellus_contig7142:381..530- (Choristocarpus tenellus KU2346)
GCGCGTGTGCATTTTTCAGGTAAGAATGTGTCGTTCCTAGCAGCGTCTGC
ATCACGAGCGGCCATCCACAGCGTTCTGTCCCTCAAGGGGAACATTGCAG
ACGTCACTGCAAAGTCAGGGGCGCAGAGCATCCTCTCCTCCATGATTGGT
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