mRNA_C-tenellus_contig7134.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7134.1.1
Unique NamemRNA_C-tenellus_contig7134.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7134.1.1 vs. uniprot
Match: A0A6H5JPB7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB7_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.210e-20
Identity = 48/79 (60.76%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 ANQVTRKSTATLVVEIAKGIVQWGGWGWDE-------RRKGGSAALGLDRGAAEFACTASCSHGHKKCVVCHLLTRDQP 216
            AN VT+ STATLVVE+AK +V  G WG          R++GG    GLD G AEF CTASCSHGHK C VCHLLTRD+P
Sbjct:  337 ANLVTKVSTATLVVEVAKSLV--GNWGSSSGKRPPSWRQRGGGMFGGLDGGRAEFTCTASCSHGHKSCEVCHLLTRDKP 413
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BLAST of mRNA_C-tenellus_contig7134.1.1 vs. uniprot
Match: D8LAY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY7_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 4.200e-20
Identity = 52/96 (54.17%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 ANQVTRKSTATLVVEIAKGIVQWGGWG---------WDERRKGGSAALGLDRGAAEFACTASCSHGHKKCVVCHLLTRDQPP-------PSRKRME 240
            AN VTR STATLVVE+AK +V  G WG         W  R++GG     LD G AEF CT SCSHGHK C VCHLLTRD+P        P+RKR++
Sbjct:  337 ANLVTRVSTATLVVEVAKSLV--GNWGSPSGKRPPSW--RQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 428
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BLAST of mRNA_C-tenellus_contig7134.1.1 vs. uniprot
Match: A0A836C6P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6P6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.570e-12
Identity = 38/80 (47.50%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:    1 ANQVTRKSTATLVVEIAKGIVQW-------GGWGWDERRKGGSAALGLDRGAAEFACTASCSHGHKKCVVCHLLTRDQPP 219
            AN VT  STATL+V +AK I++                   G +AL LD G  E  C   C HGH KCVVCHLLTRD PP
Sbjct:  220 ANVVTGLSTATLMVRLAKAILEVFASHPKATSTASQHNGHSGGSALALDGGRGELTCGPQCRHGHGKCVVCHLLTRDMPP 299
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7134.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPB7_9PHAE3.210e-2060.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LAY7_ECTSI4.200e-2054.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C6P6_9STRA1.570e-1247.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7134contigC-tenellus_contig7134:143..2934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LAY7
PFAMsFMO-like,Pkinase
Model size243
Max annot lvl2759|Eukaryota
KEGG rclassRC02233
KEGG koko:K00485,ko:K14003
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,ko04141,map00982,map01120,map04141
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.88e-21
EggNOG OGsCOG2072@1|root,KOG1399@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005950.1
EC1.14.13.8
DescriptionN,N-dimethylaniline monooxygenase activity
Cds size243
COG categoryP
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.2127597-CDS-C-tenellus_contig7134:142..2441680790015.2127597-CDS-C-tenellus_contig7134:142..244Choristocarpus tenellus KU2346CDSC-tenellus_contig7134 143..244 +
1680790015.2256427-CDS-C-tenellus_contig7134:2793..29341680790015.2256427-CDS-C-tenellus_contig7134:2793..2934Choristocarpus tenellus KU2346CDSC-tenellus_contig7134 2794..2934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7134.1.1prot_C-tenellus_contig7134.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7134 143..2934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7134.1.1

>prot_C-tenellus_contig7134.1.1 ID=prot_C-tenellus_contig7134.1.1|Name=mRNA_C-tenellus_contig7134.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp
ANQVTRKSTATLVVEIAKGIVQWGGWGWDERRKGGSAALGLDRGAAEFAC
TASCSHGHKKCVVCHLLTRDQPPPSRKRME*
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mRNA from alignment at C-tenellus_contig7134:143..2934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7134.1.1 ID=mRNA_C-tenellus_contig7134.1.1|Name=mRNA_C-tenellus_contig7134.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2792bp|location=Sequence derived from alignment at C-tenellus_contig7134:143..2934+ (Choristocarpus tenellus KU2346)
GCCAATCAGGTGACTCGAAAGTCTACGGCTACTCTAGTGGTGGAAATCGC
CAAGGGTATTGTACAATGGGGAGGTTGGGGGTGGGACGAGAGGAGAAAGG
GCGTAGAACGATCTTCGTCGTTCGCGAGCCGCCTGAGCAAGGTGACCGAA
ACCTCCTTTTTTTTTCTCTCTTTTGCAGGAGCTAGGACGCAATTGAACAA
AAACGAATGAACTGCTCGTTTTGAAAAATCGATATTATCCTCCATATATA
TTTACATACTTTACATACATATATATGTATGTGCCCGAGAGGATTACAAA
AAAAAAATTAAAAACTTTTTCTTTTAAAAAATTAAAAACTTTTTCTTTTA
AAAAATTAAAAAATTAAAAATTAAAAACTTTTTGTTTTTCAACATCCATC
TGAGTACCACATAAAGATTGAAAATCGCGACATTGGAGTTTGGACTCCCC
AAAATGGACGCTGCTCCACCCTCTAAGATACTTTGGCTCGAAGCGGTCAT
GATGTATATATATGGGGAATGTGTTACAGTTTTGTTTGTGATGATGTATT
TTGACTTTGAAAGGGGCCACACGGTTCATCATAATCAATTCACATCTTTA
TCTAAGTAATAGTAGTAGTAGTAATGATGATGATAATGGTAATAATAAAA
TAATAATAATACTATGGTAACTAATTTTTTTTCAAGGTTTTTATAATTTT
GCAAAGGACGAGAACGAGGAGTGATGGGGAGAGTGACGATGATTAAATAA
TGGGATTTTTTTTTTGTAATTGCATGTATTGTAAGTAGGCGTTCTCTGTC
CACCACTGTTAAAGAAATTGGTGTTCCCAAGACTTGAGAATGTAAATAAC
TCGATGAATTCCTCATTATGCAGAACAGGTTGTACATGAAGTAAGGAAGG
TGTAAGGAAGGAGAGTGAGCTTCAAAGCTCAAAGGGGGTCATCACCTTAC
GATTCATATATTCTAATAACATGTCACTCAATCCACGATTACTTGCCATG
TTACTCGCTACAGCATTCCTTTTCTAGGATTGTTCTTGTTGCACTATAAT
AACCCGGATAATATTTCCGTTGTCACCTGACAAAAACATTACTATCAGTT
ATCCCATTATCCAACAATACTTCAACAACTCAATGTTTTTCCCACAGGAT
CATATTTTACACATGAATAAAAGCATATTCTTAGGGTCAAAGTATCTGGG
GGGGGGTCGGCATCCGTTTTTCACCCTTTTTCGATTTTCACTTTTTTGGT
GTGATTTGGTCACACGTGTCGGATTTGAAACGTCGGAAGAAAAAAGTTGT
TCGACCGAAACGGACGCCTCCTCACAAACCACTCCCCACACCCCCCCCAG
ATACTTTGATCCTTAACAACCACTGTCCTCCGCACACGTATGTATATATA
TATATGCATGTGTTACTGTGTTACGTATTATTATGTATACGTGTGTACAT
TATTATGATATACAATTCCTGGTATCCATTGATCAATATTTCCAATAATC
GGATTTCAACAGGAAACCGAGGAGCGTGTGTGCTTTCAAGCGTTCAAATC
TTTCACTATATATATATTTTTTTCTCTCACCAGGCCATATCTCAGGGTTA
GGGAGGGTTCTTCTCTCTGTATAAAACACATTTTCGATCTAGTGCCTGCG
GTATGGTACAACCTCGAAAAAGGGCTGTTGGTGGTGCAAGCAAGTAAATT
GATTGTTATGTTACCATTTTGGGCTTAAGTTAAGCACAGCACGTAAGTAC
CCTCCTCCCCCCCTCTTATCACTCCACCAAAAGTACCGATCCCCCAAGCC
AGCAACAGGCGGAAATTTCGAAACTCCCCCCAAGATTTCAAATCGCCAAG
TTTAAAAAATAATAATAATAATTCATCGGGGATGCGGGGGCCCGATTGTA
CCTGGCGCCGGTTCACAATTTTTTCTCTTTTTTTGTTATATGGCTCTGCC
GGTCAGTAAGGTGGTAAGTTTTTTTTTTAATGATCAAATTCTTGAAGGGC
TACTTGCTCGTGTGTCCTCTTATCAAATTCTTGAAGGGGCTATTCGTTCG
TGTCTTCATCTCAATTTTTTTTTACTTGATTCTTTCCTTTGCATATCTTG
GGAGGTGAAAAAAAAAAAGTGTACGTGATCTCGAGAAGTGTTGCTTTTTA
TTTTTTTTGAGAATTGGAGAGTATTGACTATATTCGGAGTTGTTACGGGA
CACCAAACACACCTCCGATTAGTTATCACAGTTTTAATTATTACCAAAAA
ATATTATTTTGAACGACCAACCCTTCACTTAAATTCTGGGGCACAACCCC
TTCTTCCCCCTGCCCTCCCCCCCCCCAGCCCCACATGCAGACACCTCCAA
AACTTCCTCTTCATACTGCACGTGCTATCACGCCTGCATGCGCTTCGCCT
CGTCAATTAAAAAAAAATAAAAAATGAGTGAAGGGGCGACATCATCAGTA
GCCTCGTTAAAATCAACCCTCAAGTGTTCATCACTGTACTTTGGTAGGCA
CTATCATCACCACCATATCACTCTTCACCCTTTTTCGTGTATGGCCCCTC
CCCGCCCCCCACTCCATTTTTACCAGGACTCATTTCAATGCGTGGTGCAT
TTTCACACAATCTCTTCCGACTCCAACCGTTCCTCCTCCCTCCAACCACA
GGGCTCAGCAGCACTTGGACTAGACAGAGGAGCTGCTGAATTTGCCTGTA
CTGCCAGCTGCTCTCATGGACATAAGAAATGTGTTGTGTGCCACCTCCTC
ACAAGAGACCAGCCACCACCTTCAAGGAAGCGAATGGAGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7134:143..2934+

>mRNA_C-tenellus_contig7134.1.1 ID=mRNA_C-tenellus_contig7134.1.1|Name=mRNA_C-tenellus_contig7134.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=243bp|location=Sequence derived from alignment at C-tenellus_contig7134:143..2934+ (Choristocarpus tenellus KU2346)
GCCAATCAGGTGACTCGAAAGTCTACGGCTACTCTAGTGGTGGAAATCGC
CAAGGGTATTGTACAATGGGGAGGTTGGGGGTGGGACGAGAGGAGAAAGG
GCGGCTCAGCAGCACTTGGACTAGACAGAGGAGCTGCTGAATTTGCCTGT
ACTGCCAGCTGCTCTCATGGACATAAGAAATGTGTTGTGTGCCACCTCCT
CACAAGAGACCAGCCACCACCTTCAAGGAAGCGAATGGAGTAA
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