mRNA_C-tenellus_contig7131.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7131.2.1
Unique NamemRNA_C-tenellus_contig7131.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: D7FXY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY6_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 6.060e-24
Identity = 59/109 (54.13%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    7 WAWVVDACAKTIIPVAPKLRQEYRTMK----GSTSFNSPSSSN--------QSTCFTIVGMDLMIDDELNPWIIEINHLPSFR-QTEMDYRMKKALVTDSLRLLDVQVG 294
            WA + DAC KT + V P LR+EY        G  S                +STCFTIVG+DLM+DDEL+PWIIEINHLPSFR +T MDYR+KK LV ++L LLDV+VG
Sbjct:  850 WARLADACVKTFLTVGPMLRREYNAANPPPGGFASXXXXXXXXXXXXXXXXRSTCFTIVGVDLMVDDELDPWIIEINHLPSFRTETGMDYRIKKQLVFNTLSLLDVRVG 958          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: A0A6H5JML2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.040e-15
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    7 WAWVVDACAKTIIPVAPKLRQEYRTM-------------KGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSFR 219
            WA + DAC KT + V P LR+EY                KG  +  +P    +S CFTIVG+DLM+DDEL+PWIIEINHLPSFR
Sbjct:  856 WARLADACVKTFLTVGPMLRREYNAANPTPRGFASVAASKGKAATPTPPPP-RSNCFTIVGVDLMVDDELDPWIIEINHLPSFR 938          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: D0MZB5_PHYIT (Tubulin polyglutamylase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZB5_PHYIT)

HSP 1 Score: 79.3 bits (194), Expect = 3.530e-15
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    4 VWAWVVDACAKTIIPVAPKLRQEYRTM-----------KGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSFR-QTEMDYRMKKALVTDSLRLLDV 285
            +W  + D C KTI+ V P L QEYR+              S S N+ SS+  S  F ++GMD++ID++L PW++E+NHLPSF   +++D+ +K+ L++ +  LL+V
Sbjct:  272 IWDQISDICLKTILSVQPTLAQEYRSTFAKYMRRPNSASRSVSQNTGSSTPPSCSFALLGMDVLIDEQLKPWLLEVNHLPSFGCDSQLDWSVKEPLISQTFDLLNV 377          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: A0A078AGP1_STYLE (Beta-tubulin polyglutamylase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AGP1_STYLE)

HSP 1 Score: 79.0 bits (193), Expect = 4.870e-15
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    7 WAWVVDACAKTIIPVAPKLRQEYRTMKGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSFR-QTEMDYRMKKALVTDSLRLLDVQV 291
            W+ + D   KTII   PKL+  ++T K       P  S  S CF I+G+D+ ID++L PW+IE+N  PSF   T +DY +KK L+ D++++L++ +
Sbjct:  222 WSGIKDIILKTIISGLPKLQHVFKTSK-------PDDSENSQCFQILGIDIFIDEDLKPWLIEVNQAPSFTTDTPLDYNIKKNLLKDTIKMLNLSL 310          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: W5NDA3_LEPOC (Tubulin tyrosine ligase-like family, member 6 n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5NDA3_LEPOC)

HSP 1 Score: 75.9 bits (185), Expect = 5.810e-14
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    7 WAWVVDACAKTIIPVAPKLRQEYRTMKGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSFR-QTEMDYRMKKALVTDSLRLLDVQVG 294
            W+ + D   KT+I   P L+  Y T         P+    S+CF I+G D+++D +L PW++E+NH PSF   +E+D ++K+AL+TD+LRLL++ V 
Sbjct:  348 WSNMEDVIIKTLISAHPILKHNYCT-------GFPNQLGPSSCFEILGFDILLDSKLKPWLLEVNHSPSFTTDSELDRQVKEALLTDTLRLLNLGVN 437          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: UPI00073FC959 (tubulin polyglutamylase ttll6-like isoform X1 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI00073FC959)

HSP 1 Score: 75.9 bits (185), Expect = 5.910e-14
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    7 WAWVVDACAKTIIPVAPKLRQEYRTMKGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSFR-QTEMDYRMKKALVTDSLRLLDVQVG 294
            W+ + D   KT+I   P L+  Y T         P+    S+CF I+G D+++D +L PW++E+NH PSF   +E+D ++K+AL+TD+LRLL++ V 
Sbjct:  348 WSNMEDVIIKTLISAHPILKHNYCT-------GFPNQLGPSSCFEILGFDILLDSKLKPWLLEVNHSPSFTTDSELDRQVKEALLTDTLRLLNLGVN 437          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: A0A6P8EXI6_CLUHA (tubulin polyglutamylase TTLL13-like isoform X1 n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8EXI6_CLUHA)

HSP 1 Score: 73.9 bits (180), Expect = 2.790e-13
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 VWAWVVDACAKTIIPVAPKLRQEYRTMKGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSFR-QTEMDYRMKKALVTDSLRLLDV 285
            VW  + D   KT+I   P LRQ YRT         PS    S+CF ++G D+++D +L PW+IE+NH PSF   + +D  +K+ L+ D+L LL++
Sbjct:  257 VWNSIEDVITKTVIVAEPVLRQNYRTAF-------PSHVGPSSCFELLGFDILLDCKLKPWLIEVNHSPSFNTDSALDTEVKETLLMDTLTLLNL 344          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: UPI00106A4911 (tubulin polyglutamylase TTLL7-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A4911)

HSP 1 Score: 73.9 bits (180), Expect = 2.810e-13
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    4 VWAWVVDACAKTIIPVAPKLRQEYRTMKGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSF-RQTEMDYRMKKALVTDSLRLLDVQ 288
            VW+ + D   KT+I   P +R  YR  +  +      SSN S CF I+G D+++D ++ PW++E+N  PSF   +++DY +K  L+ D+++LL+++
Sbjct:  362 VWSNITDIIIKTLIVSQPHVRHSYRLCRPGSD-----SSNPSVCFEILGFDVLLDQKIKPWLLEVNRSPSFGTDSKLDYDIKSGLIRDAMKLLNIR 452          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: A0A061QN84_9CHLO (Tubulin polyglutamylase ttll13 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QN84_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 3.780e-13
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    7 WAWVVDACAKTIIPVAPKLRQEYRTMKGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSFR-QTEMDYRMKKALVTDSLRL 276
            W+ V     KT+I + P L+  YR++ G         ++  +CF I+G+D+M+D +L PW+IE NH PSF   T +D  +K+AL+TD+L+L
Sbjct:   87 WSEVCALAVKTLISIQPLLKHNYRSVLGY-------ENDGFSCFEILGLDIMLDSKLRPWLIECNHSPSFGIDTPLDLNVKEALITDTLKL 170          
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Match: A0A8J8P422_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8P422_HALGN)

HSP 1 Score: 73.6 bits (179), Expect = 3.860e-13
Identity = 34/92 (36.96%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   16 VVDACAKTIIPVAPKLRQEYRTMKGSTSFNSPSSSNQSTCFTIVGMDLMIDDELNPWIIEINHLPSFRQ-TEMDYRMKKALVTDSLRLLDVQ 288
            + D   KT++ V P+L   Y   K       P+++   +CF ++G D++ID +  PW++E+NH PSF   TE+D  +K  L+TD+LRLL+++
Sbjct:  319 IQDMVIKTLLSVQPQLAHSYNACK-------PNNAGSRSCFELLGFDILIDKKFKPWLLEVNHAPSFNDDTEVDKAVKTGLLTDTLRLLNIK 403          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7131.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXY6_ECTSI6.060e-2454.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JML2_9PHAE1.040e-1551.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D0MZB5_PHYIT3.530e-1538.68Tubulin polyglutamylase, putative n=2 Tax=Phytopht... [more]
A0A078AGP1_STYLE4.870e-1539.58Beta-tubulin polyglutamylase n=1 Tax=Stylonychia l... [more]
W5NDA3_LEPOC5.810e-1439.18Tubulin tyrosine ligase-like family, member 6 n=1 ... [more]
UPI00073FC9595.910e-1439.18tubulin polyglutamylase ttll6-like isoform X1 n=2 ... [more]
A0A6P8EXI6_CLUHA2.790e-1340.00tubulin polyglutamylase TTLL13-like isoform X1 n=2... [more]
UPI00106A49112.810e-1335.42tubulin polyglutamylase TTLL7-like n=1 Tax=Dendron... [more]
A0A061QN84_9CHLO3.780e-1339.56Tubulin polyglutamylase ttll13 (Fragment) n=1 Tax=... [more]
A0A8J8P422_HALGN3.860e-1336.96Uncharacterized protein n=1 Tax=Halteria grandinel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7131contigC-tenellus_contig7131:4709..5707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXY6
PFAMsTTL
Model size294
Max annot lvl2759|Eukaryota
KEGG koko:K16582
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.94e-25
EggNOG OGsKOG2158@1|root,KOG2158@2759|Eukaryota
Descriptionpositive regulation of cilium movement
Cds size294
COG categoryKT
BRITEko00000,ko01000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.068111-CDS-C-tenellus_contig7131:4708..49301680790015.068111-CDS-C-tenellus_contig7131:4708..4930Choristocarpus tenellus KU2346CDSC-tenellus_contig7131 4709..4930 +
1680790015.0814238-CDS-C-tenellus_contig7131:5635..57071680790015.0814238-CDS-C-tenellus_contig7131:5635..5707Choristocarpus tenellus KU2346CDSC-tenellus_contig7131 5636..5707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7131.2.1prot_C-tenellus_contig7131.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7131 4709..5707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7131.2.1

>prot_C-tenellus_contig7131.2.1 ID=prot_C-tenellus_contig7131.2.1|Name=mRNA_C-tenellus_contig7131.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=98bp
LVWAWVVDACAKTIIPVAPKLRQEYRTMKGSTSFNSPSSSNQSTCFTIVG
MDLMIDDELNPWIIEINHLPSFRQTEMDYRMKKALVTDSLRLLDVQVG
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mRNA from alignment at C-tenellus_contig7131:4709..5707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7131.2.1 ID=mRNA_C-tenellus_contig7131.2.1|Name=mRNA_C-tenellus_contig7131.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=999bp|location=Sequence derived from alignment at C-tenellus_contig7131:4709..5707+ (Choristocarpus tenellus KU2346)
TTGGTCTGGGCCTGGGTAGTAGATGCCTGTGCCAAGACAATCATTCCAGT GGCACCCAAGCTAAGGCAGGAATACAGGACCATGAAAGGCTCTACCTCCT TCAACTCCCCCTCCTCTTCAAACCAGTCCACCTGCTTCACAATTGTGGGT ATGGATCTCATGATTGATGACGAACTCAATCCCTGGATCATAGAGATTAA CCACCTTCCGTCTTTCAGGCAAGTACGCTAATAATCCGTTTCATCTCCCT ACCGCCCCTTGAAATTTATTTTGTGGTGTGTGTTGCAATAGTCTAAAAAG CATGCACACATAGCCAAATACCTTCAATTGCGATATCGCTATACGGCAGA CGTGCGAAAGCTGTAAAGCATGTGTCACTTTCAAGAAGAACCCAGTTCTA CTCCTCCAGGCAGGCTTTTTCACGACTTTGTTTTTTGTCCTTAACAATGT TGTCTTAATCGCACAAAAAAGCGGCCACTTACTGAACAACTGGAACATCC AACCTCTAAGAGTATATTCAAAGATCATGTGCTAGTTTAAGCTCAGAGAA AGTTTATCATACTCTAGCGCTAGGTGAAATCTATGGATAGAAGTTCCTCA AGGTGTCTGTATTATGGGCACAATCTGAGCATGACGTTCCAAATTGATAG CCAGCTCGGTAAAGTCACAAACACCACAAAAGCTTGTCCGCATGTGATAA AAAATCCCATGTCCTGCACAATAGAGTTGTGCCTTCTTAGGGGATGTCTC ATCGAGTATCAATAGCAAGACTTCCTCCTCATCTAAAAACCTGGCTATAT ACCCTATGGGTGAACCATGAAATAATAAATCTACATGGGATGCGTGCTTC TGCACTTCACCTCAGTTAGAGGTGATCCTTACCATGTGCATGTTCACTTA CCTCAACGTGCACTCAACAGGACAGAGACTGAAATGGACTACCGGATGAA GAAGGCCCTTGTGACAGATTCGTTGAGGCTTCTAGATGTGCAGGTAGGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7131:4709..5707+

>mRNA_C-tenellus_contig7131.2.1 ID=mRNA_C-tenellus_contig7131.2.1|Name=mRNA_C-tenellus_contig7131.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=294bp|location=Sequence derived from alignment at C-tenellus_contig7131:4709..5707+ (Choristocarpus tenellus KU2346)
TTGGTCTGGGCCTGGGTAGTAGATGCCTGTGCCAAGACAATCATTCCAGT
GGCACCCAAGCTAAGGCAGGAATACAGGACCATGAAAGGCTCTACCTCCT
TCAACTCCCCCTCCTCTTCAAACCAGTCCACCTGCTTCACAATTGTGGGT
ATGGATCTCATGATTGATGACGAACTCAATCCCTGGATCATAGAGATTAA
CCACCTTCCGTCTTTCAGGCAAACTGAAATGGACTACCGGATGAAGAAGG
CCCTTGTGACAGATTCGTTGAGGCTTCTAGATGTGCAGGTAGGA
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