mRNA_C-tenellus_contig7123.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: D7G4F2_ECTSI (5'-3' exoribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F2_ECTSI) HSP 1 Score: 263 bits (671), Expect = 1.440e-81 Identity = 132/146 (90.41%), Postives = 136/146 (93.15%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKNMGHKV 438 MGVPAFYRWLSEKYPKIVVD+LED R GTEIPLDL NPNG+EFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDY+DRLFSAVRPRRLLY+AIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMK MG KV Sbjct: 1 MGVPAFYRWLSEKYPKIVVDMLEDHAARVEGTEIPLDLTAENPNGIEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYIDRLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKEMGVKV 146
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE) HSP 1 Score: 263 bits (673), Expect = 5.780e-79 Identity = 132/146 (90.41%), Postives = 136/146 (93.15%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKNMGHKV 438 MGVPAFYRWLSEKYPKIVVD+LED R GTEIPLDL NPNG+EFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDY+DRLFSAVRPRRLLY+AIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMK MG KV Sbjct: 1 MGVPAFYRWLSEKYPKIVVDMLEDHAARVDGTEIPLDLTAENPNGIEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYIDRLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKEMGMKV 146
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: A0A7S1UB78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB78_9STRA) HSP 1 Score: 212 bits (540), Expect = 3.510e-64 Identity = 103/146 (70.55%), Postives = 122/146 (83.56%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKNMGHKV 438 MGVPAFYRWLSE+YPKI+VD++E KPV ++PLD PNPN +EFDNLY+DMNGIIHPCSHPED+PPP +EEEM++N+ YVDRLF+AVRPR+LL++AIDGVAPRAKMNQQRSRRF+S +E E E MEE RQ M MG KV Sbjct: 17 MGVPAFYRWLSERYPKIIVDMIEAKPV---DPDVPLDTTTPNPNSIEFDNLYVDMNGIIHPCSHPEDRPPPRNEEEMFRNVCYYVDRLFAAVRPRKLLFLAIDGVAPRAKMNQQRSRRFKSVKEMREGQEAMEEVRQDMMAMGLKV 159
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: A0A7C8Z1Q6_OPUST (XRN_N domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8Z1Q6_OPUST) HSP 1 Score: 202 bits (515), Expect = 2.610e-63 Identity = 96/146 (65.75%), Postives = 120/146 (82.19%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKNMGHKV 438 MGVPAFYRWL+EKYP IVVDV+E++PV G EIP+D +PNPN +E+DNLY+DMNGIIHPC HPED+P P + +E+++N+ DY+DRLF+ VRPR+LLYMAIDGVAPRAKMNQQRSRRFR+A++A EAA E R + G K+ Sbjct: 1 MGVPAFYRWLAEKYPLIVVDVVEEEPVVVDGVEIPVDTSKPNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTTFDEVFQNVFDYIDRLFNMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAAEAAAEEERLRHEFEQEGRKL 146
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: E1ZGU2_CHLVA (XRN_N domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGU2_CHLVA) HSP 1 Score: 201 bits (512), Expect = 8.930e-62 Identity = 95/146 (65.07%), Postives = 118/146 (80.82%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKNMGHKV 438 MGVP++YRWLS++YPK+V DV+ED+ G E+P+D QPNPNG+EFDNLY+DMNGIIHPC HPED+P P +E+E++ + DY+DRLF+ VRPR+LLYMAIDGVAPRAKMNQQRSRRFR+AQEAEE + E+ R G KV Sbjct: 1 MGVPSYYRWLSQRYPKVVKDVVEDEVQVINGVEVPVDTSQPNPNGLEFDNLYLDMNGIIHPCFHPEDRPAPTTEQEVFTTMFDYIDRLFAIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAQEAEEREKEEEKLRDEFAKQGIKV 146
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: A0A1S0UKX8_LOALO (XRN_N domain-containing protein n=1 Tax=Loa loa TaxID=7209 RepID=A0A1S0UKX8_LOALO) HSP 1 Score: 195 bits (495), Expect = 2.040e-61 Identity = 91/144 (63.19%), Postives = 117/144 (81.25%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKNMGH 432 MGVPAF+RWL+ KYP ++VD +E+KP G IP++ PNPN EFDNLY+DMNGIIHPC+HPED+P P++EEEM+ I +Y+DRLF+ VRPR+LLYMAIDGVAPRAKMNQQRSRRFR+++EA E E + ETR +++ G+ Sbjct: 1 MGVPAFFRWLTRKYPSVIVDAVEEKPRDMNGVRIPVNTVDPNPNFQEFDNLYLDMNGIIHPCTHPEDRPSPKTEEEMFTLIFEYIDRLFAIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKEAIEKVEQIAETRSRLESEGY 144
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: A0A0D2JDS0_9CHLO (5'-3' exoribonuclease 2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JDS0_9CHLO) HSP 1 Score: 202 bits (513), Expect = 2.100e-61 Identity = 97/143 (67.83%), Postives = 113/143 (79.02%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKNMG 429 MGVPAFYRWLSEKYPKI+VDV E+ P G E+P+D PNPNG+EFDNLY+DMNGIIHPC HPED+P P +E E++ NI DY+DRLF+ VRPR++LYMAIDGVAPRAKMNQQRSRRFR+AQE EE E R+ G Sbjct: 1 MGVPAFYRWLSEKYPKIIVDVKEELPEWINGVEVPVDTSTPNPNGIEFDNLYLDMNGIIHPCFHPEDRPAPTTEREVFLNIFDYIDRLFAMVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAQEMEEKEAEEERLREEFARQG 143
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: A0A2K3K4C9_TRIPR (5'-3' exoribonuclease 3-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K4C9_TRIPR) HSP 1 Score: 193 bits (491), Expect = 3.570e-61 Identity = 88/128 (68.75%), Postives = 112/128 (87.50%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEA 384 MGVPAFYRWL+EKYP ++VD +E++PV G EIP+DL +PNPN +E+DNLY+DMNGIIHPC HPED+P P S EE+++ + DY+DRLF+ VRPR+LL+MAIDGVAPRAKMNQQRSRRFR+A++A +A Sbjct: 1 MGVPAFYRWLAEKYPMVIVDAVEEEPVVIEGVEIPIDLSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTSFEEVFECMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFRAAKDAADA 128
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: A0A1D6MQ08_MAIZE (5'-3' exoribonuclease 3 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6MQ08_MAIZE) HSP 1 Score: 192 bits (489), Expect = 9.330e-61 Identity = 88/132 (66.67%), Postives = 112/132 (84.85%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELM 396 MGVPAFYRWL+EKYP +VVDV+E++PV G ++P+D +PNPN +EFDNLY+DMNGIIHPC HPED+P P + E+++ + DY+DRLF VRPRRLLYMAIDGVAPRAKMNQQRSRRFR+A++A +A ++ Sbjct: 1 MGVPAFYRWLAEKYPMVVVDVVEEEPVEIEGVKVPVDTSKPNPNSLEFDNLYLDMNGIIHPCFHPEDRPSPTTFGEVFQCMFDYIDRLFVMVRPRRLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAVSIL 132
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Match: A0A482S7U6_9ARCH (XRN_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7U6_9ARCH) HSP 1 Score: 197 bits (500), Expect = 1.290e-60 Identity = 94/143 (65.73%), Postives = 119/143 (83.22%), Query Frame = 1 Query: 1 MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYVDRLFSAVRPRRLLYMAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKNMG 429 MGVPAF+RW++EKY KI+ +VLE +PV GT PL+L +PNP G+EFDNLY+DMNG+IHPCSHPED+ P++EEEMY N+ YVDRL +A+RPRRLLY+AIDGVAPRAKMNQQRSRRFR+AQE E E+ E+ + M+++G Sbjct: 56 MGVPAFFRWITEKYGKILQEVLEKRPVIIDGTVFPLNLTEPNPIGIEFDNLYVDMNGLIHPCSHPEDREAPKTEEEMYDNVCLYVDRLVAAIRPRRLLYLAIDGVAPRAKMNQQRSRRFRAAQEMREKREIKEQVLREMQDLG 198 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7123.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7123.1.1 >prot_C-tenellus_contig7123.1.1 ID=prot_C-tenellus_contig7123.1.1|Name=mRNA_C-tenellus_contig7123.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp MGVPAFYRWLSEKYPKIVVDVLEDKPVRAGGTEIPLDLEQPNPNGMEFDNback to top mRNA from alignment at C-tenellus_contig7123:73..2376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7123.1.1 ID=mRNA_C-tenellus_contig7123.1.1|Name=mRNA_C-tenellus_contig7123.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2304bp|location=Sequence derived from alignment at C-tenellus_contig7123:73..2376- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7123:73..2376- >mRNA_C-tenellus_contig7123.1.1 ID=mRNA_C-tenellus_contig7123.1.1|Name=mRNA_C-tenellus_contig7123.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=441bp|location=Sequence derived from alignment at C-tenellus_contig7123:73..2376- (Choristocarpus tenellus KU2346)back to top |