mRNA_C-tenellus_contig7119.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7119.2.1
Unique NamemRNA_C-tenellus_contig7119.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7119.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7119contigC-tenellus_contig7119:756..1615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size860
Hectar predicted targeting categoryother localisation
Exons1
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790013.806562-UTR-C-tenellus_contig7119:755..9531680790013.806562-UTR-C-tenellus_contig7119:755..953Choristocarpus tenellus KU2346UTRC-tenellus_contig7119 756..953 +
1680790013.8276181-UTR-C-tenellus_contig7119:1487..16151680790013.8276181-UTR-C-tenellus_contig7119:1487..1615Choristocarpus tenellus KU2346UTRC-tenellus_contig7119 1488..1615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790013.8179584-CDS-C-tenellus_contig7119:953..14871680790013.8179584-CDS-C-tenellus_contig7119:953..1487Choristocarpus tenellus KU2346CDSC-tenellus_contig7119 954..1487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7119.2.1prot_C-tenellus_contig7119.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7119 954..1487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7119.2.1

>prot_C-tenellus_contig7119.2.1 ID=prot_C-tenellus_contig7119.2.1|Name=mRNA_C-tenellus_contig7119.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=178bp
MGESERDYDMNVDGEGEEDASTTGSEAHTTGNAGGNIGRGAQDTKRSAPH
QSQQISPRMRQRQRIDKAAHIAAKHLAPHSEQRASSRLEQCQRVDFTPQL
YDLEGSEEMDMNHFVSTLIQQNNNDVYMPYGSHGGGGGNRCRRAIYNKGS
LEWVGCRAVAGGYGEGNDRAMAEGDVW*
back to top

mRNA from alignment at C-tenellus_contig7119:756..1615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7119.2.1 ID=mRNA_C-tenellus_contig7119.2.1|Name=mRNA_C-tenellus_contig7119.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=860bp|location=Sequence derived from alignment at C-tenellus_contig7119:756..1615+ (Choristocarpus tenellus KU2346)
GACCAAGCAACAGCGCGGCGCCAACGCCAAGTTCCACCCGTACGCGAAGC
GGGGGATCCTCGTCGGGCACGACAGGGCGTCACTGTGCTGGCACGTGTGG
ATATCCCGCAGGAAGGTAAGCTGGTGACCTCCGTATAAGTGAAGTTCCAA
CCTGAAGCCAAACTGCTGGAACTGGTGGGGGAGTCAGAGCTTGACATAAT
GGGGGAGTCGGAGCGTGACTACGATATGAACGTCGATGGCGAAGGCGAAG
AGGATGCTTCCACAACAGGGAGCGAGGCACACACGACTGGGAATGCGGGC
GGAAACATTGGGCGTGGGGCTCAAGATACAAAGCGCTCAGCACCCCATCA
AAGTCAACAGATTTCTCCCAGGATGAGACAACGCCAGCGCATTGATAAGG
CAGCGCATATAGCGGCCAAGCACCTGGCCCCACACTCTGAACAGCGGGCA
TCTTCCCGGCTGGAGCAGTGCCAACGGGTGGACTTCACACCCCAGCTGTA
CGACCTGGAAGGGAGTGAGGAAATGGATATGAACCACTTCGTGTCAACCC
TCATACAGCAGAACAACAACGACGTGTACATGCCTTATGGGTCTCATGGG
GGAGGAGGTGGCAACAGGTGCAGACGAGCCATCTACAATAAAGGAAGCCT
TGAGTGGGTCGGATGCAGAGCAGTGGCAGGAGGCTATGGAGAAGGAAATG
ACAGGGCTATGGCAGAAGGGGATGTTTGGTGACAAGGCCCTGCCCCAAGC
GAGGAAGGCGATCAAGACACTATTCGTTTTCAACGCTGTAAGGCGCGAAT
CGTGGCCCACGGCTTCGCACAAAACGCAGGTATGAATTTCTTCGAAACCT
TCAGGCCGGT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7119:756..1615+

>mRNA_C-tenellus_contig7119.2.1 ID=mRNA_C-tenellus_contig7119.2.1|Name=mRNA_C-tenellus_contig7119.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=534bp|location=Sequence derived from alignment at C-tenellus_contig7119:756..1615+ (Choristocarpus tenellus KU2346)
ATGGGGGAGTCGGAGCGTGACTACGATATGAACGTCGATGGCGAAGGCGA
AGAGGATGCTTCCACAACAGGGAGCGAGGCACACACGACTGGGAATGCGG
GCGGAAACATTGGGCGTGGGGCTCAAGATACAAAGCGCTCAGCACCCCAT
CAAAGTCAACAGATTTCTCCCAGGATGAGACAACGCCAGCGCATTGATAA
GGCAGCGCATATAGCGGCCAAGCACCTGGCCCCACACTCTGAACAGCGGG
CATCTTCCCGGCTGGAGCAGTGCCAACGGGTGGACTTCACACCCCAGCTG
TACGACCTGGAAGGGAGTGAGGAAATGGATATGAACCACTTCGTGTCAAC
CCTCATACAGCAGAACAACAACGACGTGTACATGCCTTATGGGTCTCATG
GGGGAGGAGGTGGCAACAGGTGCAGACGAGCCATCTACAATAAAGGAAGC
CTTGAGTGGGTCGGATGCAGAGCAGTGGCAGGAGGCTATGGAGAAGGAAA
TGACAGGGCTATGGCAGAAGGGGATGTTTGGTGA
back to top