mRNA_C-tenellus_contig7092.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7092.1.1
Unique NamemRNA_C-tenellus_contig7092.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7092.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7092contigC-tenellus_contig7092:3682..6747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1265
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790012.0494332-UTR-C-tenellus_contig7092:3681..45511680790012.0494332-UTR-C-tenellus_contig7092:3681..4551Choristocarpus tenellus KU2346UTRC-tenellus_contig7092 3682..4551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790012.0610437-CDS-C-tenellus_contig7092:4551..45991680790012.0610437-CDS-C-tenellus_contig7092:4551..4599Choristocarpus tenellus KU2346CDSC-tenellus_contig7092 4552..4599 -
1680790012.0724096-CDS-C-tenellus_contig7092:6402..67471680790012.0724096-CDS-C-tenellus_contig7092:6402..6747Choristocarpus tenellus KU2346CDSC-tenellus_contig7092 6403..6747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7092.1.1prot_C-tenellus_contig7092.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7092 4552..6747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7092.1.1

>prot_C-tenellus_contig7092.1.1 ID=prot_C-tenellus_contig7092.1.1|Name=mRNA_C-tenellus_contig7092.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=131bp
TGTGIALGDISLGCTPVILSGDSRAVGPGWHGSLGGGCQGRWRRARESVG
WGIRSVLDSGSTACSGVPLCRAGSSGNESGKRSMEEEEKKERESKLIRME
LEIEKLQDENERWQKVNNSLWQKLGKGSRT*
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mRNA from alignment at C-tenellus_contig7092:3682..6747-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7092.1.1 ID=mRNA_C-tenellus_contig7092.1.1|Name=mRNA_C-tenellus_contig7092.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3066bp|location=Sequence derived from alignment at C-tenellus_contig7092:3682..6747- (Choristocarpus tenellus KU2346)
ACTGGAACCGGAATTGCCCTGGGTGACATCTCTCTAGGTTGCACCCCTGT
CATCCTCTCAGGGGACTCACGAGCAGTGGGTCCTGGGTGGCATGGATCAC
TGGGCGGGGGGTGTCAGGGTAGGTGGAGGAGGGCTAGGGAGAGTGTGGGG
TGGGGGATACGTTCAGTGCTGGACTCGGGTTCTACTGCATGTTCTGGGGT
TCCTTTGTGTCGGGCTGGCTCTAGTGGCAATGAGTCAGGGAAGAGAAGTA
TGGAGGAGGAGGAGAAGAAGGAGAGAGAGAGCAAGTTGATTCGAATGGAA
TTAGAGATAGAGAAGCTTCAGGATGAGAATGAGAGGTGGCAGAAGGTGAG
AGGAGGGGCTGCGGGTCTGATTAGTATATTACGCCCGAAATGAGAATAAA
AGAATATATATTGTAAAAGTGAAGTGTGGGGAGGGGAAGGGGGGGGCCAA
GGAAGTGTGGTGTGAAGAGTAGAGCTTTTACACAAATAGAATTAATTAGC
CCATGTTTTTCGTTGAGCCAATCGGATCAATTCACCCTAACGGCAATGTC
CACCATCCTTCAATCTTTTTTGCGTGCCTCCAGGGAATTGAGGACTTGCG
TGATACTAGCACTGTGGTTGTTTTTGTTTTGTTTTGTGATGAAGCTACAT
TTTGGTTGAGGGGTAAGAGAGATGTGGGAGATAGCTGATGCTTCTTTAAC
TAGATCTCTGTAATAATAAACCTGTCCTTAATCGAAGTGATCTGAATCTT
TGTGGCTTTCTGGACGGTGATGTTTTGCATAACTGTTTGTGTTCCACGAT
TCCTAAAGTTGAGTTGAATGGAAAACTAATTATTTTTTCTTCTTGGGCTC
AGTGTGACTTGAAAGATAGTCTATTGGTGGAAGTGTAAGAAGAATTTCAA
CAGCCAGAAATCGGGTAACCTTGAAAGTTGAGGAAGGCATGTATGGAAGG
TGCAAGACAGGTGCTGCGTTTCTATTAGGATCACAGATGAGAGATATAAA
CTTGAGATTGCTTCAGTCCTTAGGTAGTGTACCTGAGTCAAATCTTGATG
GAGAGATTGGAGGACCCTTTGTGGTTTTTGGAAGCAATGCACATGGAGTA
TGGGATTCAAGCAAAGTTGAAGTCGGATGATGAGCAGTGTGGTTTAAAAA
CCTGGGTGTCAACAGTGACCCGCATCATTTGTTCAATGGAATCGAATTAC
TCTTCATTCTGTAGCCCCTAACTGTAGAGGCTTGTACCACTCTTGTGCTG
GTAGTACATCTATGAGTGAAAGTGTCTTAGAGGGTACGAGTTTTGCCCTG
TTTGTCCGTTTGGGGCTTGGCTTCCCATGGCTTTTAAAAAAATGACATTT
TTCCTAGTCCAAAATATTTTGGATTAGGTAAAATGTGTACATTATGAAAA
GGTGTGTCCAGATCAAGGATCTTGACACCTCCTAACAAACACGATGGCCA
AAATTACATGAAAATTGCAACATTGGATTTTGGCCCCCAAATGGACGCGT
CTCTCTACCCTCTACAATATTTTGACTCCTATATACTATTAATATGAAAT
ATCACTACCAATATTAGCTTCGGAGAGGAATGAGATGGTGCTGCACAAGA
TGCAACATAGACTCCAGTAAAGTAAATAAGGCTATAGGAAAAAATGGGAT
TTTTTGCCGCCTTAGGACCATGCAGCACTTGTCCATCCTGCCTGCAACCT
CCTCTACCTTGTTGAGAGCGAAACAAAATCCAAGAGGATAGTTTGGTATA
TATCGTATTTGTCCCATGTATGGTGTATTCCTCCTCCATTCTCCCCATCA
TATAGTTACAACTCTTTTGAAGATCACTACTGTGTGTGGATCCTTTGTAA
TCTCAAATGGTGCCCTTTCATGCAGTGTTTTTTTTTAATTTTGGACAGGT
ACATGTACCTTCTTGTTTTGCCGATTTTTTTCCTCCTTGCCATCATACTT
TTTATATATGCCAATTACTGCATGGATTATTATATGTGTACTGGTTATTT
ATTTTATTTGAGGTTGATGAGTATATATTTTGGGGTTTTCGTCTGCCTCT
GGAAGCAAGATAATAATTGTCCCGTACAAAGTTAATTCAAAAGGACCTTC
AAAGTGGTGTGCTGATCCCCCTCCAAACTTTCTCTCCATGTCCTCAAGGT
GAACAACTCTCTTTGGCAGAAGCTGGGTAAAGGGAGCAGGACATGATGCA
TGCATACTACAAATAGGGTTTAGAAGTGAATATTTCCAGGCGTATTTTTG
AGATTCGTTCTTTTCTTCTATTCCCAGCACTTTTGACCATGCACTAGTCC
AGGTGGAGTGCGGTGTAGTGTGCTCTTAAGAGTAGGATAGGCTGTTGTAT
CTGGTACTTGTAGGTTCTCAGTTAGAAGGAACGACATACATCACCAACCA
TAGTTTGTGGACGTTATAAACAGATGGTAAAATGTACACCCTGAAGGTTT
GATAGGAACAAGTCGTGTGGCAATTATGGGGACATCATCCAGAGAATGTG
ATTGGCATACTTTTCAAGGCAAATTTTCTCTCTGCCATTTAAGCAATCTA
TGTTGGAGTGGGTATTCTTCTTACTGTGGTCAGGAACATCAGCAGTGCCA
AAACGAAGAGTGAGCAGGTAAATTTGCACCTAATTTTTTTTTCTTCTATT
TGATATGTGGTTGTGTGCCCCTCTGTGCAGACCACTGTGTGCTGCATGAT
GAAGGCGTACTACAAGGCGATTGTTTCATGTTGAATACGTGCTGTTGGTT
CATTGTGACATGCAGGCTGTATCTCTACTGCTCTTTCTTGTGTCAATCGA
ATAAATGTTTCTCAACATATGTTCCCTACAGGCTCTGCGTGCCCCAATCA
ATCTTGTAGATTAACATACTGAGGTGTTTTTAGCCTTTGATATCCTTGAA
TTCACTCAGAAGAGGGGTGAGGAATACGGAGCATGTGTGTGAAGCAGGCG
GGCTGAAATACGTAGAGGGGGGATCCATTCACTGTCATCCAATAAGTACA
ATATACGAAATAAAAACTGCTCACTGTAGTGCTAACAAGCTGTTGTGTGT
AGCTAACCTGACTGTA
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Coding sequence (CDS) from alignment at C-tenellus_contig7092:3682..6747-

>mRNA_C-tenellus_contig7092.1.1 ID=mRNA_C-tenellus_contig7092.1.1|Name=mRNA_C-tenellus_contig7092.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=393bp|location=Sequence derived from alignment at C-tenellus_contig7092:3682..6747- (Choristocarpus tenellus KU2346)
ACTGGAACCGGAATTGCCCTGGGTGACATCTCTCTAGGTTGCACCCCTGT
CATCCTCTCAGGGGACTCACGAGCAGTGGGTCCTGGGTGGCATGGATCAC
TGGGCGGGGGGTGTCAGGGTAGGTGGAGGAGGGCTAGGGAGAGTGTGGGG
TGGGGGATACGTTCAGTGCTGGACTCGGGTTCTACTGCATGTTCTGGGGT
TCCTTTGTGTCGGGCTGGCTCTAGTGGCAATGAGTCAGGGAAGAGAAGTA
TGGAGGAGGAGGAGAAGAAGGAGAGAGAGAGCAAGTTGATTCGAATGGAA
TTAGAGATAGAGAAGCTTCAGGATGAGAATGAGAGGTGGCAGAAGGTGAA
CAACTCTCTTTGGCAGAAGCTGGGTAAAGGGAGCAGGACATGA
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