mRNA_C-tenellus_contig7011.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7011.1.1
Unique NamemRNA_C-tenellus_contig7011.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7011.1.1 vs. uniprot
Match: A0A6H5J901_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J901_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 5.810e-42
Identity = 68/122 (55.74%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:    1 VQMIRPRKFRFKPTRKVTAWPLRLMPHATSATEGILSCRCVVTAVAMKGSWLKIQLSGGKEGWVQRKLVDGTVILSECNQYRRYEEWGGYNRFFCGGRVMLGSDANWFMGSNLILTIPFAVF 366
            +Q+I PRK+RF PT +V   PLRLMP   S  +G +   CVVTAVA KG+WL++++ G KEGW+Q +  DGTV L+E + YRR+EEWGG+N FF GGRVM+GSD  WF+ SN+ LT+P  +F
Sbjct:   48 IQIIEPRKYRFTPTARVPTCPLRLMPLDGSRVQGTVGRSCVVTAVAQKGTWLQVRVGGAKEGWMQSQFSDGTVTLAEVDSYRRHEEWGGFNHFFLGGRVMMGSDVKWFLSSNITLTVPAMLF 169
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BLAST of mRNA_C-tenellus_contig7011.1.1 vs. uniprot
Match: D7FV32_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV32_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 3.500e-32
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   73 MPHATSATEGILSCRCVVTAVAMKGSWLKIQLSGGKEGWVQRKLVDGTVILSECNQYRRYEEWGGYNRFFCGGRVMLGSDANWFMGSNLILTIPFAVF 366
            MP   S  +G +   CVVTAVA KG+WL++++ G KEGW+Q +  DGTV L+E + YRR+EEWGG+N FF GGRVM+GSD  WF+ SN+ LT+P  +F
Sbjct:    1 MPLDGSRVQGTVGRSCVVTAVAQKGTWLQVRVGGAKEGWMQSQFSDGTVTLAEVDSYRRHEEWGGFNHFFLGGRVMMGSDVRWFLSSNITLTVPSMLF 98
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BLAST of mRNA_C-tenellus_contig7011.1.1 vs. uniprot
Match: A0A7S3UWI4_HETAK (Palmitoyltransferase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWI4_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 7.910e-17
Identity = 38/117 (32.48%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:   19 RKFRFKPTRKVTAW-PLRLMPHATSATEGILSCRCVVTAVAMKGSWLKIQLSGGKEGWVQRKLVDGTVILSECNQYRRYEEWGGYNRFFCGGRVMLGSDANWFMGSNLILTIPFAVF 366
            R+F+F P R    +  +   P  T+    ++S   +V+ + ++  WL++ ++G +EGW + +   G +  +E   YRR+EEWGG N+FFC G++M G+D  +F+  N ++T P  +F
Sbjct:  125 RRFQFAPPRGAQRFCTIHTGPGETTPITSVISAPALVSGLDVQRGWLRVFVNG-REGWARLRNAKGFMCFAERKDYRRFEEWGGNNKFFCQGKLMFGADFPFFLVCNCVITCPVVLF 240
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BLAST of mRNA_C-tenellus_contig7011.1.1 vs. uniprot
Match: A0A7R9YFF9_9STRA (Palmitoyltransferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFF9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.750e-10
Identity = 28/82 (34.15%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  121 VVTAVAMKGSWLKIQLSGGKEGWVQRKLVDGTVILSECNQYRRYEEWGGYNRFFCGGRVMLGSDANWFMGSNLILTIPFAVF 366
            V++ +  +G WL ++  G +EGW +R    G  +L   N + RYEEW G NRF+C GR++LG+     + +  ++ +P  +F
Sbjct:  102 VISLIETQGDWLLVRC-GAREGWTKRYDPSGADVLLPTNNWYRYEEWNGNNRFWCRGRLILGAHWRTTLCTTSLVWVPTLIF 182
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J901_9PHAE5.810e-4255.74Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FV32_ECTSI3.500e-3255.10Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S3UWI4_HETAK7.910e-1732.48Palmitoyltransferase n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9YFF9_9STRA5.750e-1034.15Palmitoyltransferase (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7011contigC-tenellus_contig7011:2628..6668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FV32
PFAMsDHHC
Model size366
Max annot lvl2759|Eukaryota
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035,ko:K16675,ko:K18932,ko:K20027,ko:K20030,ko:K20471
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,ko04391,map00860,map01100,map01110,map04391
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005886,GO:0007275,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0016020,GO:0016049,GO:0021700,GO:0022622,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030154,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035618,GO:0040007,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0060560,GO:0071695,GO:0071944,GO:0080147,GO:0090558,GO:0090627,GO:0097708,GO:0099402,GO:0120025,GO:1905392
Exons3
Evalue5.3e-33
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
EC1.14.13.81,2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size360
COG categoryZ
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790007.4823956-UTR-C-tenellus_contig7011:2627..26331680790007.4823956-UTR-C-tenellus_contig7011:2627..2633Choristocarpus tenellus KU2346UTRC-tenellus_contig7011 2628..2633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790007.4952958-CDS-C-tenellus_contig7011:2633..27711680790007.4952958-CDS-C-tenellus_contig7011:2633..2771Choristocarpus tenellus KU2346CDSC-tenellus_contig7011 2634..2771 +
1680790007.510359-CDS-C-tenellus_contig7011:3511..36151680790007.510359-CDS-C-tenellus_contig7011:3511..3615Choristocarpus tenellus KU2346CDSC-tenellus_contig7011 3512..3615 +
1680790007.5237916-CDS-C-tenellus_contig7011:6550..66681680790007.5237916-CDS-C-tenellus_contig7011:6550..6668Choristocarpus tenellus KU2346CDSC-tenellus_contig7011 6551..6668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7011.1.1prot_C-tenellus_contig7011.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7011 2634..6668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7011.1.1

>prot_C-tenellus_contig7011.1.1 ID=prot_C-tenellus_contig7011.1.1|Name=mRNA_C-tenellus_contig7011.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MIRPRKFRFKPTRKVTAWPLRLMPHATSATEGILSCRCVVTAVAMKGSWL
KIQLSGGKEGWVQRKLVDGTVILSECNQYRRYEEWGGYNRFFCGGRVMLG
SDANWFMGSNLILTIPFAVF
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mRNA from alignment at C-tenellus_contig7011:2628..6668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7011.1.1 ID=mRNA_C-tenellus_contig7011.1.1|Name=mRNA_C-tenellus_contig7011.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4041bp|location=Sequence derived from alignment at C-tenellus_contig7011:2628..6668+ (Choristocarpus tenellus KU2346)
GTTCAGATGATAAGACCTCGCAAGTTTCGTTTCAAGCCTACCCGAAAAGT
AACTGCTTGGCCACTACGCCTGATGCCGCACGCCACATCTGCCACTGAAG
GGATCCTCAGCTGCCGTTGCGTGGTTACAGCAGTAGCAATGAAGGTACGC
CTGGTAGAGTTTAGGGATAAGTCTTCACTCGTAAGCGCAAACCGTAGTCA
CTAACAATTCTCAATCGATGAAACAGCGATTACTTCGTGGCTGCAATAGC
TGAGGTCTATTCGGAATCCAGGGAATGCGTTTGTCCTTCAAACACTTTGC
CTGTCAGATTAAGCAATTTCATATCATCTGTTTCAAAACAGTGCCTTCCT
CCCTCTAAACACATGCACTCTGTGTTTTTCCAAGCATACCACAGCAAAGA
CGCTCCCAGGAGAATAACTGAGAGGTATACATATTTTGGCTCCTTTGCAT
TGTATGCTTTTCTTAAATCCTGTGCAATACAACCTGTTTTCATGCTTTAT
GTACAAATCATAAGCCTCAAAAAACAAAAAAACGAAGGTATCACAGTAGA
ATAGAAAAGAGAAAAAAAATCATCACCAAAGATTTCAGGCACTCTACTTA
AAATACTCAATTAGCATCACTACTAGTGCTTTGCCCGTACTCAATCCAGA
GTCTACTTCACCTGATGAGCCAAGTCTAATCTTGACCCTGATCATGGTCC
GAGCCTCACCCCTCACCCAAATTATCCCAGCCCATATCCTACTCCAGCCC
TATCAATGTCACCCCCAAGTAACCATTAACCTAACCTCAATGCTACTCCT
AATAACTGCCGTTCAACCCTCAATCAAATCTCATTCTCCCTACCACACAA
AACACTTGTTGTGGACGACATTCTTTCACCCCAGGGTTCCTGGCTCAAAA
TACAGCTCAGTGGAGGGAAGGAAGGCTGGGTACAGAGGAAGCTTGTGGAT
GGAACCGTGATTCTTTCTGAGTGCAACCAATACCGTCGGTAAGACTGATT
TTGTGTTGTCAAATTGATGACCTGTAGAAGGGGGGCTAGATTGGAGCAAG
GGGGGAAATCTCTTTACGTTGAAAGGGCTTTGGCGAAAACAATTTTTTTC
TTTGAATTTTCTAGAGTTTATACTCGGGTTGACGCTGCTGCTGGTTTGTG
GAACCTGGGACGTGTCGGCTTCAAAGATGAGAGTGCCTTGAACAAGAGAT
CAGGTTGAACAGGAAAGCAGGTTGGCACTAACCTCAAGAGTCATAGCTGG
ATCTGCAGGAACAGGAGAGTTGAGAGTGGTTGAGAAAGGATGTACTCATG
GGCAGTACATGCACAAAAAACACTCCACTAAGGAGGGAAAGAAATCAACC
CTTTCCTTGAAGGGGTCCATGATCCTGGCCCCCCGGTGCTGAAACTCGAG
AGAGTGAGTAGACTCTCCTCAGCCCCTTACAAGCATTTGTAGACGAATAA
TACTAGTGGAATTCGTAAAGGAAGGAGCTATTCAAAACTACCAGAGAGGT
TACTGGGTGAGACAAGGGTGGTGGTCCAGAGGTCATAGTAGAGACAATGC
GAAAGAGATGAGTTCTGCCTTTTTGGTGTGGAAATTTTCAGTATCAAGAA
AGTTCTTTGCCTCCAAGCAAGAAGGGGGGAAGGTGGACAGAACGATGGGG
GACTGTGGACTGGACATAGGTTTGATTCGTCCATGTCAGGCGATATGTCA
TGATAAACAAGTGGGGGATATAGTGCCTTCCTATTAGCCTACTGTAACAA
AGACTGCCATATGTTGTTGAAGCTTGTAAGTTATGAGGCTTGTGGATCAC
TAGGTGATGTCACATGTCAAGTGTGTGCATGGCATAGACTGGAGGGGTGT
TGTGGTTAATTCACAAATCTCCACATGATGTTGGATCCGTTGATAGGATC
CTGGAGGGGTTGCGTTGATAACACTTCCCTTACAACCCCGAACAAACAAG
AAAGTGATGACGGCCATGTTCTCATCTTTGCAGGGGACTGGATTTTGTGA
GTGAAGGGAAAATCAATTGGGGACTTTGCACTGGATACTGTTGGGATGTT
GTGGAGGGCATTTTCAACCTGTATTGAGAATTTTGATGCTGTGGCACTGA
GAGAGTGTGGCGTAGCCCATTCAAGGTGTATAATATGGACCTGAGGTTTC
TGCTGGATGACAGTCTGAGTTTGCTACATATGGGGATAGTGGCGCACCAG
CGTTGCCGATATTTTTTTTTTAATGGCTGAATGCTTCTAAGGTGCAGATG
GCAACAACTAGGGTCAAGATACGCTTTTTTTATGATGTCATCGACTCCCA
ACGATCAGGACCTCTCATAAAACTTGGCAAATGTAAAGAAAAGACTAGTT
TATGGGCCTAAGATGTTAAATACATTCGTGTATGTGTAAGGTGTATAAAT
AATCGCATGATGTACTACGAATTTTGACATACTATATAGACTGAAACGCC
TCCCAAATTGTGGAGATTTTTTTTTTTTTTCCTATCTATTGAAGCCAAGT
GCATGCCTTAGTACACTAAAAACGCCTCCTCCTTGTGCGTCTGAACGTAT
TTATCTGTCAGTATTAGCAAAACTCAATATGAGTGTTGAAACAAATACAT
GTCTATGCTATTGTTATTATTATTATTATAGTATGTAAGAAGCACGATCT
CAGGCAATCAGCACCTTAGCTGTGGGACAGACTTGATCCAATTTTTTTTT
TTTTACGTCAGGACCAGGGTAATCAAAGGTGTATCTGGAGTGGGTCACAG
GTTGACCTCCAGACGCATTAATTTTGTGTGCCAGCCTGGTACCAAGATAT
TCTGACGAGGCCAGTCCATGACTGTCAACTGTATCAACGTGCCCAAGCCA
TTGACTGACTCTCAGTCATGGCCCCGGACTGAGGCCATGCTAACTGATGG
GATCGATGGACATCTGTGGTAATAACGGTGTCCTGATCCATGGCAACTCC
AAGCACCTGGGAGGCGTGACTGGCAACGGTGTGAAGTGAAGTGTGAAGAT
TTGGAGGGAGGCGCAGCACTCAGGAGGCATACAGCAGTGTCACTGACCCA
GACATGTGTGTAGGAGAAAATGAAACTTTGTTTGCTCGGGCATGATCTTA
GAGGAATTTTTGAGAGTATTGAAGAGTATTGAAGAGGTATGGTGTGCCTC
TCGAGAATCATACCATGTTGAGCCTGTTTTTCATTGTGGATGAGGACGGT
GTAGACCGCCTTCCATGAACAGTCTCAATAAACTTAGGGTTAGGGCGTGC
TCAACTTATCTTAAGCTGGTGCTCACGGACCGGGTTGAACGTGTGTTAAC
TTGGGAGGGTGAAGAAGGCAAAAACTAGAGTAATTTCTTGTATGTCCAAA
ACCTCTTGATTGTGGGAAAACAGTGAACTGTGTAATTTGGTTGCTTTGGT
CGAAAGCTGTGTCTTCTTGTGAACTCCAATGGCGTACACCCCACTCTGTA
ATGTACAAAGGTGTTCGAGGAGCATTGGTTCATTCAACACTGATCTCCCA
AGGTTGGAAATTGCAAAATCGTCGCTGTAATTTCACCTGGAGAATGTGTG
AGCTATTGAATACATCCCAGAGGTGTCCTTGAGAGGGTGAAAGGGGCATA
ATGATAAAGGGAAACGGTGCAAGAGGAAGTCTTTCACCTGATTTCAAATT
TTGAGCGATTGCTAGAATTTGGCGGAGTCGTCACAGGTGGACCTAACATA
GTCTCTCTCGGTGTCCTTGACATCTACTCAATAGGGGTTTTTCCCTGGTG
TCTTGCACCTGTTGAAGCCATGGGCTGGCTCTCAGCCATGGCCCTGAGCT
GAGGGCATGCTAGCTGATGGGATTGATGAACATCTGTGGTGATAACGGTG
TGTTAGTGTGTTGCTTAGTGCATCCTTTGTGAGTGTGTTGTTTGTCATGT
GTGCTCGCAAATGCTTTCGCCAGATACGAAGAATGGGGTGGATACAACCG
GTTCTTCTGTGGAGGGAGGGTGATGCTGGGCAGTGATGCCAACTGGTTCA
TGGGCAGCAACTTGATCCTCACCATCCCGTTTGCAGTGTTT
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Coding sequence (CDS) from alignment at C-tenellus_contig7011:2628..6668+

>mRNA_C-tenellus_contig7011.1.1 ID=mRNA_C-tenellus_contig7011.1.1|Name=mRNA_C-tenellus_contig7011.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig7011:2628..6668+ (Choristocarpus tenellus KU2346)
ATGATAAGACCTCGCAAGTTTCGTTTCAAGCCTACCCGAAAAGTAACTGC
TTGGCCACTACGCCTGATGCCGCACGCCACATCTGCCACTGAAGGGATCC
TCAGCTGCCGTTGCGTGGTTACAGCAGTAGCAATGAAGGGTTCCTGGCTC
AAAATACAGCTCAGTGGAGGGAAGGAAGGCTGGGTACAGAGGAAGCTTGT
GGATGGAACCGTGATTCTTTCTGAGTGCAACCAATACCGTCGATACGAAG
AATGGGGTGGATACAACCGGTTCTTCTGTGGAGGGAGGGTGATGCTGGGC
AGTGATGCCAACTGGTTCATGGGCAGCAACTTGATCCTCACCATCCCGTT
TGCAGTGTTT
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