mRNA_C-tenellus_contig701.3.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig701.3.2
Unique NamemRNA_C-tenellus_contig701.3.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig701.3.2 vs. uniprot
Match: D7G6D4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6D4_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 1.920e-75
Identity = 218/710 (30.70%), Postives = 329/710 (46.34%), Query Frame = 1 
Query:  172 KWCRQELPQHGSFLHWFESLHPTKMFTRFLVSCMPYIIRISPSAVRQTAYRASCQGVLRSIDRLDAKLPGGSRGWSRRWLSR-----PRKGVMPKGWGCKFLGPEDTITATAAVAAAAGMAMLKCSTLFGMPFIYFVFFVASIFCLWDLRYVIVRPNSCHLLPHIDMMSPAL-WCGWRRLPPVWGILTVEIVCGSVFIAQRLARDAGHRDARMMEARVECLEHSLEPLFRNISSCMRMVRCAQALSFGLRLSIPMPPISRMEARFE--GAGDLGSSTGPAVRELRTSLADVLQGAIEQTTYAIYVAAACRWPYG--NQYTDVWDAGDTERKCYTEPQMLAQLSKLEIQLPKILRDYVFMVAVSLDRA---PTCWEMGVRFESERDSILESLEHLGQLFRAAAERLVVVMGADYCGFPIRDITSPSNNVTAVGSTLYGLRLGIEEVLVRLFLCQSKLHMAMNISSGNAGYDWQPLLQEFTLAQSALTDARLDA-MWTNMQRTIEILAQA--NTDGLGPTGVQSSDMETPPVSGPGEHVDAGVMQTASVGPRTCGPDIYEGGKADDNLEGRINPAVDRNITDILVAVAAPDRAEQMVHESTCSTPTLNP--SDDSCAQLMGELSWVLQARPQPETCVKTLPDSVEVDPVMXXXXXXXXXXQDVIED-------GLASCPSPK-VSLGNQGKNLLVSALREQLSVAANEEIFT 2223
            +W  ++ P    F+H + ++       RFL    P+    +P A R+  Y   C+ +LRS+DR+D +LPGG  GWS RW SR      R+  + +G           I++  A    AG+A +                                         I M++ A+ WC WRR  P W +L  E+  GS  +A  LARD GH +A+++EA +  LE SL P FR + +CMRMV+C+Q LSFGLRLSIPMPP++RME R    G+G L      A+R+LR+ + DVL+G +EQ    + +   C    G         D+G  +       Q L+ L+  E +L   LR ++ +VA  ++     P  W  G+ ++S+   + E+L  L + F AA+ +L   +G     FP    TS S  +TA    +  LRL  EE++VR++ CQS     +   S +A   W+ + Q  + A+ +      D  +W   +  +E +A     T     +G   S     P   P  H++AG    +   P+  GP ++EGG  D   +   +   D  ITD+ V V +P R+     E   S PT      +DS   L+ EL  VL+ARP P TC K LP       ++           D  E+       G+A+ P+   + +G+Q    L+S LR QLS A NEE F+
Sbjct:  107 RWWHEQQPIVTRFVHDYGAV-----LVRFLT---PF----TPRAARRAGYCCGCRALLRSLDRIDLELPGGEGGWSSRWRSRRCECGDRRSALTEG-----------ISSVCAAVGGAGVAAV-----------------------------------------IIMVAAAVSWCSWRRSSPSWLLLLGEVAIGSAGVAHYLARDDGHAEAKVLEAHLVALERSLGPFFRGVHACMRMVKCSQTLSFGLRLSIPMPPVARMEGRLPATGSGGLPGRAEAALRDLRSVVMDVLEGGVEQAN-VLQLKERCGDTDGFLESGGQASDSGGRQSM-----QSLSDLAGTERRLVVDLRRFLAIVAARVEGVMVEPEMW--GLWWDSQLVDVSEALAELARYFEAASGKLETAIGCGGLPFPPSGSTSASGEMTAAAEAISSLRLHYEEIVVRIYSCQSNASSLLRDPSKSAADAWEAVRQGLSEARLSTGPLNCDQNLWQKAEDLVETMANEVDETGAALKSGKSPSSENNNP--DPSRHLEAGTGWVSLATPKEEGPRVFEGGSGDHPSKDDASSTPDTGITDVHVGVPSPVRSRCERQEGAASRPTPEEIVGEDSHELLVSELDSVLRARPLPPTCEKRLP-------LVSQQSIDSEDGSDTPEEQSKEWPLGVATPPTESALPIGSQN---LMSELRAQLSGAMNEEFFS 732
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig701.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6D4_ECTSI1.920e-7530.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig701contigC-tenellus_contig701:3826..6891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2775
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_001450.1
Cds size2262
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790007.1006694-UTR-C-tenellus_contig701:3825..42931680790007.1006694-UTR-C-tenellus_contig701:3825..4293Choristocarpus tenellus KU2346UTRC-tenellus_contig701 3826..4293 -
1680790007.1561215-UTR-C-tenellus_contig701:6846..68911680790007.1561215-UTR-C-tenellus_contig701:6846..6891Choristocarpus tenellus KU2346UTRC-tenellus_contig701 6847..6891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790007.1176941-CDS-C-tenellus_contig701:4293..48891680790007.1176941-CDS-C-tenellus_contig701:4293..4889Choristocarpus tenellus KU2346CDSC-tenellus_contig701 4294..4889 -
1680790007.1316853-CDS-C-tenellus_contig701:5043..54111680790007.1316853-CDS-C-tenellus_contig701:5043..5411Choristocarpus tenellus KU2346CDSC-tenellus_contig701 5044..5411 -
1680790007.144911-CDS-C-tenellus_contig701:5548..68461680790007.144911-CDS-C-tenellus_contig701:5548..6846Choristocarpus tenellus KU2346CDSC-tenellus_contig701 5549..6846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig701.3.2prot_C-tenellus_contig701.3.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig701 4294..6846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig701.3.2

>prot_C-tenellus_contig701.3.2 ID=prot_C-tenellus_contig701.3.2|Name=mRNA_C-tenellus_contig701.3.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=754bp
MSRPTGPLADHLSAQALLEDRDNGSEYSDDTETHCSAWEQCLKWCRQELP
QHGSFLHWFESLHPTKMFTRFLVSCMPYIIRISPSAVRQTAYRASCQGVL
RSIDRLDAKLPGGSRGWSRRWLSRPRKGVMPKGWGCKFLGPEDTITATAA
VAAAAGMAMLKCSTLFGMPFIYFVFFVASIFCLWDLRYVIVRPNSCHLLP
HIDMMSPALWCGWRRLPPVWGILTVEIVCGSVFIAQRLARDAGHRDARMM
EARVECLEHSLEPLFRNISSCMRMVRCAQALSFGLRLSIPMPPISRMEAR
FEGAGDLGSSTGPAVRELRTSLADVLQGAIEQTTYAIYVAAACRWPYGNQ
YTDVWDAGDTERKCYTEPQMLAQLSKLEIQLPKILRDYVFMVAVSLDRAP
TCWEMGVRFESERDSILESLEHLGQLFRAAAERLVVVMGADYCGFPIRDI
TSPSNNVTAVGSTLYGLRLGIEEVLVRLFLCQSKLHMAMNISSGNAGYDW
QPLLQEFTLAQSALTDARLDAMWTNMQRTIEILAQANTDGLGPTGVQSSD
METPPVSGPGEHVDAGVMQTASVGPRTCGPDIYEGGKADDNLEGRINPAV
DRNITDILVAVAAPDRAEQMVHESTCSTPTLNPSDDSCAQLMGELSWVLQ
ARPQPETCVKTLPDSVEVDPVMIEHDAMMVEHQDVIEDGLASCPSPKVSL
GNQGKNLLVSALREQLSVAANEEIFTFGADEFDGSDLHQSEDGSGGAKLP
SSP*
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mRNA from alignment at C-tenellus_contig701:3826..6891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig701.3.2 ID=mRNA_C-tenellus_contig701.3.2|Name=mRNA_C-tenellus_contig701.3.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3066bp|location=Sequence derived from alignment at C-tenellus_contig701:3826..6891- (Choristocarpus tenellus KU2346)
CAACTTGTCCTACATCTACACACATCGGTGTGTCAGTCAAATGGGATGTC
TCGTCCTACTGGACCGTTGGCGGATCACCTATCAGCTCAGGCACTGCTGG
AAGATAGAGACAATGGAAGCGAATACTCTGATGATACCGAGACTCACTGT
AGCGCTTGGGAGCAATGCCTCAAGTGGTGCCGGCAAGAATTACCTCAACA
TGGATCCTTCCTTCATTGGTTCGAGAGCCTTCATCCAACCAAGATGTTCA
CAAGGTTCCTAGTTTCGTGTATGCCTTACATCATCCGAATCTCTCCATCT
GCTGTGCGACAGACTGCATATCGTGCATCCTGTCAAGGTGTGTTGAGATC
GATCGATCGACTAGATGCTAAACTGCCAGGTGGGAGCAGGGGATGGTCAC
GGCGCTGGTTAAGCCGGCCGCGAAAGGGTGTGATGCCAAAAGGCTGGGGC
TGTAAATTTCTCGGACCTGAAGACACGATAACTGCTACGGCCGCTGTGGC
TGCTGCTGCAGGTATGGCAATGTTGAAATGTTCGACTCTGTTTGGTATGC
CGTTCATCTATTTTGTGTTTTTTGTTGCTTCAATTTTTTGCTTGTGGGAT
CTTCGATATGTTATTGTAAGACCGAATTCTTGCCATTTATTACCTCACAT
TGATATGATGTCCCCAGCTTTATGGTGTGGCTGGCGACGATTACCGCCAG
TCTGGGGTATCCTTACTGTGGAGATTGTTTGTGGATCTGTCTTCATCGCC
CAGAGGCTCGCCCGAGACGCAGGTCACAGGGACGCTCGCATGATGGAAGC
TCGTGTGGAGTGCCTAGAGCACTCTCTTGAGCCACTTTTTCGAAATATTT
CTTCCTGCATGCGCATGGTACGGTGTGCACAGGCTCTTTCCTTTGGCCTG
CGCCTCTCTATACCAATGCCTCCAATTTCCAGGATGGAAGCCCGATTTGA
AGGTGCTGGTGACCTAGGGAGCTCGACAGGGCCAGCAGTGCGCGAGCTTA
GAACTTCCCTTGCAGATGTGCTCCAAGGAGCGATCGAGCAGACGACGTAT
GCTATTTATGTGGCAGCGGCATGTAGGTGGCCATACGGAAACCAATATAC
TGACGTTTGGGATGCTGGGGATACAGAGCGCAAATGCTACACTGAGCCAC
AGATGCTCGCCCAGTTATCTAAGTTGGAGATTCAACTTCCAAAAATTCTT
CGTGATTATGTGTTCATGGTGGCAGTTAGTTTGGATAGAGCACCGACCTG
TTGGGAGATGGGTGTCCGATTTGAGAGTGAGCGAGATTCAATTTTGGAAA
GCTTGGAGCACCTCGGGCAGCTCTTTAGGGCAGCAGCAGAGAGGTGAGTA
CAATTTTATATTTTGATCGCAGAAAGCGTCTGAATGTCTTGATAAAGAAT
GGAAGTGCCCTTTTTTTATTCATAGTGTTTGATAAATCGATGAACATACA
CACTTATTGATGTCCCACTCCCCTTGGCAGGCTTGTGGTGGTTATGGGTG
CAGATTACTGCGGGTTCCCCATTCGGGATATTACCAGTCCCAGCAACAAT
GTCACTGCTGTTGGCAGTACCCTCTATGGGCTGCGACTTGGCATTGAGGA
AGTCCTAGTTCGCCTATTTCTTTGCCAAAGCAAACTCCACATGGCAATGA
ATATCTCCTCAGGCAATGCAGGGTATGACTGGCAGCCTCTCCTCCAAGAG
TTCACACTGGCTCAAAGTGCTTTGACAGATGCGAGGTTGGATGCAATGTG
GACCAATATGCAAAGGACAATAGAGATCTTAGCACAGGCAAACACCGATG
GTTTGGGACCAACTGGTGTTCAATCTTCTGACATGGAAACTCCTCCAGGT
GAGTGACCAAAGATGGTGGATAGGGTAGTGGTGCACCAAGTCGCATAAAT
CCTTCCCTTCTGTGATATTGACTCCCTTAACATACAGATTTGCAAGTAAT
GGATCAGAACTTGGACATTAAAATTACAATTGCTCAATGTTGTTTTCCAC
AGTGTCAGGTCCTGGTGAGCATGTGGACGCAGGGGTGATGCAAACTGCCT
CTGTAGGCCCAAGAACTTGTGGACCTGATATATATGAGGGAGGAAAGGCA
GATGACAATCTCGAGGGGAGAATAAATCCTGCAGTGGATAGAAATATAAC
TGACATACTGGTTGCTGTTGCAGCACCAGACAGAGCTGAACAAATGGTAC
ATGAATCTACTTGTTCTACCCCAACGTTGAACCCAAGCGATGATTCTTGT
GCTCAGCTCATGGGTGAGCTTTCCTGGGTCCTTCAAGCAAGACCCCAGCC
TGAAACTTGTGTAAAGACGCTTCCTGACTCTGTGGAAGTAGATCCAGTGA
TGATTGAACATGATGCCATGATGGTCGAACATCAGGATGTCATTGAGGAT
GGCCTTGCATCCTGCCCATCACCCAAAGTATCTCTTGGCAACCAAGGGAA
AAATCTACTTGTAAGTGCTTTACGTGAGCAACTTTCAGTTGCTGCTAATG
AGGAGATTTTTACGTTTGGTGCTGATGAGTTTGATGGCAGCGATTTGCAC
CAAAGTGAGGATGGTAGTGGAGGTGCTAAGCTTCCCTCCTCCCCCTGAAG
ACTTGTTACTACGTGATTGGCTTGATAACTAATAGCTATCATTGTAGAGC
AAATGGCGTGTGAACACCCTTGAACAAGCACTTCTTTTCTATCCTTAACA
TGTTCTGTGATGGATTTTATTACCTAATATACAGGTAACGCCTGCATTGT
ACAGTTTTTCATGTACTATTATTCACCTGCCACTTATGACCTTGAGGTTG
ACTCAAGTATTTATATAAGCAGTGTGAAACCAAGCAACATTGTCTTTTGA
TCGTGTGAGGGATGATTTACTAATGAGGAATTTACACCTCTGTTGGAAAG
GGATACACCATGTCCTTGCCCACCGGCACTGCATCCAGAGGAAAAGTTGG
GGCCTGTCCATAGTGGTTGGGGCAGCAGGAGTGTTGGGTTTAGTTGCTGT
GATAATGGTGTTGTTGACTTCACCTTGACAATGACCTTGAACTTAACCAA
ATGAATGAAACAATAC
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Coding sequence (CDS) from alignment at C-tenellus_contig701:3826..6891-

>mRNA_C-tenellus_contig701.3.2 ID=mRNA_C-tenellus_contig701.3.2|Name=mRNA_C-tenellus_contig701.3.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=2262bp|location=Sequence derived from alignment at C-tenellus_contig701:3826..6891- (Choristocarpus tenellus KU2346)
ATGTCTCGTCCTACTGGACCGTTGGCGGATCACCTATCAGCTCAGGCACT
GCTGGAAGATAGAGACAATGGAAGCGAATACTCTGATGATACCGAGACTC
ACTGTAGCGCTTGGGAGCAATGCCTCAAGTGGTGCCGGCAAGAATTACCT
CAACATGGATCCTTCCTTCATTGGTTCGAGAGCCTTCATCCAACCAAGAT
GTTCACAAGGTTCCTAGTTTCGTGTATGCCTTACATCATCCGAATCTCTC
CATCTGCTGTGCGACAGACTGCATATCGTGCATCCTGTCAAGGTGTGTTG
AGATCGATCGATCGACTAGATGCTAAACTGCCAGGTGGGAGCAGGGGATG
GTCACGGCGCTGGTTAAGCCGGCCGCGAAAGGGTGTGATGCCAAAAGGCT
GGGGCTGTAAATTTCTCGGACCTGAAGACACGATAACTGCTACGGCCGCT
GTGGCTGCTGCTGCAGGTATGGCAATGTTGAAATGTTCGACTCTGTTTGG
TATGCCGTTCATCTATTTTGTGTTTTTTGTTGCTTCAATTTTTTGCTTGT
GGGATCTTCGATATGTTATTGTAAGACCGAATTCTTGCCATTTATTACCT
CACATTGATATGATGTCCCCAGCTTTATGGTGTGGCTGGCGACGATTACC
GCCAGTCTGGGGTATCCTTACTGTGGAGATTGTTTGTGGATCTGTCTTCA
TCGCCCAGAGGCTCGCCCGAGACGCAGGTCACAGGGACGCTCGCATGATG
GAAGCTCGTGTGGAGTGCCTAGAGCACTCTCTTGAGCCACTTTTTCGAAA
TATTTCTTCCTGCATGCGCATGGTACGGTGTGCACAGGCTCTTTCCTTTG
GCCTGCGCCTCTCTATACCAATGCCTCCAATTTCCAGGATGGAAGCCCGA
TTTGAAGGTGCTGGTGACCTAGGGAGCTCGACAGGGCCAGCAGTGCGCGA
GCTTAGAACTTCCCTTGCAGATGTGCTCCAAGGAGCGATCGAGCAGACGA
CGTATGCTATTTATGTGGCAGCGGCATGTAGGTGGCCATACGGAAACCAA
TATACTGACGTTTGGGATGCTGGGGATACAGAGCGCAAATGCTACACTGA
GCCACAGATGCTCGCCCAGTTATCTAAGTTGGAGATTCAACTTCCAAAAA
TTCTTCGTGATTATGTGTTCATGGTGGCAGTTAGTTTGGATAGAGCACCG
ACCTGTTGGGAGATGGGTGTCCGATTTGAGAGTGAGCGAGATTCAATTTT
GGAAAGCTTGGAGCACCTCGGGCAGCTCTTTAGGGCAGCAGCAGAGAGGC
TTGTGGTGGTTATGGGTGCAGATTACTGCGGGTTCCCCATTCGGGATATT
ACCAGTCCCAGCAACAATGTCACTGCTGTTGGCAGTACCCTCTATGGGCT
GCGACTTGGCATTGAGGAAGTCCTAGTTCGCCTATTTCTTTGCCAAAGCA
AACTCCACATGGCAATGAATATCTCCTCAGGCAATGCAGGGTATGACTGG
CAGCCTCTCCTCCAAGAGTTCACACTGGCTCAAAGTGCTTTGACAGATGC
GAGGTTGGATGCAATGTGGACCAATATGCAAAGGACAATAGAGATCTTAG
CACAGGCAAACACCGATGGTTTGGGACCAACTGGTGTTCAATCTTCTGAC
ATGGAAACTCCTCCAGTGTCAGGTCCTGGTGAGCATGTGGACGCAGGGGT
GATGCAAACTGCCTCTGTAGGCCCAAGAACTTGTGGACCTGATATATATG
AGGGAGGAAAGGCAGATGACAATCTCGAGGGGAGAATAAATCCTGCAGTG
GATAGAAATATAACTGACATACTGGTTGCTGTTGCAGCACCAGACAGAGC
TGAACAAATGGTACATGAATCTACTTGTTCTACCCCAACGTTGAACCCAA
GCGATGATTCTTGTGCTCAGCTCATGGGTGAGCTTTCCTGGGTCCTTCAA
GCAAGACCCCAGCCTGAAACTTGTGTAAAGACGCTTCCTGACTCTGTGGA
AGTAGATCCAGTGATGATTGAACATGATGCCATGATGGTCGAACATCAGG
ATGTCATTGAGGATGGCCTTGCATCCTGCCCATCACCCAAAGTATCTCTT
GGCAACCAAGGGAAAAATCTACTTGTAAGTGCTTTACGTGAGCAACTTTC
AGTTGCTGCTAATGAGGAGATTTTTACGTTTGGTGCTGATGAGTTTGATG
GCAGCGATTTGCACCAAAGTGAGGATGGTAGTGGAGGTGCTAAGCTTCCC
TCCTCCCCCTGA
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