mRNA_C-tenellus_contig7007.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7007.1.3
Unique NamemRNA_C-tenellus_contig7007.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: A0A6H5JTR0_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTR0_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 3.080e-70
Identity = 124/213 (58.22%), Postives = 155/213 (72.77%), Query Frame = 2
Query:    2 NLKLVMDNDGAHNLGLTFGGLDLCFVEGGGKGSEAVDPDTEVNDANKALYASLAVESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEGYASPQLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAAL-PKNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFAF 637
            +L  +++ +G     L FG L L F       +E +DPD  V D NKALYA LA+ES+T GRW +QA+AL+ G+ R+VPL LL MFTENELGLLLAGPG+IDP DW+R+  F G  S  L+ WFW  V SLT EE+SLLL+FATGC+RLP GGF  L P+ F V M ++D +RPLPMAATCF+MLK+P YPD  +L ++LLVAIRHGA+GF F
Sbjct: 1594 SLMQILETEGVDQFCLQFGDLALNFCAD----TEGIDPDDAVTDENKALYAKLALESKTAGRWRKQAKALAHGMRRLVPLGLLKMFTENELGLLLAGPGDIDPGDWERNANFTGEPSAMLRRWFWNVVRSLTKEERSLLLQFATGCSRLPAGGFRGLAPRTFTVAMIDYDPERPLPMAATCFYMLKLPRYPDLYSLRKNLLVAIRHGAAGFEF 1802          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: D7FPN0_ECTSI (HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN0_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 1.230e-68
Identity = 124/216 (57.41%), Postives = 155/216 (71.76%), Query Frame = 2
Query:    2 NLKLVMDNDGAHNLGLTFGGLDL--CFVEGGGKGSEAVDPDTEVNDANKALYASLAVESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEGYASPQLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAAL-PKNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFAFS 640
            +L  +++ +G     L FG L L  C    G      +DPD  V D NKALYA LA+ES+T GRW +QA+AL+ G+ R+VPL LL MFTENELGLLLAGPG+IDP DW+R+  F G  +  L+ WFW  V SLT EE+SLLL+FATGC+RLP GGF  L P+ F V M ++D +RPLPMAATCF+MLK+P YPD  +L ++LLVAIRHGA+GF FS
Sbjct: 1481 SLMQILETEGVGQFCLQFGDLALNSCADTAG------IDPDDAVTDENKALYAKLALESKTTGRWRKQAKALAHGMRRLVPLGLLKMFTENELGLLLAGPGDIDPGDWERNAHFTGEPTAMLRRWFWNVVRSLTKEERSLLLQFATGCSRLPAGGFRGLAPRTFTVAMIDYDPERPLPMAATCFYMLKLPRYPDLYSLRKNLLVAIRHGAAGFEFS 1690          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: UPI001CF2C325 (E3 ubiquitin-protein ligase HACE1-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2C325)

HSP 1 Score: 135 bits (339), Expect = 8.680e-34
Identity = 72/183 (39.34%), Postives = 108/183 (59.02%), Query Frame = 2
Query:  110 DPDTEVNDANKALYASLAVESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEGYASPQLQ-GWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAALP-----KNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFAFS 640
            D D ++ D NK  YA L  + +       +    + G+  V+P  LL +FT +E  LL+ G  +ID  DW+ +T ++G++S   +  WFW  V+ L  EEK+LLLKF+TG   +P+GGFA+L        F V+  + ++   +PMA+TCF MLK+  Y  +  L+  LL+AIRHGA GF+FS
Sbjct:  109 DVDRKLTDNNKEEYAKLVSQLKLETLVKEEVAEFAGGLNEVIPRELLSLFTADEFSLLIGGVAKIDVSDWKSNTKYDGWSSTDDEISWFWGVVSQLKEEEKALLLKFSTGSPCVPIGGFASLTGLGGATRFTVL--KIEDVNKIPMASTCFNMLKLSRYSSEKHLKDKLLIAIRHGAEGFSFS 289          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: A0A4D9CRJ9_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRJ9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.700e-31
Identity = 90/249 (36.14%), Postives = 132/249 (53.01%), Query Frame = 2
Query:    2 NLKLVMDNDGAHNLGLTFGGLDLCFVEGG-GKGSEAVDPDT----------EVNDANKALYASLAVESRTYGRWCRQARALSSGIGRVVPL---RLLCMFTENELGLLLAGPGEIDPEDWQRHTIFE------------GYASP----------QLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAALPKNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFAFS 640
            +L  V+  + A +LGL+F      +V+ G   G+ AV  +           EV DANK  +    + +  +  +   ARAL  G+  V+     RLL ++T  EL  L  G  ++   +W+ HT               G  SP          ++  WFWAF+ +L+ E+K+LLLKFATG +RLPVGGF+AL   F +    FD  RPLP+AATCF +LK+P YP  + LE+ +L+A+R G+ GFAF+
Sbjct:  177 SLSCVLATEKAEHLGLSFTHSRPVWVQKGTDSGARAVAVEEMPLCEGGQAREVTDANKEEFVVRLLHAY-FQAYLPAARALRRGLLDVLRPSNGRLLKIYTAMELATLSGGVSDLPVSEWRTHTTVSSALLHLSSSPPSGPPSPPVGFPTRHGRKVLTWFWAFLETLSKEDKALLLKFATGLSRLPVGGFSALQPPFTLQPLAFDSARPLPIAATCFHVLKLPLYPTAEELEKHVLLALRFGSEGFAFA 424          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: UPI00077B012B (E3 ubiquitin-protein ligase HUWE1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B012B)

HSP 1 Score: 124 bits (310), Expect = 1.160e-30
Identity = 67/170 (39.41%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  149 YASLAVESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEGYASPQLQ-GWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAALP-----KNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFAFS 640
            YA L  + +       +    + G+  V+P  LL +FT +E  LL+ G  +ID  DW+ +T ++G+ S   +  WFW  V+ L  EEK+LLLKF+TG   +P+GGFA+L        F V+  + ++   +PMA+TCF MLK+  Y  +  L+  LL+AIRHGA GF+FS
Sbjct:   21 YAKLVSQLKLETLVKDEVAEFAGGLNEVIPRELLSLFTADEFSLLIGGVTKIDVSDWKSNTKYDGWFSTDNEISWFWGVVSQLKEEEKALLLKFSTGSPCVPIGGFASLTGLGGATRFTVL--KIEDVNKIPMASTCFNMLKLSRYSSEKHLKDKLLIAIRHGAEGFSFS 188          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: UPI0009E55D21 (uncharacterized protein LOC110065378 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E55D21)

HSP 1 Score: 130 bits (328), Expect = 6.130e-30
Identity = 71/183 (38.80%), Postives = 104/183 (56.83%), Query Frame = 2
Query:  110 DPDTEVNDANKALYASLAVESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEGYA-SPQLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAAL-----PKNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFAFS 640
            D D ++ D NK  Y  L  + +       +    S G+  V+P   L +FT +E  LL+ G  ++D EDW++HT+++       +  WFW  V  L  EEK+LL+KF+TG   +P+GGFAAL     P  F ++  E   +  +PMA+TCF MLK+  Y  +  L+  LL+AIRHGA GF+FS
Sbjct: 1265 DSDKKLTDDNKEEYTKLVSQFKLETSIKDEVAEFSGGLNEVIPRDFLSLFTADEFSLLINGVTKLDVEDWKKHTVYKACTVEHDVIQWFWNVVWQLKEEEKALLMKFSTGSPCVPLGGFAALTGLSGPTKFTILKTEGLNK--IPMASTCFNMLKLTSYSSEKQLKDKLLIAIRHGAEGFSFS 1445          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: A0A0K3CH81_RHOTO (E3 ubiquitin-protein ligase n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CH81_RHOTO)

HSP 1 Score: 130 bits (326), Expect = 9.330e-30
Identity = 81/211 (38.39%), Postives = 111/211 (52.61%), Query Frame = 2
Query:    2 NLKLVMDNDGAHNLGLTFGGLDLCFVEGGGKGSEAVDPDTEVNDANKALYASLAVESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEGYA-SPQLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAAL-----PKNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRH 616
            +L  +++ND    +  TF   D  F E      +    D EV + NK  Y  L VE R  GR   Q  A  SG   ++P  L+ +F E EL LL+ G  EID +DW +HT + G+  S ++  WFW  V S   E+KS LL+FATG +R+PV GF  L     P+ F   + +  E   LP + TCF  L +P YPD +TLE+ L +AI  
Sbjct:  605 SLTWILENDITDVIENTFSAEDDRFGETVTIDLKPGGRDIEVTNDNKKEYVQLIVEWRIQGRVKDQFSAFLSGFNELIPQELINVFDERELELLIGGMSEIDVDDWVKHTDYRGFTQSDEVVQWFWKAVKSWPTEKKSRLLQFATGTSRIPVNGFKDLQGSDGPRRF--TLEKSGEITQLPKSHTCFNRLDLPPYPDYETLEKKLTIAIEE 813          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: A0A7R9XPK2_9CHLO (HECT-type E3 ubiquitin transferase n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XPK2_9CHLO)

HSP 1 Score: 120 bits (300), Expect = 4.960e-29
Identity = 66/173 (38.15%), Postives = 97/173 (56.07%), Query Frame = 2
Query:  134 ANKALYASLAVESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEG--YASPQLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAALPKNFKVVMREFDEQRP----LPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFA 634
            +N A Y       +TYG+   Q R ++ G+  V+P     M   +E  LLLAG  E+D   W+  T + G  +AS     WFW  + SL+  ++ L++ FATG   +PVGGFAA    F ++  +    +     LP AATCF +L++P Y  K  LER++L+A+RHG+SGFA
Sbjct:   28 SNAAEYVYRLARFKTYGQCLWQCRRIARGLDAVLPREARRMLESHEAALLLAGESEVDVAAWRSATKYTGGYHASSAQIRWFWELMESLSHTDRRLVVWFATGSPSVPVGGFAASASGFTIMALDSSRTQGGGDLLPTAATCFHLLRLPRYATKARLERAVLLAVRHGSSGFA 200          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: A0A2B4RC73_STYPI (E3 ubiquitin-protein ligase HACE1 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RC73_STYPI)

HSP 1 Score: 127 bits (319), Expect = 9.340e-29
Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = 2
Query:  110 DPDTEVNDANKALYASLAVESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEGY-ASPQLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAAL-----PKNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFAFS 640
            D D ++ D NK  Y+    + +       +    S G+  V+P   L +FT +E  LL+ G  ++D  DW++HT ++   A   +  WFW  VT L  EEK+LL+KF+TG   +P+GGFAAL     P  F +   + +    +PMA+TCF MLK+  Y  +  L+  LL+AIRHGA GF+FS
Sbjct: 1235 DCDKKLTDDNKEEYSRFVSQFKLEKSIKEEVGEFSGGLHEVIPREFLSLFTADEFSLLINGVAKLDVGDWKKHTEYKQCTAEDDVIKWFWNIVTPLKEEEKALLIKFSTGSPCVPLGGFAALTGLSGPTKFTI--SKIEGLNKIPMASTCFNMLKLTSYSSEKHLKDKLLIAIRHGAEGFSFS 1415          
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Match: A0A7S0SCQ6_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SCQ6_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 1.080e-28
Identity = 81/228 (35.53%), Postives = 113/228 (49.56%), Query Frame = 2
Query:   62 LDLCFVEGGGKGSEAVDPDTEVNDANKALYASLAVESRTYGRWCRQARALS-SGIGRVVPLRLLCMFTENELGLLLAGPGEIDPEDWQRHTIFEG---YASPQLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFAALPKNFKV----VMR---------------------------EFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRHGASGFAFS 640
            +++  V GG     A  P   V DANK  Y +L +  +     C  A A + +G+G ++ L LL +FT  EL  LL G  +I  +DW+ HT + G    AS Q++ W W  +  L  +E++LLLKF TG +R+PVGGFA L     V    VMR                             D+   LP +ATCF  L++P+YP  + LER +  A+RHG  GFAF 
Sbjct:   28 VEVALVPGG-----ATRP---VTDANKDEYVALCLRHKLRQVSCSAAAAATRAGVGELISLDLLRVFTAPELACLLGGEADISVQDWREHTTYGGGYCRASDQVK-WLWRLIDRLGPDERTLLLKFTTGSSRMPVGGFAMLQGMGGVQWFNVMRVPAERHRSNARAPRGXXXXXXXXXXXXXXDDVYALPTSATCFNTLRLPEYPTFEVLERQVTTALRHGCEGFAFG 246          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7007.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTR0_9PHAE3.080e-7058.22HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FPN0_ECTSI1.230e-6857.41HECT domain and ankyrin repeat containing, E3 ubiq... [more]
UPI001CF2C3258.680e-3439.34E3 ubiquitin-protein ligase HACE1-like n=1 Tax=Acr... [more]
A0A4D9CRJ9_9STRA1.700e-3136.14HECT-type E3 ubiquitin transferase n=1 Tax=Nannoch... [more]
UPI00077B012B1.160e-3039.41E3 ubiquitin-protein ligase HUWE1-like n=1 Tax=Acr... [more]
UPI0009E55D216.130e-3038.80uncharacterized protein LOC110065378 n=1 Tax=Orbic... [more]
A0A0K3CH81_RHOTO9.330e-3038.39E3 ubiquitin-protein ligase n=4 Tax=Rhodosporidium... [more]
A0A7R9XPK2_9CHLO4.960e-2938.15HECT-type E3 ubiquitin transferase n=1 Tax=Pycnoco... [more]
A0A2B4RC73_STYPI9.340e-2938.25E3 ubiquitin-protein ligase HACE1 n=2 Tax=Stylopho... [more]
A0A7S0SCQ6_9CHLO1.080e-2835.53Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7007contigC-tenellus_contig7007:726..4530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPN0
Preferred nameikb-1
PFAMsAAA,Ank,Ank_2,Ank_3,C1_2,DUF4414,Death,HECT,Pkinase
Model size992
Max annot lvl2759|Eukaryota
KEGG koko:K09258,ko:K10592
KEGG Pathwayko04120,ko04668,map04120,map04668
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0042742,GO:0043207,GO:0050829,GO:0050896,GO:0051704,GO:0051707,GO:0098542
Exons4
Evalue4.18e-70
EggNOG OGsCOG0666@1|root,COG5021@1|root,KOG0504@2759|Eukaryota,KOG0939@2759|Eukaryota
EC2.3.2.26
Descriptionubiquitin protein ligase activity
Cds size627
COG categoryO
BRITEko00000,ko00001,ko01000,ko03000,ko03110,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7007.1.3prot_C-tenellus_contig7007.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7007 742..4181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.8178272-UTR-C-tenellus_contig7007:725..7411680790006.8178272-UTR-C-tenellus_contig7007:725..741Choristocarpus tenellus KU2346UTRC-tenellus_contig7007 726..741 +
1680790006.8757584-UTR-C-tenellus_contig7007:4181..45301680790006.8757584-UTR-C-tenellus_contig7007:4181..4530Choristocarpus tenellus KU2346UTRC-tenellus_contig7007 4182..4530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.8374352-CDS-C-tenellus_contig7007:741..8671680790006.8374352-CDS-C-tenellus_contig7007:741..867Choristocarpus tenellus KU2346CDSC-tenellus_contig7007 742..867 +
1680790006.8480124-CDS-C-tenellus_contig7007:1849..20311680790006.8480124-CDS-C-tenellus_contig7007:1849..2031Choristocarpus tenellus KU2346CDSC-tenellus_contig7007 1850..2031 +
1680790006.8563733-CDS-C-tenellus_contig7007:3326..34891680790006.8563733-CDS-C-tenellus_contig7007:3326..3489Choristocarpus tenellus KU2346CDSC-tenellus_contig7007 3327..3489 +
1680790006.864845-CDS-C-tenellus_contig7007:4025..41811680790006.864845-CDS-C-tenellus_contig7007:4025..4181Choristocarpus tenellus KU2346CDSC-tenellus_contig7007 4026..4181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7007.1.3

>prot_C-tenellus_contig7007.1.3 ID=prot_C-tenellus_contig7007.1.3|Name=mRNA_C-tenellus_contig7007.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=209bp
MDNDGAHNLGLTFGGLDLCFVEGGGKGSEAVDPDTEVNDANKALYASLAV
ESRTYGRWCRQARALSSGIGRVVPLRLLCMFTENELGLLLAGPGEIDPED
WQRHTIFEGYASPQLQGWFWAFVTSLTLEEKSLLLKFATGCARLPVGGFA
ALPKNFKVVMREFDEQRPLPMAATCFFMLKMPDYPDKDTLERSLLVAIRH
GASGFAFS*
back to top

mRNA from alignment at C-tenellus_contig7007:726..4530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7007.1.3 ID=mRNA_C-tenellus_contig7007.1.3|Name=mRNA_C-tenellus_contig7007.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3805bp|location=Sequence derived from alignment at C-tenellus_contig7007:726..4530+ (Choristocarpus tenellus KU2346)
GAACCTCAAGTTGGTGATGGACAATGACGGAGCCCATAACCTGGGGCTGA CCTTTGGGGGGCTTGACTTGTGCTTTGTGGAGGGAGGAGGGAAGGGCTCA GAGGCTGTGGACCCAGACACCGAAGTCAATGATGCCAATAAGGTATAGGA AGGCACAATAGGGTACAGTGTGGCATTGGGGTAGTTATCGGTTGTGATTT TTGCTTCAGATGGGCAGCAAATGAGCCAGGTGAAGACGTTGTATTTTCTA CATACGCCCACTCTCCCATCCTTGTCTCAAACCTTGTGTGTTGTACCATA AGCTCACCCCCAATACTAGATCGTAGGCCTGATGTTCTATGCCTACGATC TGAGTGCCGCATTATTGCAAGTGGAAGTTATAGTTTGTAAATGGTTAATA TGGGGATGTACTCCACATGGTGCCAGGAGGTGGGTAGTGGTTTGGTTTGG TGTCCTCTCTTTTTCTATTCTTTTTATTTTTTTTTCTTGATGCGTGTGGA CTAACGATTTGGTGACTTCAAAAAAGTATGTACTTTATGACTTCAAAAAA GTATGTACTTTATCCTCACCTGGTATTTCAGTTCAAACATTTGCGTTCTG AGTACATGTTTCTATCTACACACTTCTTTGGTTGTTACGTGAATGGAGTT TTTTTTAAAAAAATTGGTTGCTGAGAGGATGGCCTTAACACTTTCAGGTG GACCGCTTCCTCTTACAAATGACAAATGACAAATGACAGATTTTCAGACT TTTGAATTGTCTTGAGTTTGAAACTGTTTTGTTTTATGTCTTTCCTGTAC TACATGTGTGTTTTGAGTCATACATACTGGTTCTCTTGCCCGCAATCACC CCAACAAATCGAAGATTGGGATAAATCCTTTTGATAATAATAATAGATAT TTTGATAATAATAGATATTTTGATAATAATAGATATTTTGATAATAATAG ATATTTTGTCAACCTTTTGCATTCTCAAAGAAGAGGTGCTACAGCTCTTG TACCACAGTGGTACCTGTAACGACCTTCTCCTCCTCTCTATCAATGCCCC TCCACCCCTCCTCTCCCCTTCCATGTTTGTGTGTCCCCTTTTGTGGTATT TCTTAAACTGTTTTTACCCCGAAGGCCTTGTACGCGTCCCTTGCTGTTGA AAGTCGAACATATGGGCGGTGGTGTCGGCAGGCAAGGGCACTGTCTTCTG GTATTGGTCGTGTTGTGCCCTTGAGGCTATTGTGCATGTTCACAGAGAAT GAGCTGGGACTGCTGCTGGCCGGGCCTGGAGAAATAGACCCAGAAGACTG GCAGAGGTGATGGCTACTCCTCTTCTCAGTGATCGGTTTCAGCAGCATGT ACAGATTTTAATTTGTTGTTTACATGTTGGTTGATGAAAGGGTTTAATGG TTTAATGGTTTAATGGTTTAATGGTTTAATGGTTTAATGGCGTGTGGCGT GTAGTGTGTTGTGTCTTGGTTTTGGGTTTTCATTTGCATCTTTGAAGGGG ATTGAGTGTCTTTGTTCTGAATATGTGTGAATACATGTGAATACATGCGC CATACACAGGTGCAACGAGGAAGGATGTTACAAGTTTGTCACGCTTGGGG TAATATTGCAATGCCATCCATGGCTTGCCCTTTTAACCTTGTGGTGAGAT TGATCTGATGGACAGTAGGTGGAAGAAGAAGTGAGACTTCACTACTTGAG ATTTTATGAGCCTATCCCTGCTTGACCTTGTTGGCCATGATAACCTAATC TGCTTTTGAAAATCTGTTGATGTGTGTAGTGTCTGTGTATGTTTTGAGTG TTTTTCACCCTAGTGAGGTTATGACACACAGGACTGTTACAATTTGTAGT TGAAGTGTGTTCCATGCAAATGGTATGATTGACAGTCTATCTTGCTCTGT GTGCAGTATGCAGGGGGTGAATTTGCAATGATACAGCATGGAGTTACCAA GTGAGCTCCAGGGTTGAGTGGTGTGGGTACAGTTTGCTTCAGTTCAGACC TGTTGTTCAGAACAGGACGGTTTGAGTGCCTTGTTATTGAGAACTAATGT AGATTTTTTTTGAGAAGGAAAGGTAAAGTTTTGGGAAAGGCAGATTTATA TATTTGGTTTGATTGCTGATGGATGAACTCTTTGATCACTGTTGTGTTAT TTTGTTTTCCAAGGAGACACAACATCTCTCCCTTTGATGCCTTGATTATT TGCCAGTAGTTTAATTTTTTTGGAGGCCAGGGTCACCCGCCCCAATCAAG AGGAGGGCTGGCAGTGTCAGTGACCACACCGCTGACATGAGCAGTATATG TTCCTTGCCATGAAGCAGGCATTGATGCGCCCATTATTCTTGTCTTGACT CCCCCTCCCCCCTATAGCCTTTATCCCCAGTCTACACTTTAACCCTAACC CTAACTCTTATTGCATCGTCTTTCGCATATGTGGTAATTTACTTTTCAGA CTGACTACATCATACAGCCATTGGCAGCTGCAATACTCATGTAACTGTTG TTCACTCCTGTCATTCACTCCTTTCATCATCTTTGACTATAACCCTTTCC CTAACTCCCTTTCCCTAACTCCCTTTCCCTAAATTTGACTATGGGTGCCA GACACACAATATTTGAGGGATACGCATCACCACAACTTCAGGGATGGTTC TGGGCCTTTGTTACATCTCTCACTCTTGAGGAGAAGTCACTGCTTCTTAA GTTTGCAACGGGATGCGCCCGCCTGCCTGTTGGAGGGTTTGCAGCCCTGC CCAAGAATTTCAAGGTGAGGGCAATCGTCACCTAGCTCTTTCTGGTTCTC TTGTTTGTTCTTTTGTTTATTTCCTGGAACAGGATTTTAGCTTCGGAAAT AGAATGGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCACATCTTTTCTCT TGGAATGGAGCTTAGCTCTTGAATTTTTTTGAATTGTTTTTATATTTCAG TTGATGAATTAGCACTGTTTCCTGATACATACACGGGTAGGAAATCAGAC CACTACAACAATAATAATAATTTGTCTAATGGTTGATCAAGAAATCATAA TGCCATGTGCAGCTTAATGCAAGGAAAACCTATAGCTTGTGCTCCTGCTT TGACAGCGTGATGCTTACATGTGTGTGATAGCTTGTGGCATCTCAGAGGT TCTTCATCTTTCTGTCCTCTCTTATCTTGGTCCGTCCTTCATCTACCACA ACTAATTCATGTCCTTCATCTTATCTTTTAATCATAGGGAGGTGTTGACT TACACTCCACTCCTTTCTTTGTCCTTGTTGTGGAATGTTACGGAACCAAG GTTGTAATGAGGGAGTTCGATGAACAACGGCCTCTTCCAATGGCCGCAAC ATGCTTCTTCATGCTCAAGATGCCAGACTACCCAGACAAGGACACATTAG AGCGTTCCCTCCTCGTGGCTATTCGACATGGGGCATCAGGGTTTGCGTTC TCTTGAGGCTGATAGCTAGTATTGTTGTTGATCGTGGATCTCTGTCCTGA CCGTGTAGACTGTACCCATCTCTCAGCTCCGTCCCCTGTACTGGGGTGCA GGTTGGTGCACAATAATTTATCAGTGGAGTAGACTATTGTTGTACAAGGG TCTCTTGTGCGGATGACACAGATACCAAGGTGATGGAAAACTTCCTAGTT CAATGTGTTTGGTTTTAGTGTTGTGTGAGTATAAGGTGGGCCTTTGTTGC GTGTTATATCTTTATTAGGTTGTGGTTGTGTCTCTTTGGAGTGTTACGGC AAAAATCTCCATCGGAGTAATTATCGACTGAAGTCGTCACGAAGTATAAT ATAGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7007:726..4530+

>mRNA_C-tenellus_contig7007.1.3 ID=mRNA_C-tenellus_contig7007.1.3|Name=mRNA_C-tenellus_contig7007.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=627bp|location=Sequence derived from alignment at C-tenellus_contig7007:726..4530+ (Choristocarpus tenellus KU2346)
ATGGACAATGACGGAGCCCATAACCTGGGGCTGACCTTTGGGGGGCTTGA
CTTGTGCTTTGTGGAGGGAGGAGGGAAGGGCTCAGAGGCTGTGGACCCAG
ACACCGAAGTCAATGATGCCAATAAGGCCTTGTACGCGTCCCTTGCTGTT
GAAAGTCGAACATATGGGCGGTGGTGTCGGCAGGCAAGGGCACTGTCTTC
TGGTATTGGTCGTGTTGTGCCCTTGAGGCTATTGTGCATGTTCACAGAGA
ATGAGCTGGGACTGCTGCTGGCCGGGCCTGGAGAAATAGACCCAGAAGAC
TGGCAGAGACACACAATATTTGAGGGATACGCATCACCACAACTTCAGGG
ATGGTTCTGGGCCTTTGTTACATCTCTCACTCTTGAGGAGAAGTCACTGC
TTCTTAAGTTTGCAACGGGATGCGCCCGCCTGCCTGTTGGAGGGTTTGCA
GCCCTGCCCAAGAATTTCAAGGTTGTAATGAGGGAGTTCGATGAACAACG
GCCTCTTCCAATGGCCGCAACATGCTTCTTCATGCTCAAGATGCCAGACT
ACCCAGACAAGGACACATTAGAGCGTTCCCTCCTCGTGGCTATTCGACAT
GGGGCATCAGGGTTTGCGTTCTCTTGA
back to top