mRNA_C-tenellus_contig7001.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7001.1.1
Unique NamemRNA_C-tenellus_contig7001.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7001.1.1 vs. uniprot
Match: D8LRM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.690e-25
Identity = 90/175 (51.43%), Postives = 118/175 (67.43%), Query Frame = 1 
Query:   22 IQSDGQRRLAESEAQQKASERSYERSMAALRDDLHRKLEEEEARRVREVGEARRKSKAVAGALQLLQGELRESEAKGSELEGQVSALSARNRNGSIIRGSGVGVTSGTGGSAXXXXXXXXXXX----------EATEAEIATLRRQLQAAMNAKDLAEKVVKEAKSRAEEEGTRR 516
            +++   RR  E+EA  +A ER+++R++ A+R++  +KL EEEARRVREV +AR+KSKAV  ALQ LQGEL +SEAKGS LE QVS LSAR         +  G   G G SAXXXXXXXXXXX          E TEAE+ +LRRQ++AA  AK+ A++   EA+ RA+EE  +R
Sbjct:  608 METHADRRFMEAEASHRAVERNHDRALVAIREEAKKKLLEEEARRVREVSDARKKSKAVVEALQTLQGELTQSEAKGSGLERQVSQLSARMSRAGSSSVAPAGGNGGDGSSAXXXXXXXXXXXXXXSSGARGSEVTEAEMTSLRRQMKAATEAKETAQRSALEARLRADEETKKR 782
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7001.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRM2_ECTSI6.690e-2551.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7001contigC-tenellus_contig7001:405..2215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size522
Hectar predicted targeting categoryother localisation
Exons4
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.5733244-CDS-C-tenellus_contig7001:404..5361680790006.5733244-CDS-C-tenellus_contig7001:404..536Choristocarpus tenellus KU2346CDSC-tenellus_contig7001 405..536 +
1680790006.5830827-CDS-C-tenellus_contig7001:1022..11031680790006.5830827-CDS-C-tenellus_contig7001:1022..1103Choristocarpus tenellus KU2346CDSC-tenellus_contig7001 1023..1103 +
1680790006.5972052-CDS-C-tenellus_contig7001:1463..16971680790006.5972052-CDS-C-tenellus_contig7001:1463..1697Choristocarpus tenellus KU2346CDSC-tenellus_contig7001 1464..1697 +
1680790006.6057637-CDS-C-tenellus_contig7001:2140..22151680790006.6057637-CDS-C-tenellus_contig7001:2140..2215Choristocarpus tenellus KU2346CDSC-tenellus_contig7001 2141..2215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7001.1.1prot_C-tenellus_contig7001.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7001 405..2215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7001.1.1

>prot_C-tenellus_contig7001.1.1 ID=prot_C-tenellus_contig7001.1.1|Name=mRNA_C-tenellus_contig7001.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=174bp
MQIPPFNIQSDGQRRLAESEAQQKASERSYERSMAALRDDLHRKLEEEEA
RRVREVGEARRKSKAVAGALQLLQGELRESEAKGSELEGQVSALSARNRN
GSIIRGSGVGVTSGTGGSARRGSVDSARLGEATEAEIATLRRQLQAAMNA
KDLAEKVVKEAKSRAEEEGTRRR*
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mRNA from alignment at C-tenellus_contig7001:405..2215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7001.1.1 ID=mRNA_C-tenellus_contig7001.1.1|Name=mRNA_C-tenellus_contig7001.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1811bp|location=Sequence derived from alignment at C-tenellus_contig7001:405..2215+ (Choristocarpus tenellus KU2346)
ATGCAAATTCCACCATTCAACATTCAGTCTGATGGACAACGTCGTCTTGC
GGAGAGTGAAGCTCAGCAGAAGGCATCTGAACGCAGCTATGAGAGGAGCA
TGGCAGCCCTCAGAGACGATTTGCACAGGAAGGTTAGCTGTGATGGCGAA
CGCATGATAGGTTAAACAGGGGACACAGAGACATGCCATCATTTCCTTAC
TTTCACTTTTGGACCTATGTGAAACCCCCATCACGTCACTATGGATTTTC
ATTGCGCATAATGGTCCTAGCACTTTCTGGTCCCATGATGAGTAGTCCTG
GTGTCTATATGTAGATGAACCAATAGATTTTTAGTACTCATTGTATACAG
TGCACAGACAAGCTTAGCTTTGCAGTTTCTAGGCTAGGGGTGCACAAATA
ATACCATCCCTGCCATAGCTATCGGCAGTGCTATCTGCCTCTTCGAGAAG
CTTGAATACCATCTGCTCCAATGCATGCATGACTGCAATAGCCCAATGTG
TGATATCATGACCACAATAGTAGTTCAGTAGTGCTGGCCAAACTACACGC
CTCTTGATTTTGCAACATGCACGGCCTCAAGTACCACATATATCTCACTA
ACATTTCACCTCTCACAGCTGGAGGAAGAGGAAGCAAGAAGGGTTCGAGA
GGTTGGAGAGGCTCGGCGGAAGTCTAAAGCTGTGGCTGGTGCACTACAGG
TGAGGAGACAACATTAGCTCCCTGACTTACCCACCCTCTCCAGGTCCAGG
TCCTTTGCTGTAAACAGAGAGAGACACGAAGGAGAGCATGGCAGAGACAT
GTAGATGTGTGTTGCAATGAAGTGCTCAATACGTTCACCTTGAGCATACT
TTCCGCGGTGTGTATGCCCTAGGTGCATTCCAATAAATGTTTTCCACTTG
ATTTAAAGCTGGTACTTCAAGAGGAGGGCAATGATGAGTTCATATGGACT
GCAGCAATAAGAATGTCATGAGAACTGCCAATGCCGACCTACAACCATTT
TCTACCATCCACGTTGTGACCACCCTTCTAACCTCATCTCCTCTTGTTGG
GTGGAGAAGTTGCTGCAAGGAGAGCTGAGAGAGTCAGAAGCCAAGGGGTC
AGAGCTAGAAGGTCAGGTCTCAGCTCTGTCAGCACGAAATCGGAATGGAT
CAATCATTAGGGGGAGTGGGGTGGGGGTTACAAGTGGCACAGGAGGATCT
GCCAGACGAGGAAGTGTGGATAGTGCAAGACTAGGGGAGGCAACCGAAGC
AGAAATAGCCACGCTTAGGCGTCAGCTGCAGGCTGCCATGAATGTGGGTT
ATTATGAAGCGTGTCCTAACATCTAGAGAGCAATAATACGGAGAGAAAAC
AGCTTTTTGTGAGTTACTGTGTTGGGAGGTCCTCAATATGAAACAATTGC
TGCTGCTCACACTCTCATGCAGCATCATGCCTTTTCATGTTGCAATGCCA
GCATCTGCGCTGGTCTCTCCTCTAGCTACTACTCAGTTTCCAAAGTCACA
CATGATAACCTCTTGGTAACCAGGACCTTACCTTGTGCCAAAACACCTTT
CAAAGATCCTCATGACCTTGTTTCAATTGCCCTGCAACCCCTCCTCTTCC
TTCCTTTCTAGTAAAAAGTGATACAACAAAAACTGTAGAACGAACTGGAA
TACTCTGGGCATTTCATACTTTAGGGATTACTATTTGTCGACCATCACCA
GAAATACACACCATGAATGGCTGTCCACTTTGTCAGGCCAAGGATTTGGC
CGAGAAAGTCGTCAAGGAGGCAAAGTCCAGGGCTGAGGAGGAAGGCACCC
GAAGGAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7001:405..2215+

>mRNA_C-tenellus_contig7001.1.1 ID=mRNA_C-tenellus_contig7001.1.1|Name=mRNA_C-tenellus_contig7001.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=522bp|location=Sequence derived from alignment at C-tenellus_contig7001:405..2215+ (Choristocarpus tenellus KU2346)
ATGCAAATTCCACCATTCAACATTCAGTCTGATGGACAACGTCGTCTTGC
GGAGAGTGAAGCTCAGCAGAAGGCATCTGAACGCAGCTATGAGAGGAGCA
TGGCAGCCCTCAGAGACGATTTGCACAGGAAGCTGGAGGAAGAGGAAGCA
AGAAGGGTTCGAGAGGTTGGAGAGGCTCGGCGGAAGTCTAAAGCTGTGGC
TGGTGCACTACAGTTGCTGCAAGGAGAGCTGAGAGAGTCAGAAGCCAAGG
GGTCAGAGCTAGAAGGTCAGGTCTCAGCTCTGTCAGCACGAAATCGGAAT
GGATCAATCATTAGGGGGAGTGGGGTGGGGGTTACAAGTGGCACAGGAGG
ATCTGCCAGACGAGGAAGTGTGGATAGTGCAAGACTAGGGGAGGCAACCG
AAGCAGAAATAGCCACGCTTAGGCGTCAGCTGCAGGCTGCCATGAATGCC
AAGGATTTGGCCGAGAAAGTCGTCAAGGAGGCAAAGTCCAGGGCTGAGGA
GGAAGGCACCCGAAGGAGGTGA
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