mRNA_C-tenellus_contig6868.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6868.2.1
Unique NamemRNA_C-tenellus_contig6868.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6868.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6868contigC-tenellus_contig6868:5057..5976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789997.8827024-CDS-C-tenellus_contig6868:5057..52701680789997.8827024-CDS-C-tenellus_contig6868:5057..5270Choristocarpus tenellus KU2346CDSC-tenellus_contig6868 5058..5270 -
1680789997.895212-CDS-C-tenellus_contig6868:5895..59761680789997.895212-CDS-C-tenellus_contig6868:5895..5976Choristocarpus tenellus KU2346CDSC-tenellus_contig6868 5896..5976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6868.2.1prot_C-tenellus_contig6868.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6868 5058..5976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6868.2.1

>prot_C-tenellus_contig6868.2.1 ID=prot_C-tenellus_contig6868.2.1|Name=mRNA_C-tenellus_contig6868.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=98bp
HSVILSVRCYALQALNCSMGKKERVPLTDVARMLCLRDTEHAFQLCKAMS
LPVSWDETPAMSVPRPLHSKREPVTSPAGSSGPRDAGGMPMECEKALS
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mRNA from alignment at C-tenellus_contig6868:5057..5976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6868.2.1 ID=mRNA_C-tenellus_contig6868.2.1|Name=mRNA_C-tenellus_contig6868.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=920bp|location=Sequence derived from alignment at C-tenellus_contig6868:5057..5976- (Choristocarpus tenellus KU2346)
CACAGTGTGATCTTGTCAGTGAGGTGCTATGCGCTTCAAGCCTTGAACTG
CTCCATGGGCAAGAAGGAGAGGGTTCCCTTGGTGAGAGAGAGGCCTCAAA
AGAGTTTAGTTGAGAGAGAGGACATACCCTTTTTTTTTTTTTTTGAGCTC
CTTGGTTTTGTTCTTGGAGGGGGCGGCGGCGGGCATGGCAGACTTCTTTT
TTTTGCAATGATTTTTTTTTTAATATACTCTGCTAGTGATGTTGTTGTAG
AGCTAGCTCTGTTGCATGGTGTTGATTTTGTATTGCAATAATCCCGACAC
TGTTGTTGCAGTTACAGTAGGATTTTTACACATATTTTCTTCATGGACAA
AGACAGGGAATTAAAAAAAATATGGTGTTTTCAGGTAGGTTGATAGGTAG
TTGCGACTAGACCTGTGAATGGTGTTAACTGCCCGCCAGAAACCCTCCCT
CCCTACCTCCCTCCCTTGTTGAGCATGTACCTGGGGTCACAGAATAGACT
ACGATTGTTGGGGCCAGGAGGTGTTTTGTTTTGTTATATTAAATTGCACG
GTCTTGGCCTGGGGATATGTTCAACATTGCAGTTTGTTTCTTCTGTTTTT
TTTGTTTTTGTTTTTTAGAGGGGTACACCTCTCTGTACACTAGAGAATCG
TAACCTCCTTTCACAACTTTTATTTTATTTTATTTTATTTATTGTTTGTC
TTGCAGACAGATGTGGCGCGAATGTTGTGTTTACGAGACACCGAGCACGC
CTTCCAGCTCTGCAAAGCCATGTCATTGCCGGTGTCGTGGGATGAAACGC
CTGCCATGTCGGTGCCGAGACCACTACACTCGAAAAGAGAGCCAGTCACA
TCCCCTGCAGGCAGCTCCGGCCCACGAGACGCTGGTGGCATGCCAATGGA
GTGTGAAAAAGCACTGAGTC
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Coding sequence (CDS) from alignment at C-tenellus_contig6868:5057..5976-

>mRNA_C-tenellus_contig6868.2.1 ID=mRNA_C-tenellus_contig6868.2.1|Name=mRNA_C-tenellus_contig6868.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=294bp|location=Sequence derived from alignment at C-tenellus_contig6868:5057..5976- (Choristocarpus tenellus KU2346)
CACAGTGTGATCTTGTCAGTGAGGTGCTATGCGCTTCAAGCCTTGAACTG
CTCCATGGGCAAGAAGGAGAGGGTTCCCTTGACAGATGTGGCGCGAATGT
TGTGTTTACGAGACACCGAGCACGCCTTCCAGCTCTGCAAAGCCATGTCA
TTGCCGGTGTCGTGGGATGAAACGCCTGCCATGTCGGTGCCGAGACCACT
ACACTCGAAAAGAGAGCCAGTCACATCCCCTGCAGGCAGCTCCGGCCCAC
GAGACGCTGGTGGCATGCCAATGGAGTGTGAAAAAGCACTGAGT
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