mRNA_C-tenellus_contig6855.1.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI) HSP 1 Score: 176 bits (447), Expect = 4.360e-48 Identity = 78/121 (64.46%), Postives = 101/121 (83.47%), Query Frame = 2 Query: 581 SNRSLVRRPSTDSTRRLANRGLQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNGELESINLISNNLDGEIPDSVCDMISLRELNLSYNFEMRGWIPKAIGALTHLKTLHLYGAGLS 943 S R+L R PS+ + RR+AN+GLQDLYDWLGG +WKC+ GW+DPGS+VR WHGLTI +G+L SINLISN+L+GE+P+S+C++ SL+ LNLSYNF +RGWIP+ +G L LKTLHLY A L+ Sbjct: 19 SGRTLARLPSSSTQRRMANQGLQDLYDWLGGDNWKCRDGWLDPGSDVREWHGLTITTSGDLVSINLISNDLEGEMPESLCNLYSLQHLNLSYNFGLRGWIPEGLGDLIKLKTLHLYSALLT 139
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: D7FV03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV03_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 8.000e-12 Identity = 30/58 (51.72%), Postives = 46/58 (79.31%), Query Frame = 2 Query: 623 RRLANRGLQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNGELESINLISNNLD 796 RRLAN+ L D+++ LGG W+ K+GW+ PG++V+ WHG+T+N G L S+NL+SN+L+ Sbjct: 14 RRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKKWHGVTVNA-GSLVSLNLMSNDLE 70
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: A0A6N9AKJ3_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N9AKJ3_9BACT) HSP 1 Score: 65.1 bits (157), Expect = 2.320e-7 Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 2 Query: 614 DSTRRLANRGLQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNGELESINLISNNLDGEIPDSVCDMISLRELNLSYNFEMRGWIPKAIGALTHLKTLHLYGAGL 940 D+ + L LY+ G +W + W+ + + WHG+TIN+ G++ S++L NNL+G +P + D+ SL L+LS N + G +P ++ L L L L G GL Sbjct: 374 DNCEDMERSALIALYNAADGGNWTGRQNWLTA-APLSAWHGVTINDQGQVTSLDLADNNLEGTLPSRLSDLRSLSILDLSNNSSLSGPLPASLVGLG-LTVLKLGGTGL 480
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: A0A0W0YDM6_9GAMM (Leucine Rich repeats (2 copies) n=2 Tax=Legionella TaxID=445 RepID=A0A0W0YDM6_9GAMM) HSP 1 Score: 62.8 bits (151), Expect = 3.130e-7 Identity = 29/94 (30.85%), Postives = 49/94 (52.13%), Query Frame = 2 Query: 644 LQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNGELESINLISNNLDGEIPDSVCDMISLRELNLSYNFEMRGWIPKAIGALTHLKTLHL 925 L++ Y G +W + W+ WHG+ + NG + + L N L+G +PD++C++ L+ L LS+N + G IP IG L+ + L Sbjct: 20 LENFYKATNGTNWIRQDNWLSDSISYCEWHGVICDKNGHVTELQLYDNGLEGTLPDTLCNLTELKTLYLSFN-HIGGRIPATIGQCKKLENIWL 112
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: A0A1G8C3U1_9FLAO (Leucine rich repeat-containing protein n=3 Tax=Bacteria TaxID=2 RepID=A0A1G8C3U1_9FLAO) HSP 1 Score: 62.0 bits (149), Expect = 5.480e-7 Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 2 Query: 644 LQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNGELESINLISNNLDGEIPDSVCDMISLRELNLSYNFEMRGWIPKAIGALTHLKTLH 922 L LY G+ WK + D + V WHG+ + + ++ +++L NNL GEIP + +++SL+EL+L N ++ G IP AIG L +K L+ Sbjct: 29 LVKLYQSTNGKQWKVR---WDLSAPVSTWHGIKVQDE-KVIAVHLADNNLVGEIPTDIVNLVSLQELDLHKN-QISGTIPSAIGKLKDMKVLN 116
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: A0A1W9X1W5_9DELT (Fibronectin type-III domain-containing protein n=1 Tax=Desulfobacteraceae bacterium 4572_88 TaxID=1972444 RepID=A0A1W9X1W5_9DELT) HSP 1 Score: 61.2 bits (147), Expect = 2.090e-6 Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = 2 Query: 644 LQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNGELESINLISNNLDGEIPDSV-CDMISLRELNLSYNFEMRGWIPKAIG 895 L + Y+ G W KTGW+ G +W G+T + +INL+ NNL G +P S+ D+ +L+ELNL N + G IP IG Sbjct: 38 LINFYNSTAGSDWNVKTGWLGNGGTECDWEGITCEGGDTVTAINLVFNNLVGNLPVSLLADLSNLQELNLFGN-HLSGTIPPEIG 121
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: A0A7S1Z4T5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4T5_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.260e-6 Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 2 Query: 644 LQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNG--ELESINLISNNLDGEIPDSVCDMISLRELNLSYN 859 L +LY+ LGG SWK + GW+DP V +W G+T ++ ++SI+L N L G++P S+ ++ L E+N S N Sbjct: 615 LTELYNSLGGASWKVQHGWLDPDISVCSWWGITCVSDSVVSVDSIHLNQNGLKGDVPSSLFELRYLDEINFSDN 688
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: UPI0018CA9878 (leucine-rich repeat domain-containing protein n=2 Tax=unclassified Flavobacterium TaxID=196869 RepID=UPI0018CA9878) HSP 1 Score: 59.7 bits (143), Expect = 3.180e-6 Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 2 Query: 644 LQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNGELESINLISNNLDGEIPDSVCDMISLRELNLSYNFEMRGWIPKAIGALTHLKTL 919 L LY+ G W K P V +W+G+T+ + ++ SINL +NNL GEIP+ + ++++L EL+L N + G +P +G L +L TL Sbjct: 29 LVKLYEKTNGNQWITKWDLTKP---VSSWYGVTVQDE-KVVSINLANNNLVGEIPNDIVNLVNLEELDLHKN-HISGTVPSLVGNLKNLTTL 115
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: A0A371QH94_9BACT (Uncharacterized protein n=2 Tax=Rhodohalobacter sp. SW132 TaxID=2293433 RepID=A0A371QH94_9BACT) HSP 1 Score: 60.1 bits (144), Expect = 5.280e-6 Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 2 Query: 638 RGLQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTINNNGELESINLISNNLDGEIPDSVCDMISLRELN 847 R L+DLY G W T W+D G+ W+G+ + NG + ++L NNLDG +P S+ ++ LR LN Sbjct: 48 RALEDLYHATNGDQWTYNTAWLD-GNPTDRWYGVRTDRNGRVVRLDLYQNNLDGTLPQSIGNLTRLRYLN 116
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Match: A0A1V1NRM2_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Magnetoglobus multicellularis str. Araruama TaxID=890399 RepID=A0A1V1NRM2_9DELT) HSP 1 Score: 58.5 bits (140), Expect = 5.500e-6 Identity = 34/113 (30.09%), Postives = 61/113 (53.98%), Query Frame = 2 Query: 644 LQDLYDWLGGQSWKCKTGWMDPGSEVRNWHGLTIN--NNGELESINL-----------ISNNLDGEIPDSVCDMISLRELNLSYNFEMRGWIPKAIGALTHLKTLHLYGAGLS 943 L D+Y+ GG++W+ GW+ W+G+ + +N ++++ L + NNL GE+P+S+ +++SL+ L LS N + +P IG L +L+ L +Y LS Sbjct: 19 LVDIYNSTGGENWRNNEGWLGEAGTECEWYGIECSYPHNTFVQALRLYFPSPDPPHDIVGNNLTGELPESIQNLVSLKSLYLSCN---KLTLPPEIGNLYNLEHLEMYDNNLS 128 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6855.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig6855.1.2 >prot_C-tenellus_contig6855.1.2 ID=prot_C-tenellus_contig6855.1.2|Name=mRNA_C-tenellus_contig6855.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=257bp MRSRYTERETFGGMHRGIDERKHEHQYSMDPEPKLPSARSNRSLVRRPSTback to top mRNA from alignment at C-tenellus_contig6855:37..2956- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig6855.1.2 ID=mRNA_C-tenellus_contig6855.1.2|Name=mRNA_C-tenellus_contig6855.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2920bp|location=Sequence derived from alignment at C-tenellus_contig6855:37..2956- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig6855:37..2956- >mRNA_C-tenellus_contig6855.1.2 ID=mRNA_C-tenellus_contig6855.1.2|Name=mRNA_C-tenellus_contig6855.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=771bp|location=Sequence derived from alignment at C-tenellus_contig6855:37..2956- (Choristocarpus tenellus KU2346)back to top |