mRNA_C-tenellus_contig6848.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE) HSP 1 Score: 253 bits (645), Expect = 2.830e-78 Identity = 118/169 (69.82%), Postives = 141/169 (83.43%), Query Frame = 1 Query: 4 LRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGYLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIHN 510 +RLKSD K I LRA+G W+S+LNT+++SWD+ N RSY++A+SEV++ PP TCVG AK D GEAR DIINS+V +LG GTEAYGIT+KVRGFC DLSN++LFDRV VRG+IRFS+IHHNYFGMY+YGHQDGLWE+NLMH NA+YGFDPHDDSDNLRIHN Sbjct: 129 MRLKSDS-KVIELRAHGGWLSLLNTELSSWDVDEADYASNYSAPRSYVTAISEVLDSPPQTCVGHAKNDAGEARFDIINSEVHHLGHYGTEAYGITWKVRGFCVDLSNEDLFDRVNVRGDIRFSDIHHNYFGMYTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHN 296
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI) HSP 1 Score: 226 bits (577), Expect = 4.180e-68 Identity = 111/173 (64.16%), Postives = 131/173 (75.72%), Query Frame = 1 Query: 1 ELRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDS---RSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGYLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIHN 510 ELR+ S ++L +G +ISILNTKVTSW + D D RSY+SA+SE+ + P DTC G A D GEARLDIINSDVGYLG+ E+YG+TYKVRG+CTD SN E+FDRV VRG+IRFS+IHHN+FG YSYGHQDGLWE+N M N+ YGFDPHDDSDNLRIHN Sbjct: 121 ELRIASSSTNALHLNTFGGYISILNTKVTSWSVSNKEPDAGAYDGSNPRSYMSAVSEMTH-PSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGHQDGLWEYNTMRNSGYYGFDPHDDSDNLRIHN 292
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI) HSP 1 Score: 223 bits (567), Expect = 4.670e-66 Identity = 109/169 (64.50%), Postives = 127/169 (75.15%), Query Frame = 1 Query: 4 LRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGYLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIHN 510 L L S EKFINLRA+G + + T V SWD+ A TVDEN ED RSY+SA+SEVI DP +TC G AK D GEAR+DII+S+V +LG+ +E+YGI YKVRGFC DLSN ELFD V V G+I S+IH NYFG YSYGHQ G W HN MH+N YGFDPHDDSD + IHN Sbjct: 147 LLLASSPEKFINLRAHGGELMLDGTHVESWDLAAGTVDENNEDGRSYLSAISEVITDPAETCDGTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIHN 315
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI) HSP 1 Score: 213 bits (543), Expect = 3.080e-64 Identity = 108/177 (61.02%), Postives = 129/177 (72.88%), Query Frame = 1 Query: 4 LRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVG--------YLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIHN 510 +RLKSD K I LRA+G W+S+LNT+++SWD+ N RSY++A+SEV+ PP TCVG AK D GEAR D SDV + F + Y +VRGFC DLSN++LFDRV VRGNIRFS+IHHNYFGMY+YGHQDGLWE+NLMH NA+YGFDPHDDSDNLRIHN Sbjct: 53 MRLKSDS-KVIELRAHGGWLSLLNTELSSWDVDEADYASNYSAPRSYVTAISEVLETPPQTCVGHAKNDAGEARFD---SDVEPRAAPSAQHTRFFSLQTYA-RQQVRGFCVDLSNEDLFDRVNVRGNIRFSDIHHNYFGMYTYGHQDGLWEYNLMHENAKYGFDPHDDSDNLRIHN 224
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE) HSP 1 Score: 206 bits (523), Expect = 9.980e-63 Identity = 99/169 (58.58%), Postives = 124/169 (73.37%), Query Frame = 1 Query: 1 ELRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGYLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIH 507 ELRL S E FINLRA+G + ++TKV SWD N+ DE+ D RSYISA+SE+I D +TC G AK GEAR+DI +S++GYLG+ +E+YG+T+KVRGFC D SN E+FD V V GN+ S+IHH FG+Y+YGHQ G W N MH+N+ YGFDPHDDSD L IH Sbjct: 24 ELRLLSTSETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIH 192
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: A0A6H5KBD3_9PHAE (MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD3_9PHAE) HSP 1 Score: 211 bits (538), Expect = 5.650e-62 Identity = 110/189 (58.20%), Postives = 128/189 (67.72%), Query Frame = 1 Query: 4 LRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGY--------------------LGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIHN 510 L L S EKFIN+RA+G + + T V SWD+ A TVDEN ED RSY+SA+SEVI DP +TC G AK D GEAR+DII+S+V LG+ +E+YGI+YKVRGFCTDLSN ELFD V V G+I S+IH NYFG YSYGHQ G W HN MH+N YGFDPHDDSD L IHN Sbjct: 107 LLLASSPEKFINVRAHGGELMLDGTHVESWDLAAGTVDENNEDGRSYLSAISEVITDPTETCDGTAKNDMGEARMDIIDSEVNRTTQTSHSAPLTSRLPQYKTDLGWYDSESYGISYKVRGFCTDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYLTIHN 295
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 208 bits (530), Expect = 2.120e-61 Identity = 102/169 (60.36%), Postives = 122/169 (72.19%), Query Frame = 1 Query: 1 ELRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGYLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIH 507 ELRL S + FI+LRAYG + L+TKV +WD N D++ D RSYISA+SEVI D TC G AK + GEAR+DI NS++ YLG+ GTE YG+T+KVRGFC D N ELFD V V GNI S+IHHN FG+Y+YGHQ G W N MH+N+ YGFDPHDDSD L IH Sbjct: 101 ELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIH 269
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 206 bits (524), Expect = 3.020e-61 Identity = 99/169 (58.58%), Postives = 125/169 (73.96%), Query Frame = 1 Query: 1 ELRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGYLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIH 507 ELRL S +E FINLRA+G + ++TKV SWD N+ DE+ D RSYISA+SE+I D +TC G AK GEAR+DI +S++GYLG+ +E+YG+T+KVRGFC D SN E+FD V V GN+ S+IHH FG+Y+YGHQ G W N MH+N+ YGFDPHDDSD L IH Sbjct: 130 ELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIH 298
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 204 bits (519), Expect = 3.330e-61 Identity = 98/169 (57.99%), Postives = 122/169 (72.19%), Query Frame = 1 Query: 1 ELRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGYLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIH 507 ELRL S + +INLRA+G + + TKV SWD N+ DE+ D RSYISA+SE+I D +TC G AK GEAR+DI NS++GYLGF +E+YG+T+KVRGFC D SN +FD V V GN+ S+IHH FG+Y+YGHQ G W N MH+N+ YGFDPHDDSD L IH Sbjct: 133 ELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIH 301
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.060e-60 Identity = 100/169 (59.17%), Postives = 125/169 (73.96%), Query Frame = 1 Query: 1 ELRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISALSEVINDPPDTCVGFAKKDRGEARLDIINSDVGYLGFAGTEAYGITYKVRGFCTDLSNQELFDRVQVRGNIRFSNIHHNYFGMYSYGHQDGLWEHNLMHNNAQYGFDPHDDSDNLRIH 507 ELRL S + FINLRA+G + L+TKV +WD N D + ED RSY+SA+SEVI D TC G AK + GEAR+DI +S++GYLG+ G+E+YG+T+KVRGFC D SN +LF+ V V GNI S+IHHN FG+Y+YGHQ G W N MH+N+ YGFDPHDDSD L IH Sbjct: 127 ELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIH 295 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6848.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig6848.1.1 >prot_C-tenellus_contig6848.1.1 ID=prot_C-tenellus_contig6848.1.1|Name=mRNA_C-tenellus_contig6848.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=235bp ELRLKSDDEKFINLRAYGAWISILNTKVTSWDMIANTVDENLEDSRSYISback to top mRNA from alignment at C-tenellus_contig6848:84..6514- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig6848.1.1 ID=mRNA_C-tenellus_contig6848.1.1|Name=mRNA_C-tenellus_contig6848.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=6431bp|location=Sequence derived from alignment at C-tenellus_contig6848:84..6514- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig6848:84..6514- >mRNA_C-tenellus_contig6848.1.1 ID=mRNA_C-tenellus_contig6848.1.1|Name=mRNA_C-tenellus_contig6848.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=705bp|location=Sequence derived from alignment at C-tenellus_contig6848:84..6514- (Choristocarpus tenellus KU2346)back to top |