mRNA_C-tenellus_contig684.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig684.1.1
Unique NamemRNA_C-tenellus_contig684.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig684.1.1 vs. uniprot
Match: D7FTJ5_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.080e-12
Identity = 70/159 (44.03%), Postives = 84/159 (52.83%), Query Frame = 3 
Query:  321 RLKAIARLGEEDVEAGELEEAGSEDEYVPDREDGVLPDDHTL--DKQPDAVMLK------GTARRANL-----GPIGSTVRGQGPPPHKAAVRRGPVEVHAGKGAVSRRLPSEEQQVLRTKGRFKIIPQSKVPVSGAATVRKGKPPLTAKQKLLAKMKR 758
            RL+AIARLG+ D  AG+ ++  S DEY PD +D VLP+DH +  D+ P            G AR  N         G   R  G      A  RG V V A  G V RRL   +Q+ LR+KG FKI P SKVP        K K PLTAKQKL+AKM+R
Sbjct:  801 RLRAIARLGD-DAAAGDSDDDNSADEYKPDADDDVLPEDHKIYADELPRETKKGKSSPGVGGARPRNAWSGFGSGAGGGARAAG---SGTAGPRGKVGV-AVIGGVQRRLSVTKQEALRSKGMFKIAPPSKVPPKP-----KEKKPLTAKQKLMAKMRR 949
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BLAST of mRNA_C-tenellus_contig684.1.1 vs. uniprot
Match: A0A6H5JPR7_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.210e-10
Identity = 70/157 (44.59%), Postives = 82/157 (52.23%), Query Frame = 3 
Query:  321 RLKAIARLGEEDVEAGELEEAGSEDEYVPDREDG-VLPDDHTL--------DKQPDAVMLKGTARRANLGPIGSTVRGQGPPP--HKAAVRRGPVEVHAGKGAVSRRLPSEEQQVLRTKGRFKIIPQSKVPVSGAATVRKGKPPLTAKQKLLAKMKR 758
            RL+AIARLG+ D  AG+ E+  S DEY P      VLP+DH +         K+  +    G AR  N      T  G G       AA  RG V V A  G V RRL   +Q+ LR+KG FKI P SKVP        K K PLTAKQKLLAKM+R
Sbjct:  771 RLRAIARLGD-DAAAGDSEDDNSADEYKPXXXXXDVLPEDHKIYADELPRETKKGKSSSGVGGARPRNAWSGFGTGAGGGARAAGSSAAGVRGKVGV-AVIGGVQRRLSVTKQEALRSKGMFKIAPPSKVPPKP-----KEKKPLTAKQKLLAKMRR 920
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig684.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTJ5_ECTSI4.080e-1244.03JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JPR7_9PHAE6.210e-1044.59JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig684contigC-tenellus_contig684:12249..17306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTJ5
Preferred nameJHD1
PFAMsCupin_8,JmjC,PHD
Model size1488
Max annot lvl2759|Eukaryota
KEGG rclassRC00185,RC03038
KEGG koko:K10276,ko:K11445
KEGG ReactionR10056
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006482,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008214,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016491,GO:0016569,GO:0016570,GO:0016577,GO:0016705,GO:0016706,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032451,GO:0032452,GO:0032784,GO:0032786,GO:0032968,GO:0034243,GO:0035064,GO:0036211,GO:0042393,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051213,GO:0051252,GO:0051254,GO:0051276,GO:0051864,GO:0055114,GO:0060255,GO:0065007,GO:0070076,GO:0070544,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0140030,GO:0140034,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons3
Evalue1.29e-06
EggNOG OGsKOG1633@1|root,KOG1633@2759|Eukaryota
EC1.14.11.27
Descriptiondemethylase
Cds size294
COG categoryO
BRITEko00000,ko01000,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.1162221-UTR-C-tenellus_contig684:12248..129751680789996.1162221-UTR-C-tenellus_contig684:12248..12975Choristocarpus tenellus KU2346UTRC-tenellus_contig684 12249..12975 -
1680789996.1479864-UTR-C-tenellus_contig684:14178..142291680789996.1479864-UTR-C-tenellus_contig684:14178..14229Choristocarpus tenellus KU2346UTRC-tenellus_contig684 14179..14229 -
1680789996.1601136-UTR-C-tenellus_contig684:16890..173061680789996.1601136-UTR-C-tenellus_contig684:16890..17306Choristocarpus tenellus KU2346UTRC-tenellus_contig684 16891..17306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.1296353-CDS-C-tenellus_contig684:12975..130621680789996.1296353-CDS-C-tenellus_contig684:12975..13062Choristocarpus tenellus KU2346CDSC-tenellus_contig684 12976..13062 -
1680789996.1385293-CDS-C-tenellus_contig684:13971..141781680789996.1385293-CDS-C-tenellus_contig684:13971..14178Choristocarpus tenellus KU2346CDSC-tenellus_contig684 13972..14178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig684.1.1prot_C-tenellus_contig684.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig684 12976..14178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig684.1.1

>prot_C-tenellus_contig684.1.1 ID=prot_C-tenellus_contig684.1.1|Name=mRNA_C-tenellus_contig684.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=98bp
MLKGTARRANLGPIGSTVRGQGPPPHKAAVRRGPVEVHAGKGAVSRRLPS
EEQQVLRTKGRFKIIPQSKVPVSGAATVRKGKPPLTAKQKLLAKMKR*
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mRNA from alignment at C-tenellus_contig684:12249..17306-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig684.1.1 ID=mRNA_C-tenellus_contig684.1.1|Name=mRNA_C-tenellus_contig684.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5058bp|location=Sequence derived from alignment at C-tenellus_contig684:12249..17306- (Choristocarpus tenellus KU2346)
CACCAATATTGGTTCAGGAAGTTTCCGTTTTCTGCTGTACGATTAACTGG
GGGTTGTTTGAAGAGTTTGATGCTACAGTACTTACCTTTCGTCTGTATTA
ACTCCGTTAACTGTATCACAAGAACTGTCAGAGATTTCTTGTGGGGTTTA
ACTGTGCCACCAACTAAACTGCACCCCCATTTTTTGCTGTGGGTAATAGG
ACTGTGTCGGCCCCTTGAGACTTGTCTTATATTATGTATGTCTAGTGTGA
TTCTTCTAGGTCACATTTCTACCCTGATGGTTGTTTATCTGAGTCCTTGG
TGAAATAATGGTGTTGCCAAAGACTGAAAGCAATTGCAAGGTTGGGAGAA
GAAGATGTGGAAGCTGGGGAGCTGGAAGAGGCGGGCTCTGAGGATGAATA
CGTACCGGACAGAGAGGTAGGTGGAGAGGAGTGACAGTTATTAGCAACAA
GTATTTTATTAACAGTAGTTAAGTCTACTTCTGAGTGAGTGTACTGGGCT
TATAAGCTTATAATGTATTCTGTGTGCTGTTCATGATGCATTGTTACTGG
TTATTTCTCTGTATATCACTTCAAGTTTTGAATTTTGGGATGAGATACCT
CTGAGTGTTTACCTTCCAGTTTGTATGTACTTGATATTTCGGGGATATGA
TTTAGTATGTACTTACAGTGTGTACATTTGTGTCTGCATAAGTTCTACAC
GTTTTTTTTTTTTGCATTTAATGTCTTTTGCTCGTTCTGAAAGGAGATGC
TTTTTGGCAATCCTCATTAGTGTGGTTGGTTATATGGGAGGATACTACTC
CGAAGTATCTCTCTGTGAACCAGCTAGGAATAGCTATGTTTGTTAATATA
ACTATCTTGCAAATACATGATCAAGTGACCTTACTTTGCATGTATACTAA
GTATTTGCTCACTGTTCTGATGTAGCCTCTGATTTGAAGACCATTAGGGG
GGAAAAGATTGGTCGGAAGGTGTGCTAGTGTTGACTTGTTAAGGACAAGT
CTTCCTCTTTCACCATACACCCATCCGCAATATATACACGAGACACTTGT
ACTATTAGGAGTGACGTTGAAGTGGACACTCAGCGCAAGCAACAATCAGG
TGTTGCAGCTGTACTTGCAGAGTAGTAGCACCATACATCCAAATCCCAAC
TCTAGATAAAGTAACCATGGCCTGATCTGCCACTGCAACTGGATTCCTTC
AGCCTTCAGGATGGCGTCAGCCTTATTGGCACCCCAGGCAGCCTACCTAC
CATATATACACCTCCAGTGAGATGTTGTGTAGGAAGACAAGAAGCTTCAC
ATCGTTGGGATCCAGTTTATATTATATCTCTTAGCTGTAGCAATGTTCCA
AGGTGACGAGAGTGTATGTATGCACCTAGAGTCTGCCCGAGAAGCAGGGA
TGACCATGACACACACACACACACACACACACGGTAGTGGGATATCTTGG
TCTAACGTGAACAGGATGAAGCAGTCTCTCGCCATCACTTGAATGGGTCT
TTTGAAGCCACCTCTCCCATCTTAACACTAGGTTTTTGCTGATTTGACGG
AGTTATGCTCCAGTCACCTTGACTGCTCCATCTGTTCCCTCATCATGAAC
CCCTCTATCTTCCTCGGGTGGGGGCTATGACCTCTCAGCACTTGCAGTGT
GTGTGCGCTGTCCTCTATTGAGTTGAAGTATCTTAGAGGGTACGAGTTTT
TACCTGTTTGTCCATTTGGGGCTTGACTGCCCACATATTTTTAATGGCAT
TTTTCCTGCTCCGAAATATTTCTGAGTATAGGTAAAATGTATACGTTATG
AAAAGGAGTGTCCAGAACAAGGATATTGACATCTCCTAACAAACACGATA
GCCAAAATTACATCGAAACCGCAACATTGGATTTTGGCCCCCAAATGGAC
ACGGCTCTACCCTCTAAGATACTTTGACTGATTGCGTCAGCCGCATCTAT
CACATAGGGTCTTGATTGCTCAGCCTCCAGAGTACCCAGCACACTTCCAA
CTCTACACGCCTCCAAATTGCACTGTGCCCCTCTCCTCAGATGGTGTGTA
GAAAGCTTTTTGGTTCTACGGTCCACAGAAGGTTCACTTTTGTCAGGCAT
CTTGATTTTTATCGTACTCCCCATGTACCCAGCCGGTGGATACTCAAAAG
TCTCCAGAGTCAAGCCTCCGCAGGGTTGATACAGATAGATTCATGGCCAT
GGCAGTAAGTGTGTAGTGAGGTCTTTTTTTTAATTTTCAGTGGGTATTGT
ACCGTGCATGTGTGGTCCAAATAAACACAATAAACAGCCGACTGTTCCCC
CCAAAAGTGGCTGCAACACCAATTATTTTTATTTCATTAACTGGGCCAAT
TGAATCGTTGCGATTCGGGACTTCCCTGTCAAGTACATCTATTTTTGAAG
ACTAATTGAACCCATGGCTGGCGGGCACTAGGATGGTGTAAGTCATCATT
ATCTCCAATTACATTGATATAGCTTGCAAGATTTTGTGCTATTTTTCCTT
ACTGTACCACCTTTCTAATCATGTGACCTTTTTTTGTACCCTAAATCACA
TAGAGAGGTAGGCAGGGTTGCATTTTAAGGATCGCAAGAAAGGGTCAAAT
CATTCCATATTGTACAATTGCAGAAAGAGTATTTGCTGAATTGTGGTGTG
ACTTTGTGTGTGGAAAGGGGGAATGGAATATCAACTATGTATACACTATT
GTGCACATAAAGCAGTGAAAAAAGAGTGTATTGCACGGGGTAAGAAGGGT
GACTTCAAATGAAAAAAAAGAGAACAGAACCTGCCTGCCTCTAAATTGGT
TTGGCTCACTATTCTTGACAAGGGAGGAAATGAGCGAGGTTGATCATCGC
GATTGTCTGATACCTGATCCGATACCTCTAGCCACTACCATACTGATACC
ACTTATCCGCGTGTTGCATGTGCTGCAAGGGCCTGGTCATCTAATGAACA
CACTTGAGACCATCGCAAAAACAAAGCTCCAGTGGATGGTTTAGTGGATG
GTTTTGCCCACAAATGTTTATTGGTGTCAACCCCACCAATCCCTCTTTTG
CCTCTCCGTTCCCACCTCCACTCACAGGACGGTGTACTCCCTGATGACCA
TACGTTGGACAAGCAGCCTGATGCTGTCATGTTGAAGGGGACTGCTCGAA
GAGCGAACCTTGGTCCGATTGGCAGCACTGTTCGGGGACAAGGCCCCCCT
CCTCACAAGGCTGCTGTCCGTAGGGGTCCAGTAGAGGTCCACGCAGGAAA
GGGGGCAGTGTCAAGAAGGCTTCCGTCTGAAGAACAACAGGTTCTTCGTA
CGAAGGGTCGCTTCAAGATTATTCCTCAATCCAAGGTAGTGGTATTGTGT
GTAGGGGGGGGTGGGGAATGGGATTGGTGAGAGATGGTGATTGCAGCACT
TCAGGCAGGCGATCTTTTTGTTTGGTTGGGTGTCATTCATGAGGATTATT
GTCAGTAGTTTTTTTTTTTATCTTTTCCTGTTTGTTTTGTTTGCTAATGT
TGCCAACAAAGGCATTGGTTGTCGTGTTCATTGACCAGGATCACTACTTT
GCAATTTTAGTCAAGTGGTTTGACTTGAGCTTGACGAACGCCTATGGTAC
TCTGCCCTTGTTCAGTTCATGGTGGTGACTTCAATATGTGTGTGTTGTGG
TATGCAAGTAGTCAATTGCATTGAGGGCGGTCCAATTCATTGTTTATTTT
GTGCCGGTTGGTTTCTAGCCTACAGTCTTGGGGGTGAATTTGAGATTTTT
ACAGCTGAGTATACAAAAGTGAACCTTCCTCTTCATTGATGATTGGATGA
TATCGTCAAGAAATGATGCTTTTCAAGTCTTCGTGTGAAAGTAACCTCTG
CAACCGGCCTTGTGTCAAGTATGTGTAGGGAAGGTGTAAGGTAGAGAGTA
GGTATTCCATACCAGTTGTTTTGAGAAATCTCTAAAGAGGTTTATGGACT
GTGGGAAGATTGCATCTTGCCTCCCCCTTGTGTTGGTGGGGTCACAACCT
TACAATGTTTGGGCGATGACTTCATCAGCACATGCAAGTCATCTTTTAGG
ACATTTTTTTTATTGTTCGGGTTTATTTACCCCTTTTTGGTCAAGATTAC
ATTTTTTTCCAACTACATAATCATAGTCAGATAAATGCCCTGTCTTAGTG
ACCACCTCCCTACTATCTAAACTCGTCATTTCCCAATGTTCTGACCATCA
CACTCTCTTGCGGATGTTGACCCTTCCACTACCAAACAATTCAGGTTCCT
GTATCTGGCGCTGCAACTGTGCGGAAAGGTAAGCCCCCACTCACTGCCAA
GCAGAAGCTCCTTGCTAAGATGAAGCGCTGAAAGAGATGGGCAATTTTCC
ACAGAAATATGTTCTTCGAAACAGCATCCAGTGCTTCACAGTATATTTGC
AGTGGTTCAGATTGTTAAAACTATACATGACGTAAGGAAGAAGATTGGGA
CACTACCAGCAACTCACAACTCCAGAGTCCTACCGAGTAGAATTCCTTTT
TTTTCAATCAAGGGCAAGAATCGGGTTTACAAGTCAAAGATATCCAAGTT
TGGAGTCAAGTTTTCATCTATCTACATGTACTATTGTAATGTGCTGTAGT
ATATTTCTCAATACACAGAGCAGGTGTGGTCGTTTGAGGCAAACACACAC
CACACCACCGATCGACGGGCACCACTCCTCTATTGACTGTGAGTTACGTG
TGGTGCAACCTTGCAAGCGACTACGGATTCTCTACTGTTCTCTCCCGAAA
AGAGTCGGATTTCAGGAGTCATTCATGTGCATGGTTTGATCAACGACACT
GGAGGTTAGGGTTAGGGTTTGTAGTGTTAACACTTCTCCAGAGTTTTTGT
TTGTTAAGAGTTTCTCACTCAAGTAATAATAGCACGAGCTACAGATTTGT
TTGAAAAATCGAGTGTCCTTTTGTCCTGGCTGGTTCTCCAAGATAAGTTG
ATGAGCTGATCGATTTTGTTGCACAGTAAGGATGGGATTCGTTGTTGTAG
TGTACAACTTGATTGCAAAGATAGAACTAAAAATAAGCGTAAGTGCTTTC
TACTGTCT
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Coding sequence (CDS) from alignment at C-tenellus_contig684:12249..17306-

>mRNA_C-tenellus_contig684.1.1 ID=mRNA_C-tenellus_contig684.1.1|Name=mRNA_C-tenellus_contig684.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=294bp|location=Sequence derived from alignment at C-tenellus_contig684:12249..17306- (Choristocarpus tenellus KU2346)
ATGTTGAAGGGGACTGCTCGAAGAGCGAACCTTGGTCCGATTGGCAGCAC
TGTTCGGGGACAAGGCCCCCCTCCTCACAAGGCTGCTGTCCGTAGGGGTC
CAGTAGAGGTCCACGCAGGAAAGGGGGCAGTGTCAAGAAGGCTTCCGTCT
GAAGAACAACAGGTTCTTCGTACGAAGGGTCGCTTCAAGATTATTCCTCA
ATCCAAGGTTCCTGTATCTGGCGCTGCAACTGTGCGGAAAGGTAAGCCCC
CACTCACTGCCAAGCAGAAGCTCCTTGCTAAGATGAAGCGCTGA
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