mRNA_C-tenellus_contig681.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: D8LGK8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK8_ECTSI) HSP 1 Score: 376 bits (965), Expect = 1.610e-119 Identity = 224/464 (48.28%), Postives = 280/464 (60.34%), Query Frame = 2 Query: 272 VEKVDTADVVWNELRRLRDDIPPPLEDG-YPDDRACDAFHKADQAVAALCAIPREEMLGGFSKLVEGERLSDLLATLAGSTDHPALQHACLMVMCGVAGLNRAHDAICSRPDILKTLFSILAKPKQYRISSIGA--EEELEVNPAVGAIICLNSLLVSCGGLKAEDVTVWEELGALCAIASALEGHAAFLGGGDEDVLPAMLFGLATPLLRAHQPSDLL------------------------------------------ED--------------------RLRLSTAFLVLVADRREWVARSLAMAANTTQAD-PAGLAGQPQPVTVDNLLVSSLSLPGLFGAACQKTSVRLRARAVAAARECEREGSYSPGFAEALARCLGLGGQKAVRR-----AAQAALNEVRAKHPHVLCSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTAC 1450 V+ D A VW E+ +LRD+IPPP G YPDD+A AF AD AVA+LC +PRE+ML GF++LVEG RL+DLL L S HPALQH+CLMV+CGVA L +AH AI R D+L+ L LA P ++IS G+ E++L++NP+VG+ ICLNSLLVSCGGL + + VW+EL AL AI SALE H+ F GGGDEDVLPAMLFGLATPLL Q ED R RL+ AFL L+A+RREWVARSLAMAAN + D G A PVT++NLLV+SL+ L GA + T VRLRA+AVAAAR+CE +G+++PGF LAR LGLGGQ+ + R Q N+ A+ ++ C+ CG+ Q + G FK C+RCQ ++YCSGECQ AHWK HK C Sbjct: 12 VKSNDVAKAVWAEIVKLRDEIPPPPAGGLYPDDKAAKAFQAADAAVASLCGVPREQMLEGFTQLVEGSRLNDLLNALVASEGHPALQHSCLMVLCGVASLQQAHVAITERRDVLQALLKALASPTAHQISPEGSVGEDDLQINPSVGSAICLNSLLVSCGGLGEDTINVWQELDALSAITSALESHSVFEGGGDEDVLPAMLFGLATPLLTNFQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDATAGAGAVVDAETDKASRAARQRLAEAFLRLLAERREWVARSLAMAANASPTDLSGGGATAAAPVTINNLLVNSLAHADLLGAFTRLTPVRLRAQAVAAARQCETDGTFAPGFGAQLARLLGLGGQQELNRRMAGHTVQKIKNKEAARAANIKCAM--CGKRQGNASGGAKFKVCSRCQVAMYCSGECQKAHWKT-HKMEC 472
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: A0A6H5JNJ8_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNJ8_9PHAE) HSP 1 Score: 186 bits (471), Expect = 2.020e-48 Identity = 146/424 (34.43%), Postives = 203/424 (47.88%), Query Frame = 2 Query: 299 VWNELRRLRDDIPPPLEDG-------------YPDDRACDAFHKADQAVAALCAIPREEMLGGFSKLVEGERLSDLLATL--AGSTDHPALQHACLMVMCGVAGLNRAHDAICSRPDILKTLFSILAKPKQYRIS--SIGAEEELEVNPAVGAIICLNSLLVSCGGLKAEDVTVWEELGALCAIASALEGHAAFLGG----GDEDVLPAMLFGLATPLLRAHQPSDLLEDRLRLSTAFLVLVADRREWVARSLAMAANTTQADPAGLAGQPQPVTVDNLLVSSLSLPGLFGAACQKTSVRLRARAVAAARECEREGS------YSPGFAEALARCL--------GLGGQKAVRRAAQAALNEVR-----AKHPHVLCSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTAC 1450 +W ELR+LRDDIPPP+++ Y D A A ++ A+ A+PR++ L F +LV G RL +LL + S HPALQ+ACL+ + GVA L+ + +RPD++K L +++A P+Q ++ S GA VN A GA+ + L S G L+ +W ELGA+ A+AS LE HA F GD LP F +AT LL S ED+LRL A+L + + W+A A +LL + P ++ +LRA AVAAARECEREG+ + G A+ LA L GG+ RR A + V+ +PH S G+ A FKRC++C + YCS ECQ A WK H+ AC Sbjct: 11 IWQELRKLRDDIPPPVDNNTGSNKGDQESSTCYKDFAAFAACNEVRVAIGRSSALPRDQFLAIFRQLVAGPRLDELLELFKFSRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGAVTTITGLFTSNGPLEPPYAKLWVELGAVSALASCLENHAVFDRSNPVSGD---LPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTVFLEATRWIADEAA-----------------------DLLADFYTRPNWLKNIVERMPEKLRASAVAAARECEREGTGSGSSPWKGGKADRLALALLCGNAYNWDAGGELVGRRCAGPRCDRVQKCGHGGGNPHPAASEDEGGDG----AASVAFKRCSQCHAVGYCSRECQKAGWKK-HRKAC 403
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: A0A6H5KPW0_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPW0_9PHAE) HSP 1 Score: 157 bits (396), Expect = 6.910e-38 Identity = 133/423 (31.44%), Postives = 195/423 (46.10%), Query Frame = 2 Query: 287 TADVVWNELRRLRDDIPPPLEDGYPDDRACDAFHKADQAVAALCAIPREEMLGGFSKLVEGERLSDLLATLAGSTDHPALQHACLMVMCGVAGLNRAHDAICSRPDILKTLFSILAKPKQYRISSIGAEEELEVNPAVGAIICLNSLLVSCGGLKAEDVTVWEELGALCAIASALEGHAAFLGGGDEDVLPAMLFGLATPLLRAHQPSDLLEDRLRLSTAFLVLVADRREWVARSLAMAANTTQADPAGLAGQPQPVTVDNLLVSSLSLPGLFGAACQKTSVRLRARAVAAARECEREGSYSPGFA-------------------EALARCLGLG------------GQKAV---RRAAQAALNEV-RAKHPHVLCSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTAC 1450 TADV+W+++R+LRD P E YPD+ A A+ + RE +L ++K+ +G+RL DL++ GS +HPAL++ACL ++ V L + H + R D++KTL ++L +P+ IS + + PA A L+ L + GGLK W LGAL AI+SALE +AA + P ++F ++ LL + L+DR R++ L L +RR WVA + + G A P+ + N V G + +VRL A ++ G G A A A G+G G K V R L+++ R VLCS CG Q G FKRC RC++++YCS +CQVAHWK HK C Sbjct: 20 TADVLWDQIRKLRDCAPMEGE-FYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALRYACLELLGFVGQLKQTHRRLLCRMDVIKTLLTVLERPRIVPISPYCPSND--ICPAAEAARVLSVLCAAEGGLKGAHAEEWVSLGALGAISSALEFNAAIPDYFTD--FPMVMFMISGVLLSEAGHAVSLDDRARVAETSLGLWVERRRWVAPYAGSLGSLFEGPLRGEALMRAPLELRNQAVKQAEDFIAEGFSLGGWAVRLVAAILS--ESPADGGGGGDGVAGNXXXXXXXXXXXXXXVTDSASATAGGVGPTSGVSGPVRPSGGKQVPSTRGHLNVVLSDIKRGADAAVLCSRETCGRRQGDVKEG--FKRCGRCRTTVYCSKDCQVAHWKEKHKMEC 433
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: A0A196SGB7_BLAHN (MYND-type zinc finger protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SGB7_BLAHN) HSP 1 Score: 68.9 bits (167), Expect = 8.580e-10 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 2 Query: 1307 CSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTAC---GGK 1459 CSNP CG T+ + G FK+C+RC+++ YCS ECQ+ HWKNGHK C GGK Sbjct: 7 CSNPNCGNTESK---PGEFKKCSRCKTACYCSKECQLEHWKNGHKKECVPVGGK 57
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: D7FZ19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ19_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 5.270e-8 Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 2 Query: 287 TADVVWNELRRLRDDIPPPLEDGYPDDRACDAFHKADQAVAALCAIPREEMLGGFSKLVEGERLSDLLATLAGSTDHPALQ 529 TADV+W+++R+LRD P E YPD+ A A+ + RE +L ++K+ +G+RL DL++ GS +HPAL+ Sbjct: 20 TADVLWDQIRKLRDCAPMEGE-FYPDEEPAKALAAISVALKPWSSASRETLLSMYAKIADGKRLDDLISLFLGSQEHPALR 99
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: A0A836BVI8_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BVI8_9CHLO) HSP 1 Score: 67.8 bits (164), Expect = 5.410e-8 Identity = 41/99 (41.41%), Postives = 46/99 (46.46%), Query Frame = 2 Query: 1163 RECEREGSYSPGFAEALARCLGLGGQKAVRRAAQAALNEVRAKHPHVLCSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTACGGK 1459 RE +EG PG A R L KA E RA P C+NP C G +RCA CQ+ YC ECQ AHW+ GHK ACGGK Sbjct: 587 REAPKEGPLPPGIALLAERLAAL---KA----------EARALLP--ACANPACANLAGDSEAGLRLQRCAGCQAVSYCCKECQTAHWRAGHKAACGGK 670
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: A0A836BTC3_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BTC3_9CHLO) HSP 1 Score: 66.6 bits (161), Expect = 1.320e-7 Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 2 Query: 1268 ALNEVRAKHPHVLCSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTACGGK 1459 AL RA P +C+NP C G ++CARC+ + YC ECQ AHWK GHK ACGG+ Sbjct: 687 ALAAARALLP--VCANPACANLSGDSEAGLRLQQCARCKQAAYCCKECQTAHWKAGHKEACGGR 748
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: A0A835XMW0_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XMW0_9CHLO) HSP 1 Score: 60.1 bits (144), Expect = 7.530e-7 Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 2 Query: 1277 EVRAKHPHVLCSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTACG 1453 E R + CSNP C G ++C RC + YC ECQ AHW++GHK ACG Sbjct: 96 EARRRLGLPACSNPACANLAGDSEAGLRLQQCGRCGRASYCCRECQTAHWRSGHKEACG 154
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: A0A836BNU9_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BNU9_9CHLO) HSP 1 Score: 62.8 bits (151), Expect = 2.210e-6 Identity = 27/59 (45.76%), Postives = 31/59 (52.54%), Query Frame = 2 Query: 1307 CSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTACGGKA*RSSYRG 1483 CSNP C G +RC RC + YC +CQ AHWK GHK ACGG + S G Sbjct: 824 CSNPACANLAGDSEAGLRLQRCGRCGQASYCCRDCQTAHWKAGHKEACGGSSGGGSKAG 882
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Match: A0A835XR20_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XR20_9CHLO) HSP 1 Score: 62.8 bits (151), Expect = 2.240e-6 Identity = 27/60 (45.00%), Postives = 31/60 (51.67%), Query Frame = 2 Query: 1277 EVRAKHPHVLCSNPGCGETQDQYATGGLFKRCARCQSSLYCSGECQVAHWKNGHKTACGG 1456 E R + CSNP C G L + C RC+ YC ECQ AHW+ GHK ACGG Sbjct: 853 EARRRLGLPACSNPACVSLAGDSEAGRLLQLCGRCRREAYCCRECQTAHWRAGHKEACGG 912 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig681.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig681.1.1 >prot_C-tenellus_contig681.1.1 ID=prot_C-tenellus_contig681.1.1|Name=mRNA_C-tenellus_contig681.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=406bp MGSGDQDEVEKVDTADVVWNELRRLRDDIPPPLEDGYPDDRACDAFHKADback to top mRNA from alignment at C-tenellus_contig681:7031..10017+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig681.1.1 ID=mRNA_C-tenellus_contig681.1.1|Name=mRNA_C-tenellus_contig681.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2987bp|location=Sequence derived from alignment at C-tenellus_contig681:7031..10017+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig681:7031..10017+ >mRNA_C-tenellus_contig681.1.1 ID=mRNA_C-tenellus_contig681.1.1|Name=mRNA_C-tenellus_contig681.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1218bp|location=Sequence derived from alignment at C-tenellus_contig681:7031..10017+ (Choristocarpus tenellus KU2346)back to top |