mRNA_C-tenellus_contig6793.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6793.2.1
Unique NamemRNA_C-tenellus_contig6793.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6793.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6793contigC-tenellus_contig6793:3606..6137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2532
Hectar predicted targeting categoryother localisation
Exons1
Cds size1878
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789992.4542732-UTR-C-tenellus_contig6793:3605..36981680789992.4542732-UTR-C-tenellus_contig6793:3605..3698Choristocarpus tenellus KU2346UTRC-tenellus_contig6793 3606..3698 +
1680789992.4814873-UTR-C-tenellus_contig6793:5576..61371680789992.4814873-UTR-C-tenellus_contig6793:5576..6137Choristocarpus tenellus KU2346UTRC-tenellus_contig6793 5577..6137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789992.4669266-CDS-C-tenellus_contig6793:3698..55761680789992.4669266-CDS-C-tenellus_contig6793:3698..5576Choristocarpus tenellus KU2346CDSC-tenellus_contig6793 3699..5576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6793.2.1prot_C-tenellus_contig6793.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6793 3699..5576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6793.2.1

>prot_C-tenellus_contig6793.2.1 ID=prot_C-tenellus_contig6793.2.1|Name=mRNA_C-tenellus_contig6793.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=626bp
MQREQCHIVLGLVASSGFIRPGRNNNLQLTSLGVCNECRNRVGFHVGITL
KTPCEILASFGLLLESKRNRASRIPALRIHGLKWDLNELALSSNERLTVT
IVGLGNDIPQLTFGDRFHRVLDGVLCPSPLKQLVLGDHFNQAVYEVQWPT
GLQVLTFGDGFNQAVDRVKWPSGLRQLAFGSAFNQSVNGVVWPAELKQLT
FGFYFNQAVDGVQWPTGLQVLTFVGLFNQAVEGVQWPSGLRHIAFGPAFN
QPVNGVAWPAELKQLTFGFYFNQAVDEVQWPTGLQVMTFVGRFNQAVDRV
MWPCRLRQLDFGPEFNQAVNGVAWPAELKQLTFGHDFNQAVEEAQWPTGL
QVLRFGDDFNQAVDRVKWPSGLQQLTFGRRFNHPVNGVAWPADLKQLTLG
YGFNQAVDEVQWPTGLQVLRFGGGFNRAVDGMKWPSGLRQLAFGYRFNRP
VNGVAWPAELKQLTFGVEFNQAVDEVQWPTGLKMLTFGWEFNQAVDQVKW
PCGLQHLDFGRCFNQPVNGVVWPTELKQLSFGYYFNQAVDEVQWPTGLQV
LTFGHCFNQAVDGVKWPCGLQHLDFGRCFNQPVNGVVWPAELKQLTFGVE
FNQAVDEVQWPTGLKVTTFGNDLNM*
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mRNA from alignment at C-tenellus_contig6793:3606..6137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6793.2.1 ID=mRNA_C-tenellus_contig6793.2.1|Name=mRNA_C-tenellus_contig6793.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2532bp|location=Sequence derived from alignment at C-tenellus_contig6793:3606..6137+ (Choristocarpus tenellus KU2346)
AGTCAGAATACCATCTCAGAAACATCTACCATAACATGCATCCACTATGA
AAGCCATCCACCACCCGGTGTTGTCCCATAGCTTACTCGAGGTATGCAGA
GAGAACAGTGCCACATCGTGCTAGGCCTCGTGGCTAGTTCTGGCTTTATC
CGACCTGGGCGTAACAATAATCTTCAGTTGACCAGTCTAGGCGTTTGCAA
TGAGTGTCGCAACCGAGTGGGATTTCATGTCGGGATTACCTTGAAGACAC
CGTGTGAAATATTGGCAAGTTTTGGACTACTGTTGGAGAGCAAGAGAAAT
CGAGCATCACGTATTCCTGCTCTTCGTATCCATGGATTGAAGTGGGATCT
CAACGAACTGGCCTTGTCCTCCAACGAAAGGCTGACTGTCACCATTGTTG
GTTTGGGCAATGATATCCCCCAGCTGACCTTCGGCGATCGATTCCACAGG
GTACTAGATGGCGTATTATGTCCATCACCACTCAAACAGTTAGTCTTAGG
TGATCACTTCAACCAGGCAGTTTATGAGGTACAGTGGCCAACGGGGCTGC
AGGTGCTGACGTTCGGCGATGGATTCAATCAAGCAGTTGACCGAGTGAAG
TGGCCTTCTGGGCTTCGACAGCTTGCTTTTGGATCGGCGTTCAACCAGTC
AGTAAATGGAGTAGTGTGGCCCGCCGAGCTCAAGCAGCTGACCTTTGGAT
TTTACTTCAATCAGGCAGTGGATGGGGTACAGTGGCCAACGGGGCTGCAG
GTGCTGACATTCGTCGGTCTATTCAACCAAGCAGTTGAGGGAGTGCAGTG
GCCTTCTGGGCTTCGACATATTGCTTTTGGACCGGCGTTCAACCAGCCAG
TAAATGGAGTAGCATGGCCAGCTGAGCTCAAGCAGCTGACCTTTGGATTT
TACTTCAATCAGGCAGTGGATGAGGTACAGTGGCCAACGGGGCTGCAGGT
GATGACATTCGTCGGTCGATTCAATCAAGCAGTTGACCGAGTGATGTGGC
CTTGTAGACTGCGACAGCTTGATTTTGGCCCAGAGTTCAACCAGGCAGTA
AATGGAGTAGCATGGCCTGCAGAGCTCAAACAGCTGACCTTTGGCCATGA
CTTCAATCAGGCAGTGGAGGAGGCACAGTGGCCAACGGGGCTGCAGGTGC
TGAGGTTTGGCGATGACTTCAATCAAGCAGTTGACCGAGTGAAGTGGCCT
TCTGGGCTTCAACAGCTTACTTTTGGACGGAGGTTCAACCACCCAGTAAA
TGGAGTAGCATGGCCGGCTGATCTCAAGCAGCTGACCCTTGGATATGGCT
TCAATCAGGCAGTGGATGAGGTACAGTGGCCAACGGGGCTGCAGGTGCTG
AGGTTTGGCGGTGGTTTCAATCGAGCAGTTGATGGAATGAAGTGGCCTTC
TGGACTTCGACAGCTTGCTTTTGGATATAGGTTCAACCGGCCAGTAAATG
GAGTAGCGTGGCCTGCTGAGCTCAAGCAGCTGACCTTTGGAGTTGAGTTC
AATCAGGCAGTGGATGAGGTACAGTGGCCAACAGGGCTAAAGATGCTGAC
GTTTGGCTGGGAATTCAATCAAGCAGTTGACCAAGTGAAGTGGCCTTGTG
GGCTTCAACACCTTGATTTTGGAAGGTGTTTCAACCAGCCAGTAAATGGA
GTGGTGTGGCCCACTGAGCTCAAGCAGCTGTCCTTTGGATATTACTTCAA
TCAGGCAGTGGATGAGGTACAATGGCCAACGGGACTGCAGGTGCTGACAT
TCGGCCATTGTTTCAATCAAGCAGTTGATGGAGTGAAGTGGCCTTGTGGG
CTTCAACACCTTGATTTTGGAAGGTGTTTCAACCAGCCAGTAAATGGAGT
AGTGTGGCCTGCTGAGCTGAAGCAGCTGACCTTTGGAGTTGAGTTCAATC
AGGCAGTGGATGAGGTACAGTGGCCAACAGGGTTAAAGGTGACGACATTC
GGCAATGACTTGAATATGTAATTAAAATGAGTGGAGTGACCTTGTTAGCT
TCAACAGCTTGCTTTTGGATTGGAGTTCAACCAGGCAGTAAATGGAGTAG
CGTGGCCTGCTGAGCTCAAGCAGGTGACTTTTAGTAATGACTGCAATCAG
GCAGGGTATGGGTTTGGGTGGGCAGACTATAGAACAGAATACCTCAGGTG
ACCCTTGGATATGGCTTAGATCAGGAAGTGAATGAGGTTGGGTGGGCGGA
CTATTGTGCATAATACCATACGTATACATGGATTACAGTAGTATTTAACA
GAAATAATTGAGGTTAATGTTTCACATCTTAGATATTTATAGAGTATCAA
TTCTGGGTTTTGATGTCCACATGTTGAGACATCACATTTCTATATCTTGG
AGTATTCTAGAAACGTTGTAAGTGTTCAGTTTCAGTGATTCTTTCTGGAA
GCAACAGGTGCTAAGCCAAGCCCCACCATCTATAATAATGTCACTCTTCT
CTTTTCAACCACCTCATCACGTTCAGCAAGGGGGAATCATGTGATGCTTC
CATCTCTTTATTTTCTCGTCTTCCGTACTGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig6793:3606..6137+

>mRNA_C-tenellus_contig6793.2.1 ID=mRNA_C-tenellus_contig6793.2.1|Name=mRNA_C-tenellus_contig6793.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1878bp|location=Sequence derived from alignment at C-tenellus_contig6793:3606..6137+ (Choristocarpus tenellus KU2346)
ATGCAGAGAGAACAGTGCCACATCGTGCTAGGCCTCGTGGCTAGTTCTGG
CTTTATCCGACCTGGGCGTAACAATAATCTTCAGTTGACCAGTCTAGGCG
TTTGCAATGAGTGTCGCAACCGAGTGGGATTTCATGTCGGGATTACCTTG
AAGACACCGTGTGAAATATTGGCAAGTTTTGGACTACTGTTGGAGAGCAA
GAGAAATCGAGCATCACGTATTCCTGCTCTTCGTATCCATGGATTGAAGT
GGGATCTCAACGAACTGGCCTTGTCCTCCAACGAAAGGCTGACTGTCACC
ATTGTTGGTTTGGGCAATGATATCCCCCAGCTGACCTTCGGCGATCGATT
CCACAGGGTACTAGATGGCGTATTATGTCCATCACCACTCAAACAGTTAG
TCTTAGGTGATCACTTCAACCAGGCAGTTTATGAGGTACAGTGGCCAACG
GGGCTGCAGGTGCTGACGTTCGGCGATGGATTCAATCAAGCAGTTGACCG
AGTGAAGTGGCCTTCTGGGCTTCGACAGCTTGCTTTTGGATCGGCGTTCA
ACCAGTCAGTAAATGGAGTAGTGTGGCCCGCCGAGCTCAAGCAGCTGACC
TTTGGATTTTACTTCAATCAGGCAGTGGATGGGGTACAGTGGCCAACGGG
GCTGCAGGTGCTGACATTCGTCGGTCTATTCAACCAAGCAGTTGAGGGAG
TGCAGTGGCCTTCTGGGCTTCGACATATTGCTTTTGGACCGGCGTTCAAC
CAGCCAGTAAATGGAGTAGCATGGCCAGCTGAGCTCAAGCAGCTGACCTT
TGGATTTTACTTCAATCAGGCAGTGGATGAGGTACAGTGGCCAACGGGGC
TGCAGGTGATGACATTCGTCGGTCGATTCAATCAAGCAGTTGACCGAGTG
ATGTGGCCTTGTAGACTGCGACAGCTTGATTTTGGCCCAGAGTTCAACCA
GGCAGTAAATGGAGTAGCATGGCCTGCAGAGCTCAAACAGCTGACCTTTG
GCCATGACTTCAATCAGGCAGTGGAGGAGGCACAGTGGCCAACGGGGCTG
CAGGTGCTGAGGTTTGGCGATGACTTCAATCAAGCAGTTGACCGAGTGAA
GTGGCCTTCTGGGCTTCAACAGCTTACTTTTGGACGGAGGTTCAACCACC
CAGTAAATGGAGTAGCATGGCCGGCTGATCTCAAGCAGCTGACCCTTGGA
TATGGCTTCAATCAGGCAGTGGATGAGGTACAGTGGCCAACGGGGCTGCA
GGTGCTGAGGTTTGGCGGTGGTTTCAATCGAGCAGTTGATGGAATGAAGT
GGCCTTCTGGACTTCGACAGCTTGCTTTTGGATATAGGTTCAACCGGCCA
GTAAATGGAGTAGCGTGGCCTGCTGAGCTCAAGCAGCTGACCTTTGGAGT
TGAGTTCAATCAGGCAGTGGATGAGGTACAGTGGCCAACAGGGCTAAAGA
TGCTGACGTTTGGCTGGGAATTCAATCAAGCAGTTGACCAAGTGAAGTGG
CCTTGTGGGCTTCAACACCTTGATTTTGGAAGGTGTTTCAACCAGCCAGT
AAATGGAGTGGTGTGGCCCACTGAGCTCAAGCAGCTGTCCTTTGGATATT
ACTTCAATCAGGCAGTGGATGAGGTACAATGGCCAACGGGACTGCAGGTG
CTGACATTCGGCCATTGTTTCAATCAAGCAGTTGATGGAGTGAAGTGGCC
TTGTGGGCTTCAACACCTTGATTTTGGAAGGTGTTTCAACCAGCCAGTAA
ATGGAGTAGTGTGGCCTGCTGAGCTGAAGCAGCTGACCTTTGGAGTTGAG
TTCAATCAGGCAGTGGATGAGGTACAGTGGCCAACAGGGTTAAAGGTGAC
GACATTCGGCAATGACTTGAATATGTAA
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