mRNA_C-tenellus_contig678.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig678.4.1
Unique NamemRNA_C-tenellus_contig678.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: A0A6H5JNW3_9PHAE (PlsC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW3_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 1.270e-118
Identity = 178/265 (67.17%), Postives = 219/265 (82.64%), Query Frame = 1
Query:    4 WFLLFDFGMYAQEVKSF---RRVHLLKMLVFSSTWMLGSLMFSITTIPLYIIGHRDQAAEVAHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIFFSSTERAKVTIHKPISPGDPKFKDLVTLRKHCFDTVIGALPYSKAMLEEQ 789
            +FLLF   MY QE+KS+    RV   KML FS TWM GSL+ S   IP  ++G R++AAE  HY G++MGQ MFRI++ PP V+GLENLPPDGEKGMVYVSNHQ+ +DIA+FYYIG++RKFSWVSKS+VFL+PGVG LMK+A YVALTRGNR+SV+KMFDDC ER+ AGWSVMIFPQGTRRR K+LDFKDGAF LA+++ + VVPFTL LPE++F    +R K+T+H+P+ PGDP FKD+ TLRKHCFDTV+GALPY++ MLE+Q
Sbjct:   63 YFLLFAVAMYLQELKSYGGASRVSFPKMLAFSLTWMNGSLLCSALCIPDLLLGRRERAAEKVHYYGSIMGQLMFRILSKPPVVIGLENLPPDGEKGMVYVSNHQTSVDIALFYYIGAERKFSWVSKSTVFLIPGVGLLMKIAGYVALTRGNRDSVKKMFDDCKERLAAGWSVMIFPQGTRRRLKVLDFKDGAFQLAIDSNSVVVPFTLDLPENLFHGPRQRTKITVHEPVRPGDPAFKDVATLRKHCFDTVMGALPYAEGMLEDQ 327          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: D8LS64_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS64_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.030e-90
Identity = 135/184 (73.37%), Postives = 162/184 (88.04%), Query Frame = 1
Query:  199 MGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIFFSSTERAKVTIHKPISPGDPKFKDLVTLRKHCFDTVI 750
            MGQ MFRI++ PP V+GLENLP DGEKGMVYVSNHQ+ +DIA+FYYIG++RKFSWVSKS+VFL+PGVG LMK+A YVALTRGNR+SV+KMFDDC ER+ AGWSVMIFPQGTRRR K+LDFKDGAF LA+++ + VVPFTL LPE++F    +R K+T+H+PI PGDP FKD+ TLRKHCFDTV+
Sbjct:    1 MGQLMFRILSKPPVVIGLENLPSDGEKGMVYVSNHQTSVDIALFYYIGAERKFSWVSKSTVFLIPGVGLLMKIAGYVALTRGNRDSVKKMFDDCKERLAAGWSVMIFPQGTRRRLKVLDFKDGAFQLAIDSNSVVVPFTLDLPENLFHGPRQRTKITVHEPIRPGDPAFKDVATLRKHCFDTVM 184          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: A0A835YS94_9STRA (PlsC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS94_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.050e-65
Identity = 120/231 (51.95%), Postives = 161/231 (69.70%), Query Frame = 1
Query:  109 SLMFSITTIPLYIIGHRDQAAEVAHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTER-IDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIF-FSSTERAKVTIHKPISPGDPKFKDLVTLRKHCFDTVIGALPYSKAMLEEQQA 795
            S + S+  IPL +IG R +A E+ HY G V+ + + RI   P  + G+ENLPP  E   VYV+NHQS +DIA+F+ I  +R ++WVSK+SVFLVPGVG LM+LA YV+L RG++ S +KM +DC +  ++ GWSV+IFPQGTRRRHKILDFK GAF LA E    +VP T+ LPE ++     +R ++ IHKPI+P DP F+D   L  H F T++GAL Y  AML+ Q+A
Sbjct:    4 SFLGSLPAIPLLLIGQRKRARELTHYNGGVIARTLQRICFYPSVITGMENLPPP-ETACVYVANHQSTVDIAVFFAI--RRNYAWVSKASVFLVPGVGLLMRLAGYVSLQRGSKESGKKMMEDCRKDCLEKGWSVVIFPQGTRRRHKILDFKMGAFKLAQEARVPIVPVTIELPEKMYGIGCKDRPRLIIHKPIAPDDPLFQDRDALLAHTFGTIVGALSYGPAMLQRQRA 231          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: A0A7S2UZR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZR3_9STRA)

HSP 1 Score: 206 bits (525), Expect = 5.030e-57
Identity = 114/270 (42.22%), Postives = 169/270 (62.59%), Query Frame = 1
Query:    4 WFLLFDFGMYAQEVKSFRRVHLLKMLVFSSTWMLGSLMFSITTIPLYI-IGHR---DQAAEVAHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGE-KG--------MVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAG-----------WSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIFFSSTERA----KVTIHKPISPGDPKFKDLVTLRK 729
            W L++ F +Y QE+K++++VH+L+  +F+  W+ GS  F I   P ++ +G +    +   + H    V+ +WMFR     P+VVG+ENLP   E KG        ++YV NHQSM+DIA+FY++  +R+F+WVSKS+VF +PGVG +M +A+Y+ L RG   S+ KMF  C + + A            +SV IFPQGTRRR ++L FK GAF LA+ETG  VVP T+YLP DI+F+ + R     K+ +HKP+ P D  FK +  +R+
Sbjct:   21 WALVYVFAIYLQEMKTYKKVHVLRFSLFTLKWIYGSAYFVICLFPTWVSVGFQAFHPKVRALGHKKAGVLARWMFRSTFHEPEVVGMENLPAIPEDKGRGKFEHDAVIYVVNHQSMIDIALFYFV--ERRFAWVSKSTVFTIPGVGWIMTMAQYIPLERGKGESIAKMFGLCRKSLGASPEGDNTKKADSFSVTIFPQGTRRRFELLPFKAGAFQLAMETGCRVVPITMYLPPDIWFNPSARGGDKCKLIVHKPMDPKD--FKTMEAMRE 286          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: A0A7S3UUT6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUT6_HETAK)

HSP 1 Score: 179 bits (455), Expect = 7.220e-48
Identity = 98/235 (41.70%), Postives = 140/235 (59.57%), Query Frame = 1
Query:  106 GSLMFSITTIPLYIIG---HRDQAAEVAHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIFFSSTERA-KVTIHKPISPGDPKFKDLVTLRKHCFDTVIGALP--YSKAMLEEQQ 792
            GS +  I  +P+ I        +    A Y G  +G WMF+ I   P V G ENLP D +  +++  NHQSM+DIA+ Y++  + +F+WVSKS+ F +PG+G LM L++++ + RG++ S   MF  C + + +  SV IFPQGTR R  +  FK GAF+LA + G T+VP TLYLPEDI+      A ++TIH PI P      D   LR+ C + V+GALP  Y+    EE+Q
Sbjct:    2 GSFVCCILVLPVMIREMSFSNTKVRNAALYRGQQLGLWMFKSIFGQPQVAGKENLPKDQDTAVIFAVNHQSMIDIALLYFV--EHRFAWVSKSAAFSLPGIGSLMSLSQFIRIIRGDKKSAVNMFQGCVKTMASNASVAIFPQGTRDRRSVRPFKHGAFSLAADHGYTIVPCTLYLPEDIWSRPNGAACRLTIHPPIPPS----ADKEALRRKCAEVVLGALPEGYAPPFEEEEQ 230          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: W4G7D7_9STRA (PlsC domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7D7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.170e-44
Identity = 102/251 (40.64%), Postives = 150/251 (59.76%), Query Frame = 1
Query:   22 FGMYAQEVKSFRRVHLLKMLVFSSTWMLGSLMFSITTIPLYIIGHRDQAAEVAHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIF-FSSTERAKVTIHKPISPGDPKFKDLVTLRKHCFDTVIGALPYSK 771
            F +Y +E K F  +   K+L+F   W+L S +     +PL ++   ++   VAH    V+ + +  +   P  V G  N  PD E  M+ V+NHQ+M+DI   Y++G    FSWVSKS +FL+PG G LMKLA YV LTR N+ SV +MF+   +R   GWSV++FPQGTRRR + L FKDGAF LA+     V+P T+ +P+D++ ++   + K+ I KPI+  D   ++   L++  FD V+G LP  K
Sbjct:   19 FMIYYEEKKHFANIAHGKILLFGLFWVLVSALQFALVLPLKLVLAPNELHIVAHETCQVVARSLHVLFFGPVVVEGRPNANPD-EVYMI-VANHQTMMDITSLYFLGGN--FSWVSKSIIFLIPGAGWLMKLANYVPLTRKNKTSVLRMFELARDRFANGWSVVVFPQGTRRRTEFLPFKDGAFDLAIGAKVRVLPVTIIIPDDLWTWNRLGKVKLVIGKPIAIEDGMTRE--QLKQKAFDVVLGNLPKEK 263          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: A0A024U0I6_9STRA (PlsC domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0I6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 7.230e-43
Identity = 99/251 (39.44%), Postives = 150/251 (59.76%), Query Frame = 1
Query:   22 FGMYAQEVKSFRRVHLLKMLVFSSTWMLGSLMFSITTIPLYIIGHRDQAAEVAHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIF-FSSTERAKVTIHKPISPGDPKFKDLVTLRKHCFDTVIGALPYSK 771
            F +Y +E K F      K+L+F   W++ S +  +  +PL  +   ++   VAH    V+ + +  +   P  V G  N+ PD  K  + V+NHQ+M+DI   Y++G    FSWVSKS +FL+PG G LMKLA YV LTR N+ SV +MF+   +R   GWSV++FPQGTRRR + L FKDGAF LA++    ++P T+ +P+D++ ++   + K+ I KPI+ G+   KD   L++  +D V+  LP  K
Sbjct:   19 FMIYFEEKKLFVNFAHGKILLFGLFWVIVSWIEFMLILPLKFVVAPNELHIVAHETCMVVARTLHVLFFGPVVVEGRMNVNPD--KVYMIVANHQTMMDITSLYFLGGN--FSWVSKSIIFLIPGAGWLMKLANYVPLTRKNKTSVLRMFELAKDRFAHGWSVVVFPQGTRRRTEFLPFKDGAFDLAVDANVEILPVTIIIPDDLWTWNRLGKVKLVIGKPIAVGNAT-KD--ELKQKAYDVVLSNLPKQK 262          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: A0A7S3Y3G5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3G5_HETAK)

HSP 1 Score: 160 bits (406), Expect = 9.270e-41
Identity = 81/215 (37.67%), Postives = 135/215 (62.79%), Query Frame = 1
Query:    4 WFLLFDFGMYAQEVKSFRRVHLLKMLVFSSTWMLGSLMFSITTIPLYIIGHRDQAAEV---AHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIF 639
            W     + MY QE +S+  V   +   FS   + GS++  +  +P+ +     ++ +V   A      + + +FR     P V GLENLP +G++ +V+V NHQSM+D+A+ +++   R+F++VSK+  FL+PG G LM+L  +V L RGN+ S+ +MF+ C + +++  +++IFPQGTR+RH+ + FKDGAF+ A++   TVVP TL LP D++
Sbjct:   52 WVFFAAYMMYRQERRSYGEVGFARAFFFSLFCLYGSMICCVLVLPVIVFERGTKSVKVRNTAFQKNQQVSKKIFRFFFGDPVVQGLENLPQEGDRPVVFVMNHQSMVDVALSFFL--DRRFAFVSKAITFLLPGAGTLMRLCHFVPLKRGNKASILRMFEKCAQAMESDCNIVIFPQGTRKRHEWVPFKDGAFSFAVDNNYTVVPVTLALPADLW 264          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: A0A485LJH2_9STRA (Aste57867_21395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJH2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.780e-35
Identity = 89/248 (35.89%), Postives = 137/248 (55.24%), Query Frame = 1
Query:   31 YAQEVKSFRRVHLLKMLVFSSTWMLGSLMFSITTIPLYIIGHRDQAAEVAHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIF-FSSTERAKVTIHKPISPGDPKFKDLVTLRKHCFDTVIGALPYSK 771
            Y +E K F+     K+L+F   W+L S +                           + + +  +   P  V G E++ P+ E  M+ V+NHQ+M+DI   Y++     FSWVSKSS+FL+PG G +MKLA YV LTR +++SV KMF+   +R   GWSV IFPQGTR+R + L FKDGAF LA+     V+P T+ +P+D++ ++   + K+ +HKP+  G  K +    L++   D +  ++P  K
Sbjct:   22 YMEEKKLFKDAVDGKVLLFGLLWILVSAVEFXXXXXXXXXXXXXXXXXXXXXXXXXVARGLHVVFFGPVVVEGKEHMNPN-EVYMI-VANHQTMMDITALYHLDGN--FSWVSKSSIFLLPGAGWIMKLANYVPLTRKSKDSVLKMFEAAKDRFHNGWSVCIFPQGTRQRGEFLPFKDGAFDLAVTANVRVLPVTVIIPDDLWAWTRPGKVKLIVHKPLEKGLTKAE----LKQQSHDVIAASMPKLK 261          
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Match: A0A7S2SU51_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU51_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.210e-31
Identity = 75/208 (36.06%), Postives = 124/208 (59.62%), Query Frame = 1
Query:   31 YAQEVKSFRRVHLLKMLVFSSTWMLGSLMFSITTIPLYIIGHRDQAAEVAHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAMFYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDDCTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLPEDIFFSSTE 654
            +A+E + F  + L + +V    W+L + + +     L      D   E AH     +  ++ R      +V+G E+L     + +V V+NHQSM+D+A  + +    K +WV+K++VF +PGVG LM LA YV ++R ++ S+++M+  CT RI+  WS+++FPQGTR R KIL FKDGA+ LA + G  ++P T+ +P DI+ + T+
Sbjct:   55 WAEERRQFDDMSLFRTIVVVQVWILLTSIEAARLGALRTFFGVDVRLE-AHTSCRTIALFILRTFFDGYEVLGEEHLSAARGRPVVVVANHQSMMDVAAIFTL--HLKAAWVAKTTVFWIPGVGWLMALAGYVPVSRRDKASIKQMYSTCTTRIEEDWSLILFPQGTRNRRKILPFKDGAYNLASDLGVPILPVTICIPSDIWKNGTK 259          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig678.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNW3_9PHAE1.270e-11867.17PlsC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LS64_ECTSI1.030e-9073.371-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A835YS94_9STRA1.050e-6551.95PlsC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2UZR3_9STRA5.030e-5742.22Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3UUT6_HETAK7.220e-4841.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W4G7D7_9STRA3.170e-4440.64PlsC domain-containing protein n=5 Tax=Aphanomyces... [more]
A0A024U0I6_9STRA7.230e-4339.44PlsC domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A7S3Y3G5_HETAK9.270e-4137.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A485LJH2_9STRA2.780e-3535.89Aste57867_21395 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2SU51_9STRA4.210e-3136.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig678contigC-tenellus_contig678:10210..13128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS64
PFAMsAcyltransferase
Model size2448
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655,ko:K13509
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,ko04975,map00561,map00564,map01100,map01110,map04072,map04975
KEGG ModuleM00089
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0019637,GO:0022414,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090407,GO:1901576
Exons2
Evalue6.1e-98
EggNOG OGsCOG0204@1|root,KOG2848@2759|Eukaryota
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-12_004670.1
EC2.3.1.51
Description1-acylglycerol-3-phosphate O-acyltransferase activity
Cds size879
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789991.6792336-UTR-C-tenellus_contig678:10209..102361680789991.6792336-UTR-C-tenellus_contig678:10209..10236Choristocarpus tenellus KU2346UTRC-tenellus_contig678 10210..10236 +
1680789991.7227323-UTR-C-tenellus_contig678:11586..131281680789991.7227323-UTR-C-tenellus_contig678:11586..13128Choristocarpus tenellus KU2346UTRC-tenellus_contig678 11587..13128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789991.6906002-CDS-C-tenellus_contig678:10236..108121680789991.6906002-CDS-C-tenellus_contig678:10236..10812Choristocarpus tenellus KU2346CDSC-tenellus_contig678 10237..10812 +
1680789991.7096055-CDS-C-tenellus_contig678:11283..115861680789991.7096055-CDS-C-tenellus_contig678:11283..11586Choristocarpus tenellus KU2346CDSC-tenellus_contig678 11284..11586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig678.4.1prot_C-tenellus_contig678.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig678 10237..11586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig678.4.1

>prot_C-tenellus_contig678.4.1 ID=prot_C-tenellus_contig678.4.1|Name=mRNA_C-tenellus_contig678.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=293bp
MYAQEVKSFRRVHLLKMLVFSSTWMLGSLMFSITTIPLYIIGHRDQAAEV
AHYLGNVMGQWMFRIIAPPPDVVGLENLPPDGEKGMVYVSNHQSMLDIAM
FYYIGSQRKFSWVSKSSVFLVPGVGCLMKLAKYVALTRGNRNSVRKMFDD
CTERIDAGWSVMIFPQGTRRRHKILDFKDGAFTLALETGATVVPFTLYLP
EDIFFSSTERAKVTIHKPISPGDPKFKDLVTLRKHCFDTVIGALPYSKAM
LEEQQAARAEAEEAEETKCENASEAEVTALIGDDDGGSKKTN*
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mRNA from alignment at C-tenellus_contig678:10210..13128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig678.4.1 ID=mRNA_C-tenellus_contig678.4.1|Name=mRNA_C-tenellus_contig678.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2919bp|location=Sequence derived from alignment at C-tenellus_contig678:10210..13128+ (Choristocarpus tenellus KU2346)
TTTTGGTTCTTACTGTTTGACTTCGGCATGTACGCTCAGGAAGTCAAATC GTTTAGACGGGTCCACCTACTGAAGATGCTGGTTTTCTCATCCACCTGGA TGCTGGGCAGCTTGATGTTCTCGATCACGACCATTCCATTGTACATCATC GGCCACAGAGACCAAGCAGCTGAGGTGGCGCACTACCTGGGGAACGTGAT GGGGCAGTGGATGTTCCGTATCATTGCCCCACCTCCTGACGTTGTAGGAC TGGAGAACCTACCTCCAGATGGGGAAAAAGGAATGGTTTATGTGTCTAAC CACCAGTCAATGTTGGACATCGCTATGTTCTATTACATAGGTAGCCAGCG AAAATTCTCTTGGGTTAGCAAGAGCTCGGTCTTCCTTGTCCCTGGTGTAG GCTGCTTAATGAAGTTAGCCAAATATGTCGCCCTGACCCGGGGCAACCGA AACAGTGTGCGTAAAATGTTCGATGACTGCACAGAGCGTATTGATGCAGG CTGGTCGGTGATGATATTCCCGCAGGGAACGAGACGTCGGCACAAGATCC TCGACTTCAAAGATGGCGCCTTCACCCTTGCTTTGGAGACGGGTGCTACA GTGGTGAGAGTTCAGATGGCGAGCGAACACAGCCCCACCGGAATAGGCCC CCACTCTTTCAAGAGAAATAATGATATTAATCTCCAGTCCGCGGGTGTTG TGATGCTTACTGTATTGTATTGTCAGGTGACATCTTTCTGGGGCGGTTGA TTGGGGACATTAAACACGTTCATCTCGTTCGTTCCTTCGAAAATAGATTT GTAACTTAGCAGAATGCAAAGGCGAAGGCGAGGAGCAATGAAATATTTAA ATACTGTACTGAAGGGAAATTTCGTAGAGGCGTCTTGGACTGTGTTTGGC CTTGCACTTTAGTATCTTGTGACGCCCATTCCTTAGGGTGTGTTTTGAGA GTAGTGTTTAGCTGTACGTTTTGGCAGGGTGATGACACACGGGAGTACCA TAAAAAGCTGCCTAGCACTCGCGTTCTTACTCCTCCCCTGCCAAATGTCC TCTTCCTCCAATTGTATATGCAAGGTACCATTTACACTGTACCTCCCTGA GGATATATTTTTCTCATCCACAGAACGGGCCAAGGTAACAATTCATAAGC CTATCAGCCCTGGTGACCCAAAGTTCAAGGACCTAGTCACCCTCCGCAAG CACTGCTTTGACACAGTCATAGGGGCACTCCCATACAGCAAGGCTATGTT AGAGGAGCAGCAGGCAGCAAGAGCGGAAGCGGAGGAGGCAGAGGAAACCA AGTGTGAGAATGCGTCAGAGGCAGAAGTAACAGCACTGATTGGAGATGAT GATGGTGGTTCCAAAAAGACAAACTGACTGTGAGGGTACATTTTCGCAAT GATCTGCCTAAAGGTGATCTTTTGCTGGGAAAAATAGCCAATCTACTGTT ACATGTAATTCTCCAGTTTTGGTTAGGTGAGGGTGAACACAGGTGATACA GTCTGGTTGGGGTTTCTGTGCTGTCCTAGGTTTTCGTGGCATATCCTGCA ACTGGGGAGAAATATTCTGGGAGACTGAGGGGATGAATGCTGATGTTGAG AATGACTTTGACAAAGGAATGACACTCAATGAGCCTTTTTGGACAGTGGC ATTGGTATGATGGGAAAAGAGATTTCCTGATTTCTACATGCAACGGCCAA CCTATTTTGCTTTCATGGTAATTGTTGACAATATTGTAATGCAGGAGCTT GTCTCTCTTTAAATGTTCGGCAAAATGTTTGAGTGAAGTATGAGAGTTGG CCTGGGACTTTCTTGAGTTCCCCCTCTCTCGCTACATGTTCCTCATTTGT TATCCTTTGACTGTGGGAGAGAGTATTGGCTGCTGTTGACCAGAGCAACT GTGTAATATTTGGTTGTAGGATGTTGCAGGATGAGTGAGGAAAAAATAAG CTCGATGTGATGAATATACTTAGACGCAGGACATTGTTCTTGTTCTAGAG ACCACACACTACCGGACTGTCTGCAGCTATTTCAACAGCTGCTTTGTCAC ATGTAAGGAGTGCAGTTTGGGTCGAGTTCCATGGGTAACTGAGTACTGCT TGTGACTGGCTTGTGTCATCATGTGTGTTGATGACCAACTGTTCTGCATG AGGGCTTTTGTACAAATTTGGTTGGCTGTTGTATCCTTGTCTGTGTGCGA AGTACTTTGTGCGAAGTACTTTACGACCTACCAGTGACCGTCACTGAGTG GCAAAGATGCTACTGGGGTTTGTGGAGTTGTCATGCCCGACAAGATGTTG GTTCCTTACATCTGTGTGGTGATTGGGCAGTGTGTTCCATATTTTCATCC TTCCCACAAATGTGTGGTAATCCACACCATGGCAGACACCTCTAGTTTAG AGGAGGTATTGTAGCGGGTTTTTTGGGGGACTTTCATGGTACGAGAGAAT GTTTTCCAGGTTACTTGAACATTTTTTTTGTTTGTCTTATCTTTGTAATC TGTCAACTGACGGAGCAAGTCCTCAATCCTGCTTTTGTAGGTACTGTGGC GCAGGTGGGGTGAATGAGGTCTGGGCGTTGGTTGGATTGCTATGCCAGTT GTGGAACCGGACTGATGTGGATATCATGTATTTCAAGAGTTGTCATCACA TGGCTTCACGTGATACCACTGCAGAGTTGCAGATCAATACTGGGTAGATA AATCTCCTGGTCTCATTATTTACGTAAGTAGTAGATGGTTATCTTAGACT TTATCTAAAAAACACATATCATCAAAAAATGTCCCTCTAACCATCGATAG GAGCAGGAACAGTGAAGGAAATCCTCTCCTAGACATGCAGTAAGAGTCAT CGATACCTTTAGTTTCACTGACACACACCAATGGAGTGAAGCAGGAGTAG AAATCCCCCCATCCGCATC
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Coding sequence (CDS) from alignment at C-tenellus_contig678:10210..13128+

>mRNA_C-tenellus_contig678.4.1 ID=mRNA_C-tenellus_contig678.4.1|Name=mRNA_C-tenellus_contig678.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=879bp|location=Sequence derived from alignment at C-tenellus_contig678:10210..13128+ (Choristocarpus tenellus KU2346)
ATGTACGCTCAGGAAGTCAAATCGTTTAGACGGGTCCACCTACTGAAGAT
GCTGGTTTTCTCATCCACCTGGATGCTGGGCAGCTTGATGTTCTCGATCA
CGACCATTCCATTGTACATCATCGGCCACAGAGACCAAGCAGCTGAGGTG
GCGCACTACCTGGGGAACGTGATGGGGCAGTGGATGTTCCGTATCATTGC
CCCACCTCCTGACGTTGTAGGACTGGAGAACCTACCTCCAGATGGGGAAA
AAGGAATGGTTTATGTGTCTAACCACCAGTCAATGTTGGACATCGCTATG
TTCTATTACATAGGTAGCCAGCGAAAATTCTCTTGGGTTAGCAAGAGCTC
GGTCTTCCTTGTCCCTGGTGTAGGCTGCTTAATGAAGTTAGCCAAATATG
TCGCCCTGACCCGGGGCAACCGAAACAGTGTGCGTAAAATGTTCGATGAC
TGCACAGAGCGTATTGATGCAGGCTGGTCGGTGATGATATTCCCGCAGGG
AACGAGACGTCGGCACAAGATCCTCGACTTCAAAGATGGCGCCTTCACCC
TTGCTTTGGAGACGGGTGCTACAGTGGTACCATTTACACTGTACCTCCCT
GAGGATATATTTTTCTCATCCACAGAACGGGCCAAGGTAACAATTCATAA
GCCTATCAGCCCTGGTGACCCAAAGTTCAAGGACCTAGTCACCCTCCGCA
AGCACTGCTTTGACACAGTCATAGGGGCACTCCCATACAGCAAGGCTATG
TTAGAGGAGCAGCAGGCAGCAAGAGCGGAAGCGGAGGAGGCAGAGGAAAC
CAAGTGTGAGAATGCGTCAGAGGCAGAAGTAACAGCACTGATTGGAGATG
ATGATGGTGGTTCCAAAAAGACAAACTGA
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