mRNA_C-tenellus_contig6776.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6776.2.1
Unique NamemRNA_C-tenellus_contig6776.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6776.2.1 vs. uniprot
Match: A0A8H3YH63_9TREE (Uncharacterized protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3YH63_9TREE)

HSP 1 Score: 53.5 bits (127), Expect = 1.140e-5
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:  142 GRQVEILCDSGASVHLTLDREDLVSNQPTKHTCTFGNNGKLEAKETGDMVPMVTDKDGKPTRVVLKDVLWVPGLPCRILSTGSI 393
            GR+ E   DSGAS HLT D+E LV+  P +   T G+  +L +   G +   VTD       + + + L+VPGL C +LS   +
Sbjct:  305 GRKTEFYLDSGASGHLTCDKELLVNPVPYRSAVTIGDGSQLYSTPKGSI--RVTDS------IKVDNALYVPGLACNLLSVREL 380
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6776.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8H3YH63_9TREE1.140e-536.90Uncharacterized protein n=1 Tax=Naganishia liquefa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6776contigC-tenellus_contig6776:6134..6529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra85884
Model size396
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.61e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3Q9XS@4776|Peronosporales
DescriptionDNA binding
Cds size396
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789991.4154441-CDS-C-tenellus_contig6776:6133..65291680789991.4154441-CDS-C-tenellus_contig6776:6133..6529Choristocarpus tenellus KU2346CDSC-tenellus_contig6776 6134..6529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6776.2.1prot_C-tenellus_contig6776.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6776 6134..6529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6776.2.1

>prot_C-tenellus_contig6776.2.1 ID=prot_C-tenellus_contig6776.2.1|Name=mRNA_C-tenellus_contig6776.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=132bp
MAPGTFPPPPTSGSSNKVDGNQARSFSSFKVTADEEVNKRAVINSSIGRQ
VEILCDSGASVHLTLDREDLVSNQPTKHTCTFGNNGKLEAKETGDMVPMV
TDKDGKPTRVVLKDVLWVPGLPCRILSTGSI*
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mRNA from alignment at C-tenellus_contig6776:6134..6529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6776.2.1 ID=mRNA_C-tenellus_contig6776.2.1|Name=mRNA_C-tenellus_contig6776.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=396bp|location=Sequence derived from alignment at C-tenellus_contig6776:6134..6529- (Choristocarpus tenellus KU2346)
ATGGCACCCGGAACATTTCCGCCACCTCCAACTAGTGGGAGCAGCAACAA
AGTCGACGGAAACCAAGCGCGCTCCTTCTCCAGTTTCAAAGTGACAGCAG
ACGAGGAGGTTAACAAAAGGGCGGTGATCAACTCCTCCATTGGAAGACAA
GTCGAGATATTGTGTGACTCTGGAGCAAGCGTACATCTTACACTTGATCG
TGAAGACCTTGTAAGCAATCAGCCTACCAAACACACATGCACCTTTGGAA
ACAATGGGAAATTGGAAGCGAAGGAAACCGGGGATATGGTTCCAATGGTG
ACGGACAAGGACGGCAAACCAACAAGAGTGGTTCTGAAGGATGTTCTATG
GGTCCCAGGTCTGCCATGCCGCATATTGAGTACTGGAAGTATATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig6776:6134..6529-

>mRNA_C-tenellus_contig6776.2.1 ID=mRNA_C-tenellus_contig6776.2.1|Name=mRNA_C-tenellus_contig6776.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=396bp|location=Sequence derived from alignment at C-tenellus_contig6776:6134..6529- (Choristocarpus tenellus KU2346)
ATGGCACCCGGAACATTTCCGCCACCTCCAACTAGTGGGAGCAGCAACAA
AGTCGACGGAAACCAAGCGCGCTCCTTCTCCAGTTTCAAAGTGACAGCAG
ACGAGGAGGTTAACAAAAGGGCGGTGATCAACTCCTCCATTGGAAGACAA
GTCGAGATATTGTGTGACTCTGGAGCAAGCGTACATCTTACACTTGATCG
TGAAGACCTTGTAAGCAATCAGCCTACCAAACACACATGCACCTTTGGAA
ACAATGGGAAATTGGAAGCGAAGGAAACCGGGGATATGGTTCCAATGGTG
ACGGACAAGGACGGCAAACCAACAAGAGTGGTTCTGAAGGATGTTCTATG
GGTCCCAGGTCTGCCATGCCGCATATTGAGTACTGGAAGTATATGA
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