mRNA_C-tenellus_contig677.7.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI) HSP 1 Score: 367 bits (941), Expect = 7.180e-123 Identity = 182/327 (55.66%), Postives = 231/327 (70.64%), Query Frame = 3 Query: 150 LDVLYFDEQVVVLNKPSGLRTVPGNQ-GEGLDSKAQVEWHRGTKRSRQEFWTQVVHDTCTSLLADTNSSTSVPVGEGEEGRFSNPPNGNEQIATCLRRLAGDHNVPRRKTKFLKYTSSSLGLQGKEGTDMAEKLWQTMSSNLNHEAGPGCDCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 +DV++ D +VVLNKP+GLRTVPG G +++ VEWH GTKR RQEFWT VVH C SLL D + EGEE + LRRL ++NVPR+++KF YT+ +LGL+G+EG ++ +LW T+ +L E GPG DCLL RV RWPEARHVHRLDQ TSG+VV+ALT EAA+++ +QFRERV +K YTAVLEGRM + GEV AK+RPD ++RP+Q+ E+ G A T W+ +KR+ + T VDF P TGRTHQIRMHA+ LGHP++GD+LYGT EG A S RL+LHAR +SF HP+TGE V FE P PF Sbjct: 24 VDVIFSDPDIVVLNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLLNDEKT-------EGEE-----------EFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGTAKSERLLLHARRISFPHPRTGETVEFECPPPF 332
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A2D5B3Y4_9BACT (RNA pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5B3Y4_9BACT) HSP 1 Score: 177 bits (448), Expect = 4.430e-50 Identity = 86/177 (48.59%), Postives = 123/177 (69.49%), Query Frame = 3 Query: 597 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 DCL +R +P AR VHRLD+ TSGV+V+A A+ ++LS+QF +R K Y AV+ GR+ D+G + A MR DL+D PRQ++D++ G+SA T ++V++R + TR++ P TGR+HQ+R+H +++GHPILGD LY T E +MS RL+LHA L+ HP TG+ V F P PF Sbjct: 53 DCLASRAEAAFPGARIVHRLDRDTSGVIVMARDADTHRELSRQFHDREVDKQYEAVVGGRL--AVDDGVIDAPMRKDLDDPPRQIIDDEQGRSAKTGFRVIERMDDRTRMELSPVTGRSHQLRVHMMSIGHPILGDDLYATPELLSMSRRLLLHATLLTITHPATGKPVTFHDPCPF 227
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: UPI000833CE2D (pseudouridine synthase n=1 Tax=Neptuniibacter marinus TaxID=1806670 RepID=UPI000833CE2D) HSP 1 Score: 176 bits (445), Expect = 6.960e-50 Identity = 94/179 (52.51%), Postives = 119/179 (66.48%), Query Frame = 3 Query: 597 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREAN--CTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 DCL RV +P AR VHRLD TSGV+V+ALT EA + L++ F+ER T K Y A++ G + EG V +R D E+RP Q++D + GK+A T WKVL +E++ TRV+ P TGR+HQ+R+H A+GHPILGD Y EGQA S RL+LHA LSF HP TGE V F P PF Sbjct: 32 DCLWRRVQTIFPTARVVHRLDYATSGVMVLALTLEAQRSLNRSFQERQTHKRYQAIISGTPEQS--EGSVELPLRCDWENRPLQIVDFEQGKNALTHWKVLAKESSEQDTRVELTPITGRSHQLRVHMQAMGHPILGDRFYADTEGQAKSDRLLLHAEQLSFPHPITGEFVEFFVPCPF 208
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A3N1NVW8_9GAMM (Pseudouridine synthase n=2 Tax=Marinimicrobium TaxID=359337 RepID=A0A3N1NVW8_9GAMM) HSP 1 Score: 175 bits (444), Expect = 1.070e-49 Identity = 92/177 (51.98%), Postives = 120/177 (67.80%), Query Frame = 3 Query: 597 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 DCL+NR+ +P AR VHRLDQ TSG+VV+ L EA K L++QF +R KCYTAV+ G M + + GEV + D +RPRQ +D + GK+A T+++VL+R A+ T V +P TGR+HQ+R+H ALGHPILGD LY T A S RL+LHA ++ F HPQTG V ESP F Sbjct: 37 DCLINRLLVPYPNARIVHRLDQATSGLVVIPLGYEAQKHLARQFEQRSVHKCYTAVVGGVMAD--EAGEVDLPLICDWPNRPRQKVDYNDGKAALTRYRVLQRSADATWVALEPVTGRSHQLRVHMQALGHPILGDNLYATPAYLAASDRLLLHATTIEFTHPQTGSPVHCESPPVF 211
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A2E2KKK0_9GAMM (RNA pseudouridine synthase n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E2KKK0_9GAMM) HSP 1 Score: 174 bits (440), Expect = 3.630e-49 Identity = 85/177 (48.02%), Postives = 117/177 (66.10%), Query Frame = 3 Query: 597 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 DCL RV +P AR VHRLD TSG++V+ALT EA +D+S+ F+ER T K Y A++ G+ E +G V + D E+RP Q++D + GK+A T WK ++ TRV+ P TGR+HQ+R+H A+GHPI+GD Y + +A+S RL+LHA LSF HP+TG+ V F P PF Sbjct: 32 DCLWRRVQAEFPTARVVHRLDYATSGLMVLALTLEAQRDISRSFQERKTGKLYQAIISGKPSE--KQGSVDLPLICDWENRPLQIVDHEHGKNALTHWKATGEDSRGTRVELTPITGRSHQLRVHMQAMGHPIIGDRFYADEDSKALSDRLLLHAERLSFPHPETGKVVEFTVPCPF 206
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A1N6RKQ0_9GAMM (Ribosomal large subunit pseudouridine synthase A n=2 Tax=Marinobacterium stanieri TaxID=49186 RepID=A0A1N6RKQ0_9GAMM) HSP 1 Score: 173 bits (439), Expect = 5.440e-49 Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 3 Query: 597 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREA--NCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 DCL RV + +P AR VHRLDQ TSG++V+AL+A++ + LS QF+ER T K Y+AV+EG M + D+G V +R D E RP Q++D D GK A+T+W R+ N +RV P TGR+HQ+R+H +A+GHPILGD Y E SRL LHA L+F HP+TGE++ ESP PF Sbjct: 32 DCLWRRVQQHFPTARIVHRLDQATSGILVLALSADSHRHLSMQFQERGTDKRYSAVVEGLMEQ--DQGCVELPLRCDWERRPLQMVDHDKGKQATTEWVCTLRDPGLNTSRVTLYPITGRSHQLRVHMMAIGHPILGDRFYAQPEQAERYSRLHLHAEMLAFDHPETGERLELESPCPF 208
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A1H9I0B1_9GAMM (Pseudouridine synthase n=1 Tax=Amphritea atlantica TaxID=355243 RepID=A0A1H9I0B1_9GAMM) HSP 1 Score: 172 bits (437), Expect = 1.220e-48 Identity = 87/177 (49.15%), Postives = 120/177 (67.80%), Query Frame = 3 Query: 597 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 DCL RV + +P AR VHRLD TSGV+V+AL+A + + LS QF+ER T K Y A++ GR+ + + G V +R D E+RP Q++D GKSA T W+++++ + +RV+ P TGR+HQ+R+H LGHPILGD Y T S RL+LHA SLSF+HP +GE + F SP+PF Sbjct: 38 DCLWRRVQQHYPTARIVHRLDYATSGVMVLALSATSHRHLSIQFQERKTDKSYQAIVAGRLAKNS--GTVNQPLRCDWENRPLQIIDHQQGKSAQTHWRLIEQLDDASRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPRQIERSERLLLHAHSLSFSHPVSGEPLSFSSPMPF 212
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A285SNU8_9HYPH (Pseudouridine synthase n=4 Tax=Stappia indica TaxID=538381 RepID=A0A285SNU8_9HYPH) HSP 1 Score: 172 bits (437), Expect = 2.290e-48 Identity = 87/177 (49.15%), Postives = 114/177 (64.41%), Query Frame = 3 Query: 597 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 DC+ R P++R VHRLD TSGV+V+A+ A + L QF R AK Y A + GRM E D G V +R D +RPRQ++D+ G+SA T W+VL+RE + TRV +P TGR+HQ+R+H A+GHPILGD LYG E Q ++RL LHA+SL+ HP GE F +P PF Sbjct: 59 DCVAARALSLHPQSRIVHRLDMDTSGVLVLAMNPAAHRHLGLQFERRHVAKTYLARVAGRMAE--DSGTVDLPLRCDWPNRPRQMVDQQEGRSAITHWRVLERERDATRVQLEPVTGRSHQLRVHMCAIGHPILGDPLYGDSESQQAAARLQLHAKSLTLHHPSGGEHKTFSAPSPF 233
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: A0A2E5DZI3_9BACT (RNA pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E5DZI3_9BACT) HSP 1 Score: 172 bits (435), Expect = 2.420e-48 Identity = 81/177 (45.76%), Postives = 121/177 (68.36%), Query Frame = 3 Query: 597 DCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 DCL+ R +P AR VHRLD+ TSG++V+A A+ ++LS+QF++R K Y A+ G + DEG + A +R D+++ PRQ++D+ G+ + T+W V++R +CTR+ P TGR+HQ+R+H ++GHPILGD LY E +A RLMLHA L F HP +G++++FESP PF Sbjct: 38 DCLVARAQADFPGARIVHRLDRDTSGLIVLARDADTHRELSRQFQDREVEKTYEAIAGGIL--AIDEGMIDAAIRKDMDNPPRQMIDDVQGRPSKTRWMVMERGDDCTRIQLFPLTGRSHQLRLHLQSIGHPILGDDLYAPDEMRARVDRLMLHATILEFTHPSSGKRLIFESPAPF 212
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Match: UPI001AE8CCD4 (RluA family pseudouridine synthase n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001AE8CCD4) HSP 1 Score: 171 bits (434), Expect = 3.410e-48 Identity = 91/182 (50.00%), Postives = 119/182 (65.38%), Query Frame = 3 Query: 585 GP-GCDCLLNRVFKRWPEARHVHRLDQGTSGVVVVALTAEAAKDLSQQFRERVTAKCYTAVLEGRMREGTDEGEVVAKMRPDLEDRPRQVLDEDGGKSASTKWKVLKREANCTRVDFKPATGRTHQIRMHALALGHPILGDTLYGTREGQAMSSRLMLHARSLSFAHPQTGEKVVFESPIPF 1127 GP G DCL+ RV + +A VHRLD TSGV+V+A AEA + LS+ F +R+T K Y AV+ G M TD GE+ + D +RP+Q++D GKS+ T++ VL R TRV +P TGR+HQ+R+H LALGHPI+GD LY E A+S RL+LHA L HP TGE++ F SP PF Sbjct: 33 GPAGEDCLIRRVQAEYADALIVHRLDMATSGVMVMARGAEAHRTLSKAFADRLTDKAYVAVVAGEM--ATDAGEIDLPLVTDWPNRPKQIVDHKIGKSSLTRYHVLARGEGTTRVALEPVTGRSHQLRVHMLALGHPIVGDALYAPAEIVALSPRLLLHAERLEVPHPVTGERMAFVSPAPF 212 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig677.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig677.7.1 >prot_C-tenellus_contig677.7.1 ID=prot_C-tenellus_contig677.7.1|Name=mRNA_C-tenellus_contig677.7.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=350bp MACSEEGPKERLCMSRRVGEDAALDVLYFDEQVVVLNKPSGLRTVPGNQGback to top mRNA from alignment at C-tenellus_contig677:5419..9231- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig677.7.1 ID=mRNA_C-tenellus_contig677.7.1|Name=mRNA_C-tenellus_contig677.7.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3813bp|location=Sequence derived from alignment at C-tenellus_contig677:5419..9231- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig677:5419..9231- >mRNA_C-tenellus_contig677.7.1 ID=mRNA_C-tenellus_contig677.7.1|Name=mRNA_C-tenellus_contig677.7.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1050bp|location=Sequence derived from alignment at C-tenellus_contig677:5419..9231- (Choristocarpus tenellus KU2346)back to top |