mRNA_C-tenellus_contig677.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig677.6.1
Unique NamemRNA_C-tenellus_contig677.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig677.6.1 vs. uniprot
Match: W7TN91_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN91_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.990e-16
Identity = 85/291 (29.21%), Postives = 142/291 (48.80%), Query Frame = 3 
Query:   87 AGIVRSLARQARSLSRLLAGADIGSLPRRVPARRLGKLTDQLNYVQEFYRNIFEKGWNKDTR--------QRSNSGGVS----QRIWRVTKQSLSPFM-KNTALGSALFSTYQVVDDKL-----IIKIVNCGEIQHMNVGN--EVGLKSAIAAFAGCAAGAVHGTLDIAYNAMFSNRSVMHV-----KGTLVSHTLVHGTLFSTFQLAKFGALAVGGKDLSQWGGAVAVGVAGAVAGVAQETMAFYSCRLEKHGLRRGIAAAWKLPLPSWRGVLAAVPASTLGFLAFEYGR 884
            AG++R+  R + ++ R +     GS PRRVP + + K+TDQ++   + Y ++F+    + TR        Q   S G +     +++  T +S  P M K+  LG+A+F  Y+   D L     + K V+ GE       +   + +       +G  AG  HG L + +       +  HV      GT ++H+L H +LF +F++ K   LA+      +  G   VG AG +AG+ +ET++  +   EK G+    AA  +  LP  R + +A   ++LGFLA+EYGR
Sbjct:   99 AGVIRAAVRSSINIYRSIL---FGSFPRRVPLKTVSKITDQVSTAWDAY-SVFKGSHKEATRDIEVQNRPQHKESLGTAGLHKAQLFGQTLRSAVPHMVKSGFLGTAVFEMYETSKDTLDNALGLDKDVD-GEASFSTSRDVFSLSMMGITGLISGGLAGTCHGLLYVGWEHARRLINAQHVVANVWTGTALAHSLAHASLFGSFEVLKDALLAITHARHEEPLGVFVVGAAGGLAGLVEETVSHLTPHWEKEGVSSLRAAFKRNGLPRLRVISSAALPTSLGFLAWEYGR 384
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BLAST of mRNA_C-tenellus_contig677.6.1 vs. uniprot
Match: A0A024UEM2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEM2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.840e-9
Identity = 74/295 (25.08%), Postives = 135/295 (45.76%), Query Frame = 3 
Query:   84 VAGIVRSLARQARSLSRLLAGADIGSLPR--RVPARRLGKLTDQLNYVQEFYRNIFEKGWNKDTRQRSNSGGVSQRIWRVTKQSLSPFMKNTALGSALFSTYQVVDDKLIIKIVNCGEIQHMNVGNEVGLKSAIAAFAGCAAGAVHGTL-DIAYNAMFSNR---SVMHVKGTLVSHTLVHGTLFSTFQLAKFGALAVGGKDLSQWGGAVAVGVAGAVAGVAQETMAFYSCRLEKHGLRRGIAAAWKLPLPSWR-----------GVLAAVPAST---LGFLAFEYGRLTGSGNSS 908
            + G +R+  R A +  RL     +GS PR  +VP + +   +D L+++ +    + E       +  S +  V    W  T   +   +++T LGS  +++Y+V    L+    +   I   +V   V     ++  AG  AG++HG+L  ++  AM + +   S   + G L+SHTL H  +FS+++  K   +     D +   GA+ +  A A +G+  E   +Y+   E+      +     LPLP+ R           G  + +P+ T   +G+LA+EY + T  G S+
Sbjct:   27 LGGAMRNALRTAVTRIRLQ-NPIVGSFPRTPKVPTKAVATASDNLSFLMDVTGYMKEAKEQIAEKTSSKAKAVKLVQWATTTW-MPNLVRSTILGSVTWTSYEVTTASLLA--TSPSTIASPHVAILVPWVFGVSIVAGTVAGSLHGSLWSVSERAMAAFKHEPSAFRIPGVLLSHTLTHLAMFSSYEATKAFLMHDIEGDHTDIDGALCIVGAAATSGLVGEIATYYAAPFEQQSFTTAMHELRTLPLPTLRSMAPSGFSTMLGSPSLLPSETHARIGWLAYEYAKETFDGTSA 317
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig677.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
W7TN91_9STRA4.990e-1629.21Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A024UEM2_9STRA1.840e-925.08Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig677contigC-tenellus_contig677:4352..5403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1052
Hectar predicted targeting categoryother localisation
Exons1
Cds size903
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.7272437-UTR-C-tenellus_contig677:4351..43951680789990.7272437-UTR-C-tenellus_contig677:4351..4395Choristocarpus tenellus KU2346UTRC-tenellus_contig677 4352..4395 +
1680789990.750431-UTR-C-tenellus_contig677:5298..54031680789990.750431-UTR-C-tenellus_contig677:5298..5403Choristocarpus tenellus KU2346UTRC-tenellus_contig677 5299..5403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.7367096-CDS-C-tenellus_contig677:4395..52981680789990.7367096-CDS-C-tenellus_contig677:4395..5298Choristocarpus tenellus KU2346CDSC-tenellus_contig677 4396..5298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig677.6.1prot_C-tenellus_contig677.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig677 4396..5298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig677.6.1

>prot_C-tenellus_contig677.6.1 ID=prot_C-tenellus_contig677.6.1|Name=mRNA_C-tenellus_contig677.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=301bp
MMIKDNEEKENDLVAGIVRSLARQARSLSRLLAGADIGSLPRRVPARRLG
KLTDQLNYVQEFYRNIFEKGWNKDTRQRSNSGGVSQRIWRVTKQSLSPFM
KNTALGSALFSTYQVVDDKLIIKIVNCGEIQHMNVGNEVGLKSAIAAFAG
CAAGAVHGTLDIAYNAMFSNRSVMHVKGTLVSHTLVHGTLFSTFQLAKFG
ALAVGGKDLSQWGGAVAVGVAGAVAGVAQETMAFYSCRLEKHGLRRGIAA
AWKLPLPSWRGVLAAVPASTLGFLAFEYGRLTGSGNSSGQHNGTTAVSAE
*
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mRNA from alignment at C-tenellus_contig677:4352..5403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig677.6.1 ID=mRNA_C-tenellus_contig677.6.1|Name=mRNA_C-tenellus_contig677.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1052bp|location=Sequence derived from alignment at C-tenellus_contig677:4352..5403+ (Choristocarpus tenellus KU2346)
AGAGACTTACTAATAATAATTGTAGTACAACCCTGACATCAACGATGATG
ATAAAAGACAACGAAGAGAAAGAGAACGATCTCGTAGCTGGAATAGTCAG
ATCGCTAGCTCGTCAGGCGCGATCACTCTCTCGACTCTTAGCTGGTGCAG
ACATTGGTAGTTTGCCAAGGAGAGTGCCAGCTAGAAGACTGGGAAAGTTG
ACAGATCAACTCAACTACGTCCAAGAATTTTACCGTAATATATTCGAGAA
AGGATGGAACAAAGACACGCGTCAGAGAAGCAATAGTGGAGGTGTAAGCC
AACGTATCTGGCGGGTCACAAAGCAGTCGTTGTCACCTTTTATGAAGAAT
ACTGCACTGGGCAGTGCGTTGTTCTCGACCTACCAGGTGGTGGATGACAA
ACTGATCATCAAAATAGTGAACTGCGGGGAGATCCAGCACATGAATGTAG
GTAACGAGGTGGGGTTAAAGAGTGCCATTGCTGCGTTCGCAGGATGCGCA
GCTGGTGCTGTACATGGAACTTTGGATATAGCTTACAACGCCATGTTTTC
CAACAGGTCGGTGATGCACGTCAAAGGCACTCTCGTGTCCCATACCCTGG
TGCATGGAACTCTCTTTTCCACATTTCAGCTGGCTAAATTCGGTGCTTTG
GCGGTTGGTGGTAAAGATTTATCACAGTGGGGAGGTGCTGTTGCTGTTGG
CGTTGCTGGGGCGGTGGCAGGCGTCGCACAAGAGACTATGGCTTTCTACT
CTTGTAGACTTGAGAAACACGGTCTTCGACGCGGGATTGCAGCAGCCTGG
AAGCTTCCGCTGCCCAGCTGGCGTGGGGTTTTGGCGGCTGTACCAGCATC
CACCCTTGGGTTTTTGGCATTTGAATATGGAAGGTTGACAGGTTCAGGTA
ACAGCAGTGGCCAACATAATGGGACTACAGCTGTTAGTGCAGAGTAGTGA
TATGTACTAAAGTACATCAACTTATTTTTTTAGGTGCCTTCGTGACTCTT
TCAAATTAGATTGTGAAAGCAGGGGAGATACCCAGGTGCTTCCACCTCAG
AG
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Coding sequence (CDS) from alignment at C-tenellus_contig677:4352..5403+

>mRNA_C-tenellus_contig677.6.1 ID=mRNA_C-tenellus_contig677.6.1|Name=mRNA_C-tenellus_contig677.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=903bp|location=Sequence derived from alignment at C-tenellus_contig677:4352..5403+ (Choristocarpus tenellus KU2346)
ATGATGATAAAAGACAACGAAGAGAAAGAGAACGATCTCGTAGCTGGAAT
AGTCAGATCGCTAGCTCGTCAGGCGCGATCACTCTCTCGACTCTTAGCTG
GTGCAGACATTGGTAGTTTGCCAAGGAGAGTGCCAGCTAGAAGACTGGGA
AAGTTGACAGATCAACTCAACTACGTCCAAGAATTTTACCGTAATATATT
CGAGAAAGGATGGAACAAAGACACGCGTCAGAGAAGCAATAGTGGAGGTG
TAAGCCAACGTATCTGGCGGGTCACAAAGCAGTCGTTGTCACCTTTTATG
AAGAATACTGCACTGGGCAGTGCGTTGTTCTCGACCTACCAGGTGGTGGA
TGACAAACTGATCATCAAAATAGTGAACTGCGGGGAGATCCAGCACATGA
ATGTAGGTAACGAGGTGGGGTTAAAGAGTGCCATTGCTGCGTTCGCAGGA
TGCGCAGCTGGTGCTGTACATGGAACTTTGGATATAGCTTACAACGCCAT
GTTTTCCAACAGGTCGGTGATGCACGTCAAAGGCACTCTCGTGTCCCATA
CCCTGGTGCATGGAACTCTCTTTTCCACATTTCAGCTGGCTAAATTCGGT
GCTTTGGCGGTTGGTGGTAAAGATTTATCACAGTGGGGAGGTGCTGTTGC
TGTTGGCGTTGCTGGGGCGGTGGCAGGCGTCGCACAAGAGACTATGGCTT
TCTACTCTTGTAGACTTGAGAAACACGGTCTTCGACGCGGGATTGCAGCA
GCCTGGAAGCTTCCGCTGCCCAGCTGGCGTGGGGTTTTGGCGGCTGTACC
AGCATCCACCCTTGGGTTTTTGGCATTTGAATATGGAAGGTTGACAGGTT
CAGGTAACAGCAGTGGCCAACATAATGGGACTACAGCTGTTAGTGCAGAG
TAG
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