mRNA_C-tenellus_contig6766.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6766.2.1
Unique NamemRNA_C-tenellus_contig6766.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6766.2.1 vs. uniprot
Match: D8LAV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAV8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.160e-26
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 LRIRSRRALKRIHVGEYRRNQALRREQERWEGLFEVNFETLSLDHTPRYTPPYVLQDGWSPLPENKPDLPFKV*RTSKANSFPVYRAIKNGRTKTKTIIRRASGDIE 321
            +R+RSR ALKR +  + R  QA R E  R      V+ E+L L + PR TP +VL++GW P PE+KPDLPF+V RT K    PVYR IKNGRT+T TI+++A+GD++
Sbjct:    1 MRVRSRSALKRFNPKQARETQAERNEARRILESGPVDLESLQLAYPPRTTPEFVLKNGWCPPPESKPDLPFQVARTGKGGFIPVYRDIKNGRTRTVTIVKKATGDMK 107
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BLAST of mRNA_C-tenellus_contig6766.2.1 vs. uniprot
Match: A0A5D6Y004_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y004_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.960e-11
Identity = 37/76 (48.68%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   97 LFEVNFETLSLDHTPRYTPPYVLQDGWSPLP-ENKPDLPFKV*RTSKANSFPVYRAIKNGRTKTKTIIRRASGDIE 321
            L +V  E   L + P Y P  V  +GWSP P E  P LPF V RT+     PVYR I+NGRT+  TI+RR  GD E
Sbjct:   39 LPQVELEVPPLKYEPTYEPERVSFNGWSPPPAEPLPGLPFHVKRTAVGLQLPVYRDIRNGRTRVLTILRRYHGDEE 114
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BLAST of mRNA_C-tenellus_contig6766.2.1 vs. uniprot
Match: A0A7S3XRT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRT8_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 5.430e-9
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:  154 PYVLQDGWSPLPENKPD-LPFKV*RTSKANSFPVYRAIKNGRTKTKTIIRRASGDIE 321
            P  L +GW+P P   PD  PF V RT K    PVY  I+NGRTKT TI+RR  GD E
Sbjct:   68 PKALPNGWTPPPATVPDGYPFTVTRTLKGKWLPVYTDIRNGRTKTFTIVRRIEGDPE 124
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6766.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LAV8_ECTSI2.160e-2651.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5D6Y004_9STRA1.960e-1148.68Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3XRT8_HETAK5.430e-954.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6766contigC-tenellus_contig6766:3396..4648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LAV8
PFAMsImg2
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K17430
Hectar predicted targeting categorymitochondrion
Exons3
Evalue2.36e-12
EggNOG OGs2CXPQ@1|root,2RYXJ@2759|Eukaryota
DescriptionMitochondrial large subunit ribosomal protein (Img2)
Cds size222
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.4300687-UTR-C-tenellus_contig6766:3395..34941680789990.4300687-UTR-C-tenellus_contig6766:3395..3494Choristocarpus tenellus KU2346UTRC-tenellus_contig6766 3396..3494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.4478648-CDS-C-tenellus_contig6766:3494..34961680789990.4478648-CDS-C-tenellus_contig6766:3494..3496Choristocarpus tenellus KU2346CDSC-tenellus_contig6766 3495..3496 -
1680789990.4588568-CDS-C-tenellus_contig6766:4058..41851680789990.4588568-CDS-C-tenellus_contig6766:4058..4185Choristocarpus tenellus KU2346CDSC-tenellus_contig6766 4059..4185 -
1680789990.4743106-CDS-C-tenellus_contig6766:4555..46481680789990.4743106-CDS-C-tenellus_contig6766:4555..4648Choristocarpus tenellus KU2346CDSC-tenellus_contig6766 4556..4648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6766.2.1prot_C-tenellus_contig6766.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6766 3495..4648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6766.2.1

>prot_C-tenellus_contig6766.2.1 ID=prot_C-tenellus_contig6766.2.1|Name=mRNA_C-tenellus_contig6766.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=74bp
LRIRSRRALKRIHVGEYRRNQALRREQERWEGLFEVNFETLSLDHTPRYT
PPYVLQDGWSPLPENKPDLPFKV*
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mRNA from alignment at C-tenellus_contig6766:3396..4648-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6766.2.1 ID=mRNA_C-tenellus_contig6766.2.1|Name=mRNA_C-tenellus_contig6766.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1253bp|location=Sequence derived from alignment at C-tenellus_contig6766:3396..4648- (Choristocarpus tenellus KU2346)
CTTCGAATCCGCTCACGAAGGGCGTTGAAACGAATTCATGTTGGAGAATA
TAGGAGGAATCAGGCGCTGAGGAGAGAACAGGAGAGGTGGGAGGTTGTAC
CAATATCGAGCAATGTGGGGTATTGAGGGGGTTTGCGTTGAGGTGACTGA
ATCGACTTCGGTGTTATCGCGTGTAAATTGTGTCTGGTTGACTTGTTGTA
TCACTGCGATATATTTTGCAGGTATCTGAGCTGTCAAGGCGGCACCACCT
CCACCCCTCTTCTTCACGTTGTCATGCTCAATTGGATCGTATGTGTTGTT
GTCATTACAAAGAAGATCAAAATGCCTGCCTCAGTCATTGTCCTTAAGAT
AGATAATCCCTTTGGCTTATCCTCGAGATTGTAGTGTAGTCGTAAACCAG
AAATAACTATATACGCCCTGTCTATTTCGTGTTGTTGCTGCATTTGCCTA
TGATAGGTTGGAGGGACTATTCGAAGTGAACTTCGAAACCCTATCACTTG
ATCACACACCTCGGTACACTCCGCCGTATGTGCTTCAGGACGGCTGGTCA
CCACTGCCGGAAAATAAGCCAGATTTGCCGTTCAAGGTGTGTTGACGATT
ATCCCCTCATGTCTCCTCCCCTTTTCATTCTCGGTGTCACTATATGCAGA
GAGAAACTAGATAAGGTGACCTCAAAGCAAATATTCGCTGCCTCGCAGTA
TTTCCCGTTGTAGTAGAGGCCTGCATAGATGTGGGATCTCCTTGCATATT
TTCTGTTTCCTTCCACACACAAAGTCTTTCTCATTAACTGGCATTGCTGA
GGTATCTTTGGAGTATGCAGTTGCCTCGAAGACTCTCTGGAACGTAAAAG
ACGCCTTGATTTGGTGCGGAAGCCGTGTTTATTGAAATATTTCGTAAAAA
AGTCATGGAGAAGTAAACCGTTTCTTGTTCTCGTTTGACACTGCTTGGGT
GAAAGTCTGCCTGCCTCTCCTAAGAGGGGTAAGCACATGCGTGTGAAAAA
TTGGTAGTCCTTAAGCTGGGACTGACTTAACACAGTTGAGGGAGACACAA
ACCCTTCAGTGCTTTACTAAGCAAGAACTCTTTGTTTCTGGTTCAAGTGA
TATCCTCACTCCTGTGTTGTGGTGCATCCAACTTTAATTGTTCCTCAGGT
AGAACGCACATCAAAAGCAAACAGTTTTCCTGTGTACAGGGCCATTAAAA
ACGGAAGGACAAAGACAAAGACAATAATCAGAAGAGCTTCTGGAGATATC
GAG
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Coding sequence (CDS) from alignment at C-tenellus_contig6766:3396..4648-

>mRNA_C-tenellus_contig6766.2.1 ID=mRNA_C-tenellus_contig6766.2.1|Name=mRNA_C-tenellus_contig6766.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=222bp|location=Sequence derived from alignment at C-tenellus_contig6766:3396..4648- (Choristocarpus tenellus KU2346)
CTTCGAATCCGCTCACGAAGGGCGTTGAAACGAATTCATGTTGGAGAATA
TAGGAGGAATCAGGCGCTGAGGAGAGAACAGGAGAGGTGGGAGGGACTAT
TCGAAGTGAACTTCGAAACCCTATCACTTGATCACACACCTCGGTACACT
CCGCCGTATGTGCTTCAGGACGGCTGGTCACCACTGCCGGAAAATAAGCC
AGATTTGCCGTTCAAGGTGTAA
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