mRNA_C-tenellus_contig6757.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6757.1.1
Unique NamemRNA_C-tenellus_contig6757.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6757.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6757contigC-tenellus_contig6757:1360..1910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size226
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789989.9566584-UTR-C-tenellus_contig6757:1359..14261680789989.9566584-UTR-C-tenellus_contig6757:1359..1426Choristocarpus tenellus KU2346UTRC-tenellus_contig6757 1360..1426 -
1680789989.9896705-UTR-C-tenellus_contig6757:1877..19101680789989.9896705-UTR-C-tenellus_contig6757:1877..1910Choristocarpus tenellus KU2346UTRC-tenellus_contig6757 1878..1910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789989.9672432-CDS-C-tenellus_contig6757:1426..14731680789989.9672432-CDS-C-tenellus_contig6757:1426..1473Choristocarpus tenellus KU2346CDSC-tenellus_contig6757 1427..1473 -
1680789989.9765043-CDS-C-tenellus_contig6757:1798..18771680789989.9765043-CDS-C-tenellus_contig6757:1798..1877Choristocarpus tenellus KU2346CDSC-tenellus_contig6757 1799..1877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6757.1.1prot_C-tenellus_contig6757.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6757 1427..1877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6757.1.1

>prot_C-tenellus_contig6757.1.1 ID=prot_C-tenellus_contig6757.1.1|Name=mRNA_C-tenellus_contig6757.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=42bp
MGNMCDCYYTLHHSLYYTTSLTRYEVYNINEANDVYLIRIT*
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mRNA from alignment at C-tenellus_contig6757:1360..1910-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6757.1.1 ID=mRNA_C-tenellus_contig6757.1.1|Name=mRNA_C-tenellus_contig6757.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=551bp|location=Sequence derived from alignment at C-tenellus_contig6757:1360..1910- (Choristocarpus tenellus KU2346)
AAGGTCAACCAAAAGGTGAGCTCTAATAGCGAAATGGGAAACATGTGTGA
TTGTTACTATACATTGCACCATTCATTGTATTACACGACTTCATTAACAC
GATATGAAGTATGTGTGAAACTATCTCAGAGGGTACGATTTTTTCCCTGT
TTGTCCATTTGGGGCTTGGCTTCTCACGGGTTTTAAAGGACATTCTACCT
ACTCCAAAATGTTTTGGAATAGATAGAATGTATGCAGTATGAAAAGAAGA
GTCCAGAACAAGGATAATTGACATCTCCTAACAACATGATAGCCAAAATT
ACATCAAAATTTCAACATTAGATTTTGGCCCCAAATGGATTCGACTCTAC
CCTCTAAGATACTTTGGCTCAATTTCAACATTAGATTTTGGCCTCAAATG
GACGCGGCTCTACCCTCTAAGATACTTTGGCTCGTATACAATATAAACGA
GGCTAACGATGTATATCTGATCAGGATAACATAGCCTAAAGGTTGATGGT
GTGTGGTCAGCACACCAATCAAGCTTACGAACGAGGTCTGAGTGTATGGG
A
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Coding sequence (CDS) from alignment at C-tenellus_contig6757:1360..1910-

>mRNA_C-tenellus_contig6757.1.1 ID=mRNA_C-tenellus_contig6757.1.1|Name=mRNA_C-tenellus_contig6757.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=126bp|location=Sequence derived from alignment at C-tenellus_contig6757:1360..1910- (Choristocarpus tenellus KU2346)
ATGGGAAACATGTGTGATTGTTACTATACATTGCACCATTCATTGTATTA
CACGACTTCATTAACACGATATGAAGTATACAATATAAACGAGGCTAACG
ATGTATATCTGATCAGGATAACATAG
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