mRNA_C-tenellus_contig6753.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6753.4.1
Unique NamemRNA_C-tenellus_contig6753.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6753.4.1 vs. uniprot
Match: D7FJJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ5_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.440e-71
Identity = 145/289 (50.17%), Postives = 178/289 (61.59%), Query Frame = 1 
Query:    7 QALPEEKKSLSAELFWLTFRLHAKLPLTPLNMRYWSDAGDGGRRILGDLFNGTDV--EGCVMPLHVLCSFAEGSFHRVKTKTNKVGRGRQKDNIPQALSSLVTPTRTMAARRLLSSHVTREAAV-LQQDLM-GALDATPPLMYYAAAWAWLELLTRGPRHAEDAMMKALVLANKAFWPHGDSSTQGVSRSRESLPGAGI---FAGNHKYTWNVVPEESFACVCLERMHRSFCEMLVLAQHYIPADTGPRKVREAVVRGLLSFPAEASMLAMLLHGEKYSGSQQRLVHHL 852
            QALPE+KK  SAELFWLTFRLHA LPL+P +     D        +G+LF   +    G  M L +LCSFAEG F R K+K+    R ++      A S L+TP R +AAR+L++  V REAA  +Q+D+  GALD TPP MY+A AW W+E L+ G   AEDAM K L LA  +  P G     GV+    S    GI     GN  Y WNVVPE +   VCLERMHR F E++ LAQ Y P D GPR+VR  ++RGL+SFPAE  ML +LL  E+ S SQQRLVHHL
Sbjct:  556 QALPEDKKGFSAELFWLTFRLHAGLPLSPRDPHPGEDD-----ETVGNLFETGNKGRHGREMALLMLCSFAEGGFKRPKSKSK---RSKRDGKGSSAESILITPPRLLAARKLMADRVAREAAQEVQRDVADGALDMTPPFMYHAIAWVWMEFLSVGLDAAEDAMSKCLGLAQPSTTPTGSGEASGVAAESSSSSNFGIGGTSTGNKPYIWNVVPEHTALGVCLERMHRGFSELMTLAQRYNPVDAGPRRVRAVLLRGLVSFPAEPGMLCLLLDTEQLSSSQQRLVHHL 836
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BLAST of mRNA_C-tenellus_contig6753.4.1 vs. uniprot
Match: A0A6H5JC63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC63_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 1.290e-63
Identity = 138/298 (46.31%), Postives = 172/298 (57.72%), Query Frame = 1 
Query:    7 QALPEEKKSLSAELFWLTFRLHAKLPLTPLNMRYWSDAGDGGRRILGDLFNGTDV--EGCVMPLHVLCSFAEGSFHRVKTKTNKV---GRGRQKDNIPQALSSLVTPTRTMAARRLLSSHVTREAAV-LQQDLM---GALDATPPLMYYAAAWAWLELLTRGPRHAEDAMMKALVLANKAFWPHGDSSTQGVSRSRESLPG-------AGIFAGNHKYTWNVVPEESFACVCLERMHRSFCEMLVLAQHYIPADTGPRKVREAVVRGLLSFPAEASMLAMLLHGEKYSGSQQRLVHHL 852
            QALPE+KK  SAELFWLTFRLHA LPL+P +     D        +G+LF   +    G  M L +LCSFAEG F R K+K+ +    G+G   + I      L+TP R +AAR+L++  V REAA  +Q+D     GALD TPP MY+A AW W+E ++ G   A+DAM K L LA  +                             G   GN  YTWNVVPE +   VCLERMHR F E++ LAQ Y P D GPR+VR  ++RGL+SFPAE  ML +LL  E+ S SQQRLVHHL
Sbjct: 1096 QALPEDKKGFSAELFWLTFRLHAGLPLSPRDPHPGEDD-----ETVGNLFETGNKGRNGREMALLMLCSFAEGGFKRPKSKSKRSKRDGKGSSAEPI------LITPPRLLAARKLMADRVAREAAQEVQRDADVADGALDMTPPFMYHAIAWVWMEFISVGLGAAQDAMSKCLELAQPSXXXXXXXXXXXXXXXXXXXXXXXXKFGIGGTSTGNKPYTWNVVPEHTALGVCLERMHRGFSELMTLAQRYNPVDAGPRRVRAVLLRGLVSFPAEPGMLCLLLDTEQLSSSQQRLVHHL 1382
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6753.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJJ5_ECTSI1.440e-7150.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC63_9PHAE1.290e-6346.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6753contigC-tenellus_contig6753:2996..5919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJJ5
PFAMsNRDE-2
Model size870
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001672,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006325,GO:0006342,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010847,GO:0016043,GO:0016246,GO:0016441,GO:0016458,GO:0019219,GO:0019222,GO:0031047,GO:0031048,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031445,GO:0032991,GO:0033043,GO:0033044,GO:0035194,GO:0040029,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0071013,GO:0071840,GO:0080090,GO:1902275,GO:1902494,GO:1902679,GO:1902802,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons5
Evalue2.36e-72
EggNOG OGsKOG1972@1|root,KOG1972@2759|Eukaryota
DescriptionNRDE-2, necessary for RNA interference, domain containing
Cds size870
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789989.7740498-CDS-C-tenellus_contig6753:2995..31301680789989.7740498-CDS-C-tenellus_contig6753:2995..3130Choristocarpus tenellus KU2346CDSC-tenellus_contig6753 2996..3130 -
1680789989.786696-CDS-C-tenellus_contig6753:3436..35731680789989.786696-CDS-C-tenellus_contig6753:3436..3573Choristocarpus tenellus KU2346CDSC-tenellus_contig6753 3437..3573 -
1680789989.7955596-CDS-C-tenellus_contig6753:3786..40021680789989.7955596-CDS-C-tenellus_contig6753:3786..4002Choristocarpus tenellus KU2346CDSC-tenellus_contig6753 3787..4002 -
1680789989.804708-CDS-C-tenellus_contig6753:4988..50981680789989.804708-CDS-C-tenellus_contig6753:4988..5098Choristocarpus tenellus KU2346CDSC-tenellus_contig6753 4989..5098 -
1680789989.8148842-CDS-C-tenellus_contig6753:5647..59191680789989.8148842-CDS-C-tenellus_contig6753:5647..5919Choristocarpus tenellus KU2346CDSC-tenellus_contig6753 5648..5919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6753.4.1prot_C-tenellus_contig6753.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6753 2996..5919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6753.4.1

>prot_C-tenellus_contig6753.4.1 ID=prot_C-tenellus_contig6753.4.1|Name=mRNA_C-tenellus_contig6753.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=290bp
LEQALPEEKKSLSAELFWLTFRLHAKLPLTPLNMRYWSDAGDGGRRILGD
LFNGTDVEGCVMPLHVLCSFAEGSFHRVKTKTNKVGRGRQKDNIPQALSS
LVTPTRTMAARRLLSSHVTREAAVLQQDLMGALDATPPLMYYAAAWAWLE
LLTRGPRHAEDAMMKALVLANKAFWPHGDSSTQGVSRSRESLPGAGIFAG
NHKYTWNVVPEESFACVCLERMHRSFCEMLVLAQHYIPADTGPRKVREAV
VRGLLSFPAEASMLAMLLHGEKYSGSQQRLVHHLSQARM*
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mRNA from alignment at C-tenellus_contig6753:2996..5919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6753.4.1 ID=mRNA_C-tenellus_contig6753.4.1|Name=mRNA_C-tenellus_contig6753.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2924bp|location=Sequence derived from alignment at C-tenellus_contig6753:2996..5919- (Choristocarpus tenellus KU2346)
CTCGAGCAGGCTCTGCCAGAGGAAAAGAAGTCCTTGTCTGCGGAGCTATT
TTGGCTCACCTTCCGTCTGCATGCTAAATTACCACTCACACCTCTTAACA
TGAGATACTGGTCGGATGCTGGTGATGGTGGTAGACGCATCCTTGGTGAC
CTCTTTAATGGTACTGATGTGGAGGGGTGTGTGATGCCATTACATGTGTT
GTGTAGTTTTGCAGAGGGAAGCTTTCACCGTGTCAAGACCAAGACCAACA
AGGTAGGCAGAGGTAGGCAGAAGTACATTGTACCAACCTTTGGGCATAGC
TGTGTGGTGCTACTATGCTACTATGGTGATATGATGATGCCACTATGGTT
GGAAGGCTCGCAATAGGTGTACTATTAAATCTACTTTGTATCTTGTAATA
TGTGGTGTGGAAGAGAAATCTTTCAGAGTCTTTGTTAGTCTGGCACCACT
TCTTCTTCTTCTTCTTCTGTATATGCAACACATCATATTATTATTTTCAC
TAGTAGAAATGGACTAAGTCAGGTGTAAGTCAGGTGTAAATGTACCAAGC
CAGAGGACTGTTGAATTTGTTGTCACCTCTTGTAGTCTCATGCTGTAATG
TCTGTACAAGTGACATTTTCAACTACTCTAGAGTGCCTCCAGAGGTGGTT
CATGAGGTTAAGAGGTGCATGGGCATTGCTGGTAGCCGCACTTTGTTGCC
ACCCTGTTTGTTATGCCTTAATTTTCCACAGTAATTATTATTTTTATTTT
TTTACATTGATTTTTTTGTCCCAGCGGTCCAAGGTTAGGGATAACGATTC
ACAAGGTGGTGACAGTGTTAGGGATAACATACCACAAGCACTTTCATCTC
TGGTCACACCAACACGAACAATGGCAGCTCGGAGGCTACTGTCCTCACAT
GTCACCAGAGAAGCTGCTGTGCTGCAACAAGGTGACTTCATGTTGTAGGT
GTTGAATGACCCATGTTGGAAGTGTTGATTGACCCATGTTGGAGGTGTTG
ATTGACCCATGTTGGAGGTGTTGATTGACCAATGTTGGAGGTGTTGATTG
ACCCATGTTGGAGGTGTTGATTGACCCATGTTGGAGGTGTTGATTGACCC
ATGTTGGAGGTGTTGATTGACCCATGTTGGAAGTGTTGAATGACCCTCTG
GACATCGAAAAAGTGCAAACAACCTAGAAATGGAGATGATCACAACCCCT
TCATGTAAGAGGAAAGTACTTATCAACAGTGGGTTTCATAATATGCTATG
AGAATTTCACTCACATTTCACATGGACCTTCATGTAATGCGAATTCGCAT
GGAAAGGAACTTAGGCACCCCAGGTGAGGCATCATTGTAGCACATTGACA
CCTCAAGGGTCACTCAGGGATGAAGTAATGGAGGTATTTCCCCTTTGATA
TCAGATACCCATGGTAAGATTTTGTTATGAAGATAAGGAGTACTATAAGA
AACACTTTTATTAATAGACTAGTGTAGTTACTATCACAGTAACAGCCTTA
TGATGAGTGAAAGTATCTTAGAGGGTACGAGTTTAGCTCTGATGTAAGAT
AAGGTGTAAGATGTAAGTTAGCTGCTTGACAGAGTGAGTCCATGGAATAT
TTTGGTCAACGATTATATGCTGTAGAGTAACACCTTGCCTTCTTTGTTAT
GGTCAGAGACTATCTGTCCCCACTACTGGTGAGAGACAACACTTGAAGCG
CTACTTCTCATAGAATTCAGGGACATCACTACCTAGTGCCATCCCTACCT
ATACCTCTTCAAAATAGATTTTCTGAGTGTGTGTAATGGTACATCCATCA
TTCTTATCTTTCTTGGAGTACCCCAAAAGCAACAAAAATAATGCTAGCAG
TCAGTCAGTCAGTCAGTTGATGATCAATATTGCACATACCCAGGGACTGA
AGGGGAGAAACTTCAAGATCTTATGGGGGCCTTGGATGCAACGCCTCCTC
TCATGTATTACGCTGCAGCTTGGGCATGGTTGGAGTTACTCACTCGAGGG
CCAAGACATGCAGAGGACGCCATGATGAAAGCCCTGGTCTTGGCAAACAA
AGCCTTTTGGCCACATGGTGATTCAAGCACTCAGGGTGTGTCAAGATCAA
GGGAAAGTCTCCCAGGCGCAGGGATATTTGCTGGTATGTTGTGAGAACAG
CTCTTACCATGTAGTACTTGAGCTAGCTGTGTATTGTGTGGTTTGTAGGA
GAAATGGATGGCAATGATGATCACAGAGTACCTTCAAACAAGTCTGGACC
TTTCTTGTAAAATGAAAGCCTTGCCCTTTCAGTTTGAAGTTTCTTTTGTT
AATTGTGAGCTGTTCTACCTAACGTCTCCATGGAATTTTTGAAAAGGAAA
CCACAAGTATACCTGGAATGTAGTGCCTGAGGAGTCCTTTGCGTGTGTCT
GCTTGGAGCGCATGCACCGGTCGTTTTGTGAAATGCTGGTCTTGGCACAG
CACTACATCCCTGCAGACACTGGGCCCCGAAAGGTAAAACATCTGATTGG
CATCTGATCAACATCTGGTTGGGAACTGTTGTCCTGTGGAGTCCTGCGCT
GATGTGTTGTCTTGTTATTCTTTGTCATTCTGTGAGTTACTTATCATAGA
TACAGTGCTAAGTTGCTATAATTACATCTTCATCATGATTGTTCACTTCA
AGGTGGTGGTTTATTAATGCTTGACTCTTTTGTGGTAGTAATCGTGTTTA
TTTTGAAATTATTTTGAAATTATAAAACAACTGTTCCATTAATTTTGTGC
TGCACTTGTTTGATTGGTTCATTTCAATGCCTTTTTCAGGTGAGGGAAGC
TGTAGTCCGTGGTCTCCTTTCTTTCCCAGCTGAGGCCAGCATGCTTGCTA
TGTTGCTACATGGAGAGAAGTACTCAGGGAGCCAGCAGAGGCTTGTGCAT
CACCTGTCACAGGCAAGGATGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig6753:2996..5919-

>mRNA_C-tenellus_contig6753.4.1 ID=mRNA_C-tenellus_contig6753.4.1|Name=mRNA_C-tenellus_contig6753.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=870bp|location=Sequence derived from alignment at C-tenellus_contig6753:2996..5919- (Choristocarpus tenellus KU2346)
CTCGAGCAGGCTCTGCCAGAGGAAAAGAAGTCCTTGTCTGCGGAGCTATT
TTGGCTCACCTTCCGTCTGCATGCTAAATTACCACTCACACCTCTTAACA
TGAGATACTGGTCGGATGCTGGTGATGGTGGTAGACGCATCCTTGGTGAC
CTCTTTAATGGTACTGATGTGGAGGGGTGTGTGATGCCATTACATGTGTT
GTGTAGTTTTGCAGAGGGAAGCTTTCACCGTGTCAAGACCAAGACCAACA
AGGTAGGCAGAGGTAGGCAGAAGGATAACATACCACAAGCACTTTCATCT
CTGGTCACACCAACACGAACAATGGCAGCTCGGAGGCTACTGTCCTCACA
TGTCACCAGAGAAGCTGCTGTGCTGCAACAAGATCTTATGGGGGCCTTGG
ATGCAACGCCTCCTCTCATGTATTACGCTGCAGCTTGGGCATGGTTGGAG
TTACTCACTCGAGGGCCAAGACATGCAGAGGACGCCATGATGAAAGCCCT
GGTCTTGGCAAACAAAGCCTTTTGGCCACATGGTGATTCAAGCACTCAGG
GTGTGTCAAGATCAAGGGAAAGTCTCCCAGGCGCAGGGATATTTGCTGGA
AACCACAAGTATACCTGGAATGTAGTGCCTGAGGAGTCCTTTGCGTGTGT
CTGCTTGGAGCGCATGCACCGGTCGTTTTGTGAAATGCTGGTCTTGGCAC
AGCACTACATCCCTGCAGACACTGGGCCCCGAAAGGTGAGGGAAGCTGTA
GTCCGTGGTCTCCTTTCTTTCCCAGCTGAGGCCAGCATGCTTGCTATGTT
GCTACATGGAGAGAAGTACTCAGGGAGCCAGCAGAGGCTTGTGCATCACC
TGTCACAGGCAAGGATGTGA
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