mRNA_C-tenellus_contig6709.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6709.6.1
Unique NamemRNA_C-tenellus_contig6709.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A6H5L3Q3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q3_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 3.300e-51
Identity = 84/118 (71.19%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKGHKKVR 354
            IG RV DGNGFR TVRY GPVCTAKDP +PWIGVEFDDP RGKHDGAV K DG+  RYF+C  GGSGSFLK  K + G +M +AL QQYV M+APL+APEN++PDAYA+T+KG KKV+
Sbjct:   15 IGGRVVDGNGFRGTVRYVGPVCTAKDPTTPWIGVEFDDPARGKHDGAVEKPDGSSVRYFTCVNGGSGSFLKPSKFSTGISMAEALRQQYVDMNAPLLAPENLLPDAYASTSKGGKKVQ 132          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: D7G0Z3_ECTSI (Putative: beta-tubulin folding cofactor E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z3_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 4.440e-50
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKGHKK 348
            IG RV DGNGFRATVRY GPVCTAK+P +PWIGVEFDDP RGKHDGAV K DG+  RYF+C  GGSGSFLK  K + G +M +AL QQYV M+APL+APEN++PDAYA+T+KG KK
Sbjct:   15 IGGRVVDGNGFRATVRYVGPVCTAKEPTTPWIGVEFDDPARGKHDGAVEKPDGSSLRYFTCVNGGSGSFLKPGKFSTGISMAEALRQQYVDMNAPLLAPENLLPDAYASTSKGGKK 130          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A835YMA8_9STRA (Putative beta-tubulin folding cofactor E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMA8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.690e-40
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKG-HKKV 351
            +G RVQD  GFRATVRY GPVCT+KD  + WIGVEFDD  RGKHDGAV    G + RY SCT GGSGSFLK  K++AG  + DAL   YVA+DAPLVAP+N +   YA T +G HK++
Sbjct:   11 LGQRVQDEKGFRATVRYIGPVCTSKDKDATWIGVEFDDAARGKHDGAVESEQGELVRYLSCTDGGSGSFLKPHKIDAGAALADALAAHYVAVDAPLVAPDNKLVGQYAQTVRGRHKQI 128          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S1XKZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKZ2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 8.360e-35
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    4 GMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAK 336
            G RVQD +G+R TVRY+GPV T+K+  + W+GVE+DD TRGKHDG+VT  DG V RYF+   G   SFLK  K++AG + ++AL ++YV MDAPL+AP NV    YA T K
Sbjct:   35 GQRVQDADGYRGTVRYYGPVATSKNANANWVGVEWDDATRGKHDGSVTTKDGEVVRYFTVPEGKKASFLKPGKVDAGASFMEALGERYVGMDAPLLAPNNVFEGMYANTNK 145          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A4D9DAF6_9STRA (CAP-Gly domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAF6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.770e-31
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGS--GSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKGHKK 348
            +G RV D  G R TVRY GPV +AKDP + W+GVE+DDP RGKHDG+V  + G +HR+FSC   G    SFLK +KL+ G +++  L ++YVA DAPL AP  V  +AYA T++G +K
Sbjct:   12 LGQRVADEEGNRGTVRYLGPVASAKDPGAAWVGVEWDDPGRGKHDGSVLTAAGKIHRHFSCLKPGPTCASFLKPNKLDRGVSLMAVLHKRYVAPDAPLEAPNQVFENAYANTSRGGQK 129          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A482RY02_9ARCH (CAP-Gly domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY02_9ARCH)

HSP 1 Score: 114 bits (286), Expect = 2.540e-30
Identity = 51/117 (43.59%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPEN-VMPDAYAATAKGHKK 348
            +G RV D +G++ATVRYFGPV  A++    W+GVE+D+P+RGKHDG+     G +HRYF C A  +GSF++  K+++G ++  AL ++YV++++  +A E  ++PD++ +T+KG+ K
Sbjct:    8 VGDRVHDADGYKATVRYFGPVMAAQNKEEVWLGVEWDNPSRGKHDGSCVDEHGIIHRYFRC-ASTAGSFIRPSKVSSGISLERALHERYVSLESEEIAQEGGMLPDSFVSTSKGNMK 123          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S3HIA2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIA2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.470e-27
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAP-ENVMPDAYAATAKGHKK 348
            +G RV D  G++ATVRY GPV  AK+    W GVE+D+PTRGKHDG+   S G +HRYF C  G SGSF+K  K+  G T + AL  +YV +DAP +A  +  +P+ + +T +G++K
Sbjct:   15 VGCRVVDSEGYKATVRYIGPVVGAKNQEEIWFGVEWDNPTRGKHDGSSVDSSGKLHRYFECVHG-SGSFIKPTKVAYGRTFLAALNDRYVNLDAPTIAEADGTVPNVFVSTLRGNQK 130          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S3ZSI4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSI4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.210e-26
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 IGMRVQDGNGFRATVRYFGPVCTA-KDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENV 306
            +G R++D N FR T+RY GPV T+ KDP + W GVE+DD TRGKHDGAV K    + RYF+C AG +GSF+K  K++ G ++V+AL Q+YV +DAP+ AP  V
Sbjct:   16 VGTRIRDDNDFRGTIRYVGPVATSTKDPNATWYGVEWDDATRGKHDGAVEKDSQEI-RYFTCPAG-AGSFVKPKKVDRGSSLVEALRQKYVGLDAPVEAPLGV 116          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S1C881_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C881_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.670e-19
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQY 267
            +G RV D  G  ATV+Y GPV T+K   + ++G+E+DD TRGK+DG+VT +DG V RYF+ T+ G GSFLK   ++AG + V AL+ +Y
Sbjct:   26 VGQRVLDKKGDAATVKYVGPVATSKSAETVYVGLEWDDETRGKNDGSVTTADGAVVRYFT-TSPGRGSFLKVALVDAGTSFVAALIDRY 113          
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S1FN11_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FN11_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.900e-18
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   10 RVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVT-KSDGTVHRYFSC---------TAG-------GSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKGHKK 348
            RV+D +GF  T  Y GPV +AK+    ++GV +DDPTRGKHDG+V  +    + R+FS          +AG         GSF++  KL  G ++   L  +YV +DAPL+   NV+P   A TA+G  K
Sbjct:   41 RVRDADGFLGTALYLGPVASAKNAEEVYVGVAWDDPTRGKHDGSVICRRTNRLIRHFSLADRAKHLSSSAGDPRPASVSGGSFVRPAKLRGGVSLTSVLSDRYVPLDAPLLTRNNVLPGRVAMTARGVPK 170          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3Q3_9PHAE3.300e-5171.19CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0Z3_ECTSI4.440e-5071.55Putative: beta-tubulin folding cofactor E n=1 Tax=... [more]
A0A835YMA8_9STRA1.690e-4061.86Putative beta-tubulin folding cofactor E n=1 Tax=T... [more]
A0A7S1XKZ2_9STRA8.360e-3555.86Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D9DAF6_9STRA1.770e-3152.54CAP-Gly domain-containing protein n=2 Tax=Monodops... [more]
A0A482RY02_9ARCH2.540e-3043.59CAP-Gly domain-containing protein n=1 Tax=archaeon... [more]
A0A7S3HIA2_9STRA1.470e-2747.86Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3ZSI4_9STRA1.210e-2654.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1C881_9STRA7.670e-1950.56Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1FN11_9STRA4.900e-1839.23Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6709contigC-tenellus_contig6709:5342..6992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0Z3
Preferred nameTBCE
PFAMsCAP_GLY,LRR_6,LRR_9,Ubiquitin_2
Model size366
Max annot lvl2759|Eukaryota
KEGG koko:K21768
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000902,GO:0000904,GO:0003008,GO:0003012,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0006457,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007023,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007409,GO:0007422,GO:0007610,GO:0007626,GO:0008092,GO:0008150,GO:0008344,GO:0008582,GO:0009653,GO:0009791,GO:0009987,GO:0014889,GO:0015630,GO:0015631,GO:0016043,GO:0022008,GO:0022402,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030534,GO:0031109,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0034622,GO:0040007,GO:0040008,GO:0043014,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043500,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046785,GO:0048468,GO:0048589,GO:0048638,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048934,GO:0048935,GO:0048936,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051239,GO:0051258,GO:0051960,GO:0051963,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0097435,GO:0098916,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0120036,GO:0120039,GO:1902850,GO:1903047,GO:1904396,GO:1990727,GO:2000026
Exons3
Evalue9.33e-50
EggNOG OGsKOG3207@1|root,KOG3207@2759|Eukaryota
Descriptionpost-chaperonin tubulin folding pathway
Cds size360
COG categoryS
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789986.9955962-UTR-C-tenellus_contig6709:5341..53471680789986.9955962-UTR-C-tenellus_contig6709:5341..5347Choristocarpus tenellus KU2346UTRC-tenellus_contig6709 5342..5347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.0078812-CDS-C-tenellus_contig6709:5347..54381680789987.0078812-CDS-C-tenellus_contig6709:5347..5438Choristocarpus tenellus KU2346CDSC-tenellus_contig6709 5348..5438 +
1680789987.0191517-CDS-C-tenellus_contig6709:5782..58411680789987.0191517-CDS-C-tenellus_contig6709:5782..5841Choristocarpus tenellus KU2346CDSC-tenellus_contig6709 5783..5841 +
1680789987.0306847-CDS-C-tenellus_contig6709:6782..69921680789987.0306847-CDS-C-tenellus_contig6709:6782..6992Choristocarpus tenellus KU2346CDSC-tenellus_contig6709 6783..6992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6709.6.1prot_C-tenellus_contig6709.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6709 5348..6992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6709.6.1

>prot_C-tenellus_contig6709.6.1 ID=prot_C-tenellus_contig6709.6.1|Name=mRNA_C-tenellus_contig6709.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSD
GTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENV
MPDAYAATAKGHKKVRVKQ*
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mRNA from alignment at C-tenellus_contig6709:5342..6992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6709.6.1 ID=mRNA_C-tenellus_contig6709.6.1|Name=mRNA_C-tenellus_contig6709.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1651bp|location=Sequence derived from alignment at C-tenellus_contig6709:5342..6992+ (Choristocarpus tenellus KU2346)
ATTGGGATGAGGGTACAAGATGGCAACGGCTTCAGGGCCACGGTTCGATA CTTCGGACCAGTGTGTACTGCAAAGGACCCAGTGTCACCATGGATTGGTG AGATGTGAAGGGGCATGAAGCTATTAAAGAGAACTCTGAGCTGAAATAAT CTTCATATCCTCCAGCATAATGAGGTGCATCCTCTTTTGACCATATGGTT AGGTTGGATCCTCTGCCTTGCTCTCTGTAAGAATAGCTTGCAATTGTCCA TGGGTACGGCATGTTCCTTCCTTGAAGTTGTATCCAAAGCGAGATGTGGT CATACCGTATCTCTCTAGTCCTTGACATCTTAACCTCTCATTATTCAGGC GTAGGGGGCAAGGTGGACCATATGCATCGGTTGCAATAGCCTCACCCATC ACGTTCCCACGTAATGACAGTTGACCTCCACACACTTGCAGGTGTAGAGT TCGATGACCCCACAAGAGGAAAGCATGACGGCGCTGTCACAAAGTCAGAT GTAAGTTAAGCAGTTCAAGGTGGAGCCCACCACAACCCCCGTCTTACCGC CCCTTCAATCCACCCACTACCTACAATATGAATGTCTCTATTCCTTTTTC TACCAACACACCGCTAGAATTTCCGAGGCTCTCATATTGCAAGGGTCGCT GCTGCCACTGCTTGGTAAGTAGTACTCAGGACCACGTGGCAGGTCAAGCG ATAGCCTTAAGCGCAACTACCCATTTCCATTTTTTTTCGAGCGCAAGAGA CTCACTGATGGTAAAATCTAATGCCACTGCTGCATCTTAGGGTAGCACTT TGTCTCTAAATCCATTGCTATAATATGTTATTGCTCATGACCGAAATTGC TTTGACTTGATGAATCTCCTTCGTCACGAGAGGGCCAACTTTGCACGTTT CGGAGAGGTCCGAGGTCTTGAATAAAGCTAAGAACCACCCTGACATCGAC CTGATCCCAAAGAATTTTCTATGTTGTGTTTTACATCTGCAGGGACTGAA AATTACCTAGCAGTAGGCATAGGTACCTATTGGTATTAATATTATAGTAG TCATCCATTGTTGTGGAATTTTGTGTCACTTTTTAGAGAGTCATGTAGGT TGGACATGCATGAGTACACCTTCCTACGTGACAATGTCATCATATCTCCA CTGTTGCTTTCTTGTTGGGCATGATCTTTGGTGTATCTGTATGATCATCA CATCAATAACAAGAACTACTTCGCCCAATCAGTAAGATACGTTCTTGTAC TTCAACATGTACAGCAAGATATAGGTACATACATTGTACACATCGAAACT ACATCAAAACCGAATTGGCAGGATTACTGCTTCTTTTTTTATGATGACTA CTGTGACCAACTTTGTACTACGTTCAGTATGTACAGTTCATTCCACATAG TATTCTTTGAAACAGGGTCTTGGTAATATTTCTTGCTCCAGGGAACTGTC CACAGATACTTCTCCTGCACAGCAGGCGGCAGTGGCTCCTTCCTCAAGGC GGACAAGCTCAATGCTGGATGTACCATGGTGGACGCCCTACTACAGCAAT ACGTGGCCATGGACGCTCCCCTTGTGGCGCCGGAGAATGTAATGCCTGAT GCCTATGCTGCAACAGCGAAGGGACACAAGAAGGTCAGAGTGAAGCAGTA G
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Coding sequence (CDS) from alignment at C-tenellus_contig6709:5342..6992+

>mRNA_C-tenellus_contig6709.6.1 ID=mRNA_C-tenellus_contig6709.6.1|Name=mRNA_C-tenellus_contig6709.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig6709:5342..6992+ (Choristocarpus tenellus KU2346)
ATGAGGGTACAAGATGGCAACGGCTTCAGGGCCACGGTTCGATACTTCGG
ACCAGTGTGTACTGCAAAGGACCCAGTGTCACCATGGATTGGTGTAGAGT
TCGATGACCCCACAAGAGGAAAGCATGACGGCGCTGTCACAAAGTCAGAT
GGAACTGTCCACAGATACTTCTCCTGCACAGCAGGCGGCAGTGGCTCCTT
CCTCAAGGCGGACAAGCTCAATGCTGGATGTACCATGGTGGACGCCCTAC
TACAGCAATACGTGGCCATGGACGCTCCCCTTGTGGCGCCGGAGAATGTA
ATGCCTGATGCCTATGCTGCAACAGCGAAGGGACACAAGAAGGTCAGAGT
GAAGCAGTAG
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