mRNA_C-tenellus_contig6709.6.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A6H5L3Q3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q3_9PHAE) HSP 1 Score: 180 bits (456), Expect = 3.300e-51 Identity = 84/118 (71.19%), Postives = 97/118 (82.20%), Query Frame = 1 Query: 1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKGHKKVR 354 IG RV DGNGFR TVRY GPVCTAKDP +PWIGVEFDDP RGKHDGAV K DG+ RYF+C GGSGSFLK K + G +M +AL QQYV M+APL+APEN++PDAYA+T+KG KKV+ Sbjct: 15 IGGRVVDGNGFRGTVRYVGPVCTAKDPTTPWIGVEFDDPARGKHDGAVEKPDGSSVRYFTCVNGGSGSFLKPSKFSTGISMAEALRQQYVDMNAPLLAPENLLPDAYASTSKGGKKVQ 132
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: D7G0Z3_ECTSI (Putative: beta-tubulin folding cofactor E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z3_ECTSI) HSP 1 Score: 177 bits (450), Expect = 4.440e-50 Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 1 Query: 1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKGHKK 348 IG RV DGNGFRATVRY GPVCTAK+P +PWIGVEFDDP RGKHDGAV K DG+ RYF+C GGSGSFLK K + G +M +AL QQYV M+APL+APEN++PDAYA+T+KG KK Sbjct: 15 IGGRVVDGNGFRATVRYVGPVCTAKEPTTPWIGVEFDDPARGKHDGAVEKPDGSSLRYFTCVNGGSGSFLKPGKFSTGISMAEALRQQYVDMNAPLLAPENLLPDAYASTSKGGKK 130
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A835YMA8_9STRA (Putative beta-tubulin folding cofactor E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMA8_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.690e-40 Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKG-HKKV 351 +G RVQD GFRATVRY GPVCT+KD + WIGVEFDD RGKHDGAV G + RY SCT GGSGSFLK K++AG + DAL YVA+DAPLVAP+N + YA T +G HK++ Sbjct: 11 LGQRVQDEKGFRATVRYIGPVCTSKDKDATWIGVEFDDAARGKHDGAVESEQGELVRYLSCTDGGSGSFLKPHKIDAGAALADALAAHYVAVDAPLVAPDNKLVGQYAQTVRGRHKQI 128
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S1XKZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKZ2_9STRA) HSP 1 Score: 131 bits (330), Expect = 8.360e-35 Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 1 Query: 4 GMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAK 336 G RVQD +G+R TVRY+GPV T+K+ + W+GVE+DD TRGKHDG+VT DG V RYF+ G SFLK K++AG + ++AL ++YV MDAPL+AP NV YA T K Sbjct: 35 GQRVQDADGYRGTVRYYGPVATSKNANANWVGVEWDDATRGKHDGSVTTKDGEVVRYFTVPEGKKASFLKPGKVDAGASFMEALGERYVGMDAPLLAPNNVFEGMYANTNK 145
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A4D9DAF6_9STRA (CAP-Gly domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAF6_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.770e-31 Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 1 Query: 1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGS--GSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKGHKK 348 +G RV D G R TVRY GPV +AKDP + W+GVE+DDP RGKHDG+V + G +HR+FSC G SFLK +KL+ G +++ L ++YVA DAPL AP V +AYA T++G +K Sbjct: 12 LGQRVADEEGNRGTVRYLGPVASAKDPGAAWVGVEWDDPGRGKHDGSVLTAAGKIHRHFSCLKPGPTCASFLKPNKLDRGVSLMAVLHKRYVAPDAPLEAPNQVFENAYANTSRGGQK 129
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A482RY02_9ARCH (CAP-Gly domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY02_9ARCH) HSP 1 Score: 114 bits (286), Expect = 2.540e-30 Identity = 51/117 (43.59%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPEN-VMPDAYAATAKGHKK 348 +G RV D +G++ATVRYFGPV A++ W+GVE+D+P+RGKHDG+ G +HRYF C A +GSF++ K+++G ++ AL ++YV++++ +A E ++PD++ +T+KG+ K Sbjct: 8 VGDRVHDADGYKATVRYFGPVMAAQNKEEVWLGVEWDNPSRGKHDGSCVDEHGIIHRYFRC-ASTAGSFIRPSKVSSGISLERALHERYVSLESEEIAQEGGMLPDSFVSTSKGNMK 123
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S3HIA2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIA2_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.470e-27 Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 1 Query: 1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAP-ENVMPDAYAATAKGHKK 348 +G RV D G++ATVRY GPV AK+ W GVE+D+PTRGKHDG+ S G +HRYF C G SGSF+K K+ G T + AL +YV +DAP +A + +P+ + +T +G++K Sbjct: 15 VGCRVVDSEGYKATVRYIGPVVGAKNQEEIWFGVEWDNPTRGKHDGSSVDSSGKLHRYFECVHG-SGSFIKPTKVAYGRTFLAALNDRYVNLDAPTIAEADGTVPNVFVSTLRGNQK 130
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S3ZSI4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSI4_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.210e-26 Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 1 Query: 1 IGMRVQDGNGFRATVRYFGPVCTA-KDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENV 306 +G R++D N FR T+RY GPV T+ KDP + W GVE+DD TRGKHDGAV K + RYF+C AG +GSF+K K++ G ++V+AL Q+YV +DAP+ AP V Sbjct: 16 VGTRIRDDNDFRGTIRYVGPVATSTKDPNATWYGVEWDDATRGKHDGAVEKDSQEI-RYFTCPAG-AGSFVKPKKVDRGSSLVEALRQKYVGLDAPVEAPLGV 116
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S1C881_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C881_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 7.670e-19 Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 Query: 1 IGMRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDGTVHRYFSCTAGGSGSFLKADKLNAGCTMVDALLQQY 267 +G RV D G ATV+Y GPV T+K + ++G+E+DD TRGK+DG+VT +DG V RYF+ T+ G GSFLK ++AG + V AL+ +Y Sbjct: 26 VGQRVLDKKGDAATVKYVGPVATSKSAETVYVGLEWDDETRGKNDGSVTTADGAVVRYFT-TSPGRGSFLKVALVDAGTSFVAALIDRY 113
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Match: A0A7S1FN11_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FN11_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.900e-18 Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1 Query: 10 RVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVT-KSDGTVHRYFSC---------TAG-------GSGSFLKADKLNAGCTMVDALLQQYVAMDAPLVAPENVMPDAYAATAKGHKK 348 RV+D +GF T Y GPV +AK+ ++GV +DDPTRGKHDG+V + + R+FS +AG GSF++ KL G ++ L +YV +DAPL+ NV+P A TA+G K Sbjct: 41 RVRDADGFLGTALYLGPVASAKNAEEVYVGVAWDDPTRGKHDGSVICRRTNRLIRHFSLADRAKHLSSSAGDPRPASVSGGSFVRPAKLRGGVSLTSVLSDRYVPLDAPLLTRNNVLPGRVAMTARGVPK 170 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6709.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig6709.6.1 >prot_C-tenellus_contig6709.6.1 ID=prot_C-tenellus_contig6709.6.1|Name=mRNA_C-tenellus_contig6709.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp MRVQDGNGFRATVRYFGPVCTAKDPVSPWIGVEFDDPTRGKHDGAVTKSDback to top mRNA from alignment at C-tenellus_contig6709:5342..6992+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig6709.6.1 ID=mRNA_C-tenellus_contig6709.6.1|Name=mRNA_C-tenellus_contig6709.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1651bp|location=Sequence derived from alignment at C-tenellus_contig6709:5342..6992+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig6709:5342..6992+ >mRNA_C-tenellus_contig6709.6.1 ID=mRNA_C-tenellus_contig6709.6.1|Name=mRNA_C-tenellus_contig6709.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig6709:5342..6992+ (Choristocarpus tenellus KU2346)back to top |