mRNA_C-tenellus_contig6704.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6704.3.1
Unique NamemRNA_C-tenellus_contig6704.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6704.3.1 vs. uniprot
Match: D8LLV3_ECTSI (DUF3730 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLV3_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 3.760e-81
Identity = 200/562 (35.59%), Postives = 295/562 (52.49%), Query Frame = 1 
Query:   46 DKGTIDTGEAKRQLVSALEVVVSRIDSGRGGES-------LNGIIHALVKGIVYLLRIEVGSKTDGEVQDTLGS----------------VLVMGPGELYPPVAHEALCFLPRPNTTSAEVVHVVCPLAAAILIQPVYVHLRNGFLLKLSAALAMAHEHIKYALVMLQIELQHHTATHTAAHVDIVGGWSWTLANTSLSLQEEITWERASAMVVSNILCLVQDLQECDLPIMPLLSALQPIVAEDPLCLAEDIAFLGACALQSSCVHERSTLLSMIGEVVGALKDQREGYNPHCHAKNLSDPEDTGQCTTLTEWSISVLEYPVVSLAATGNAPAKAILPLIEALQMKGGCWAHKKA-----GEAEPSAGSRYSECPWKCTTFVLALRRLCVIKDNEEALLCACRQLEGRAIIEGINREDKYMHGRSRAVEGHEGQGKSVGKDTGG---LELGLCAIVPLLHHPSGLVQMAACQVVVAIARVMPLLGVRLLPLMLHTLKKCGEVGDAHG-VDAVLRVLPELGKHRVASKAVSMVIHGLARAQLAPVQATGLRLAATLWEINSR 1635
            D   ID  E+  +LV  L+  ++R +  R  +         +G+   L + +V + R+        E Q T G                 +L M  G L+P ++HE  CFL R NT   E V VVCPLA+A+L+QP Y +LR+GF+LKLS A A A + +K  L++LQ EL    A HT AH D+  GW  +L NT++SL  +  W+RAS  +    + L+ + +   +PI P+LS++Q +VA DPLCLA+++AFLG  ALQS C+ ER  LL ++G  + A+   R  ++P    K + D  D      +  WS+  L YP+VS+AATGN  +  +LPL+EA    GG ++  K         E    S  +E     +   L +RRL V+  +++A++ AC  L+ RA                  + G  G     G+D      LE GLC + PLL         A C V+VA+ R +P LGVRLLP +L+ ++K G V    G V  +L +LPELG H++++K V+ VI  LA+A    V+  G+RL A L ++N R
Sbjct:   71 DSSGIDLIESGDELVRHLKAAMAREEDQRNQQGDGARHNQEHGVTQCLTRCLVAISRLSARR----EAQPTCGGEKGVWAGVAGNGVSAMLLSMNRGLLFPALSHETTCFLSRLNTDPREAVRVVCPLASALLLQPEYANLRSGFMLKLSMASATASDAVKLCLLILQAELLVFGAMHTGAHADVAAGWFCSLVNTAVSLDSDPAWDRASRALAGVGVFLLSEFRGRGVPITPVLSSMQFLVAADPLCLADEVAFLGITALQSHCIDEREALLDIVGRTLSAMAP-RVFHDP----KVIPDNVDV----RVRAWSLETLVYPLVSMAATGNPVSANVLPLLEAAL--GGVYSRSKFETMADARVEGDRSSAGNEHLRLSSPVALGIRRLGVLDGDQQAMVVACMGLKQRA----------------NDLSGSNGGVTDAGRDASAVADLECGLCLLAPLLLQQHEQTHEAVCTVLVAVVRAVPSLGVRLLPFVLYGIRKLGGVASEGGSVARLLHLLPELGAHKLSAKPVAAVIQALAKAPQQAVRGLGMRLVAALVQVNPR 601
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6704.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLV3_ECTSI3.760e-8135.59DUF3730 domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6704contigC-tenellus_contig6704:4657..6812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1638
Hectar predicted targeting categoryother localisation
Exons3
Cds size1638
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789986.8006694-CDS-C-tenellus_contig6704:4656..50441680789986.8006694-CDS-C-tenellus_contig6704:4656..5044Choristocarpus tenellus KU2346CDSC-tenellus_contig6704 4657..5044 +
1680789986.810115-CDS-C-tenellus_contig6704:5197..54611680789986.810115-CDS-C-tenellus_contig6704:5197..5461Choristocarpus tenellus KU2346CDSC-tenellus_contig6704 5198..5461 +
1680789986.8188462-CDS-C-tenellus_contig6704:5826..68121680789986.8188462-CDS-C-tenellus_contig6704:5826..6812Choristocarpus tenellus KU2346CDSC-tenellus_contig6704 5827..6812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6704.3.1prot_C-tenellus_contig6704.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6704 4657..6812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6704.3.1

>prot_C-tenellus_contig6704.3.1 ID=prot_C-tenellus_contig6704.3.1|Name=mRNA_C-tenellus_contig6704.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=546bp
MLIPFRPPGIEALVGDKGTIDTGEAKRQLVSALEVVVSRIDSGRGGESLN
GIIHALVKGIVYLLRIEVGSKTDGEVQDTLGSVLVMGPGELYPPVAHEAL
CFLPRPNTTSAEVVHVVCPLAAAILIQPVYVHLRNGFLLKLSAALAMAHE
HIKYALVMLQIELQHHTATHTAAHVDIVGGWSWTLANTSLSLQEEITWER
ASAMVVSNILCLVQDLQECDLPIMPLLSALQPIVAEDPLCLAEDIAFLGA
CALQSSCVHERSTLLSMIGEVVGALKDQREGYNPHCHAKNLSDPEDTGQC
TTLTEWSISVLEYPVVSLAATGNAPAKAILPLIEALQMKGGCWAHKKAGE
AEPSAGSRYSECPWKCTTFVLALRRLCVIKDNEEALLCACRQLEGRAIIE
GINREDKYMHGRSRAVEGHEGQGKSVGKDTGGLELGLCAIVPLLHHPSGL
VQMAACQVVVAIARVMPLLGVRLLPLMLHTLKKCGEVGDAHGVDAVLRVL
PELGKHRVASKAVSMVIHGLARAQLAPVQATGLRLAATLWEINSR*
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mRNA from alignment at C-tenellus_contig6704:4657..6812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6704.3.1 ID=mRNA_C-tenellus_contig6704.3.1|Name=mRNA_C-tenellus_contig6704.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2156bp|location=Sequence derived from alignment at C-tenellus_contig6704:4657..6812+ (Choristocarpus tenellus KU2346)
ATGTTGATCCCATTCCGTCCTCCAGGAATTGAGGCCCTGGTGGGGGACAA
AGGAACAATCGACACTGGCGAGGCCAAACGCCAGCTTGTATCGGCGCTGG
AAGTGGTCGTCTCGAGAATTGATAGCGGTCGTGGAGGAGAATCTCTCAAT
GGAATTATACATGCTCTCGTGAAAGGAATCGTATATTTGCTTCGTATTGA
AGTGGGCTCCAAGACGGATGGAGAGGTTCAAGACACACTTGGGAGTGTGC
TGGTTATGGGGCCTGGAGAACTCTACCCACCCGTGGCACACGAGGCATTG
TGCTTTTTACCCAGACCAAACACCACCTCTGCGGAAGTTGTGCACGTTGT
TTGTCCCCTTGCAGCAGCGATTCTGATCCAGCCCGTATGTGAGTAATATG
ACGGAACGTTGCAAATCATTCTCCGTTCACTCTGTCCAAGACATTTCCTG
CAATCCCGTGCCTGCACGGTTCTCTTTCTATATCTGTGTGTCTTGTTTGT
CTGTAAGTGCACTCACCCACCCGCTCTTATGTTATAAGCAGACGTCCATC
TTAGGAACGGGTTCTTATTGAAACTGTCAGCAGCCTTGGCTATGGCCCAC
GAGCATATTAAGTATGCCCTAGTCATGCTACAGATCGAGCTTCAACATCA
CACTGCCACTCACACCGCGGCCCATGTCGATATCGTGGGGGGTTGGAGCT
GGACTCTAGCCAACACCAGCCTGTCTCTTCAGGAAGAAATAACCTGGGAA
AGAGCCTCAGCAATGGTTGTTAGCAATATACTGTGCCTAGTCCAGGATTT
ACAAGGTTAGCACTGCCGACCCATCGATCAAAATTCTCTGTATGTCGATA
TCGTGGGGGGTTGGAGCTGGACTCTAGCCAACACCAGCCTGTCTCTTCAG
GAAGAAATAACCTGGGAAAGAGCCTCAGCAATGGTTGTTAGCAATATACT
GTGCCTAGTCCAGGATTTACAAGGTTAGCACTGCCGACCCATCGATCAAA
ATTCTCTGTGATTTCCGTAAGCAAAATATCCATCCCCATTCTCTTTATAT
TTTCTGGTCTTTGGTCGCCCCTCGGTCGCAATTCTGACACCATTCCCTAC
CCTCCCCCGGCTCCCAACTCTACATTTCCCTCCTTTACCAAATGGGGACT
TTCCACGCACCTCTATTCAGAATGTGACCTGCCCATCATGCCTCTCCTGT
CTGCACTTCAGCCAATTGTGGCAGAAGACCCACTGTGTTTGGCAGAAGAT
ATTGCATTCCTTGGTGCCTGTGCGTTGCAGAGCTCCTGTGTTCATGAGCG
GTCTACCCTGCTGTCTATGATTGGTGAGGTGGTAGGGGCATTAAAGGACC
AAAGAGAAGGGTACAACCCCCATTGCCATGCCAAGAACCTTTCTGATCCT
GAGGATACTGGGCAGTGCACGACCCTTACAGAGTGGTCTATATCTGTGCT
GGAATACCCAGTAGTGAGCCTAGCTGCCACTGGCAATGCCCCTGCCAAGG
CTATCCTCCCACTGATCGAAGCGTTACAGATGAAAGGGGGATGCTGGGCA
CACAAAAAGGCAGGAGAAGCAGAACCATCAGCAGGTAGTCGTTACAGTGA
ATGTCCTTGGAAGTGCACCACCTTTGTGCTCGCTCTTCGGAGGCTCTGTG
TAATAAAGGACAATGAGGAGGCCTTGCTCTGTGCCTGCAGGCAGCTGGAG
GGAAGAGCGATAATCGAAGGCATCAATCGAGAGGACAAGTACATGCACGG
GAGAAGTAGGGCTGTGGAGGGGCACGAGGGTCAGGGGAAGAGTGTGGGGA
AGGACACAGGGGGGCTGGAGCTGGGGCTGTGTGCTATTGTACCGTTGTTG
CATCACCCTTCAGGACTTGTTCAGATGGCTGCATGTCAAGTTGTTGTAGC
TATTGCAAGGGTAATGCCTTTGTTAGGAGTCCGTCTACTTCCTCTTATGC
TTCACACCCTGAAAAAGTGTGGGGAAGTTGGGGATGCTCATGGTGTGGAT
GCTGTCCTTCGTGTCCTGCCTGAGCTCGGGAAGCATCGGGTGGCTTCCAA
GGCGGTGAGCATGGTGATCCATGGTCTTGCAAGGGCACAACTAGCCCCTG
TCCAGGCTACTGGTCTCCGTCTTGCTGCCACTCTGTGGGAGATCAACTCC
AGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig6704:4657..6812+

>mRNA_C-tenellus_contig6704.3.1 ID=mRNA_C-tenellus_contig6704.3.1|Name=mRNA_C-tenellus_contig6704.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1638bp|location=Sequence derived from alignment at C-tenellus_contig6704:4657..6812+ (Choristocarpus tenellus KU2346)
ATGTTGATCCCATTCCGTCCTCCAGGAATTGAGGCCCTGGTGGGGGACAA
AGGAACAATCGACACTGGCGAGGCCAAACGCCAGCTTGTATCGGCGCTGG
AAGTGGTCGTCTCGAGAATTGATAGCGGTCGTGGAGGAGAATCTCTCAAT
GGAATTATACATGCTCTCGTGAAAGGAATCGTATATTTGCTTCGTATTGA
AGTGGGCTCCAAGACGGATGGAGAGGTTCAAGACACACTTGGGAGTGTGC
TGGTTATGGGGCCTGGAGAACTCTACCCACCCGTGGCACACGAGGCATTG
TGCTTTTTACCCAGACCAAACACCACCTCTGCGGAAGTTGTGCACGTTGT
TTGTCCCCTTGCAGCAGCGATTCTGATCCAGCCCGTATACGTCCATCTTA
GGAACGGGTTCTTATTGAAACTGTCAGCAGCCTTGGCTATGGCCCACGAG
CATATTAAGTATGCCCTAGTCATGCTACAGATCGAGCTTCAACATCACAC
TGCCACTCACACCGCGGCCCATGTCGATATCGTGGGGGGTTGGAGCTGGA
CTCTAGCCAACACCAGCCTGTCTCTTCAGGAAGAAATAACCTGGGAAAGA
GCCTCAGCAATGGTTGTTAGCAATATACTGTGCCTAGTCCAGGATTTACA
AGAATGTGACCTGCCCATCATGCCTCTCCTGTCTGCACTTCAGCCAATTG
TGGCAGAAGACCCACTGTGTTTGGCAGAAGATATTGCATTCCTTGGTGCC
TGTGCGTTGCAGAGCTCCTGTGTTCATGAGCGGTCTACCCTGCTGTCTAT
GATTGGTGAGGTGGTAGGGGCATTAAAGGACCAAAGAGAAGGGTACAACC
CCCATTGCCATGCCAAGAACCTTTCTGATCCTGAGGATACTGGGCAGTGC
ACGACCCTTACAGAGTGGTCTATATCTGTGCTGGAATACCCAGTAGTGAG
CCTAGCTGCCACTGGCAATGCCCCTGCCAAGGCTATCCTCCCACTGATCG
AAGCGTTACAGATGAAAGGGGGATGCTGGGCACACAAAAAGGCAGGAGAA
GCAGAACCATCAGCAGGTAGTCGTTACAGTGAATGTCCTTGGAAGTGCAC
CACCTTTGTGCTCGCTCTTCGGAGGCTCTGTGTAATAAAGGACAATGAGG
AGGCCTTGCTCTGTGCCTGCAGGCAGCTGGAGGGAAGAGCGATAATCGAA
GGCATCAATCGAGAGGACAAGTACATGCACGGGAGAAGTAGGGCTGTGGA
GGGGCACGAGGGTCAGGGGAAGAGTGTGGGGAAGGACACAGGGGGGCTGG
AGCTGGGGCTGTGTGCTATTGTACCGTTGTTGCATCACCCTTCAGGACTT
GTTCAGATGGCTGCATGTCAAGTTGTTGTAGCTATTGCAAGGGTAATGCC
TTTGTTAGGAGTCCGTCTACTTCCTCTTATGCTTCACACCCTGAAAAAGT
GTGGGGAAGTTGGGGATGCTCATGGTGTGGATGCTGTCCTTCGTGTCCTG
CCTGAGCTCGGGAAGCATCGGGTGGCTTCCAAGGCGGTGAGCATGGTGAT
CCATGGTCTTGCAAGGGCACAACTAGCCCCTGTCCAGGCTACTGGTCTCC
GTCTTGCTGCCACTCTGTGGGAGATCAACTCCAGGTGA
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