mRNA_C-tenellus_contig11618.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11618.2.1
Unique NamemRNA_C-tenellus_contig11618.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11618.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11618contigC-tenellus_contig11618:1178..1873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8Y9
PFAMsSHR-BD,VPS13_mid_rpt
Model size431
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.79e-17
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size429
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.7923703-CDS-C-tenellus_contig11618:1179..14561680789186.7923703-CDS-C-tenellus_contig11618:1179..1456Choristocarpus tenellus KU2346CDSC-tenellus_contig11618 1180..1456 -
1680789186.8031418-CDS-C-tenellus_contig11618:1721..18731680789186.8031418-CDS-C-tenellus_contig11618:1721..1873Choristocarpus tenellus KU2346CDSC-tenellus_contig11618 1722..1873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11618.2.1prot_C-tenellus_contig11618.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11618 1180..1873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11618.2.1

>prot_C-tenellus_contig11618.2.1 ID=prot_C-tenellus_contig11618.2.1|Name=mRNA_C-tenellus_contig11618.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=143bp
AARHRRASRRGREGDAEWARRSVEAAAAARASSQRGKPFAVRLTFVAHDS
RHIFGAGGDPPKFLAAATSLAMGTLRKGQGPDRRLLEILRRDRERRATFA
LDRVVTVVSPGGLLSMVSTAHTLIRASQCPTEVHTSQNGASAG
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mRNA from alignment at C-tenellus_contig11618:1178..1873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11618.2.1 ID=mRNA_C-tenellus_contig11618.2.1|Name=mRNA_C-tenellus_contig11618.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=696bp|location=Sequence derived from alignment at C-tenellus_contig11618:1178..1873- (Choristocarpus tenellus KU2346)
GCAGCACGACACCGCCGGGCATCCCGAAGGGGCCGGGAGGGGGATGCTGA
GTGGGCCCGGAGGAGTGTAGAGGCGGCAGCAGCGGCAAGGGCATCGAGTC
AGAGGGGGAAGCCCTTCGCTGTCCGGCTGACCTTTGTGGCTCATGATTCT
AGGTGAGAGTGACAGGTGTGTGTCTGTGGCGGGGATAAGAGTGGTGGGTG
GCTCTAGAGCTGTTTTAGTTCTCCTTGGATTTTGATTGCGTTTTTCTTTT
TGTCTGTTAGTAACGTCTTATTTTATTTTTCGTTGAGGTGATGACAGTTC
CCGCACCAGACTCTCCCTACCCCCATTCCCCCACCCACTTCTCACTTCCC
ACTTCTCACTTCCCACTTCCCACTTCTCTCCTCCTGATCCCTGGCCATGC
CCGCTTAACTCTCCTAGGCACATCTTTGGGGCGGGGGGAGATCCCCCCAA
GTTCCTGGCGGCAGCAACATCGTTAGCAATGGGCACCTTACGCAAAGGGC
AAGGTCCCGACCGTCGCCTGCTGGAGATCCTACGCAGAGACCGTGAGCGA
CGAGCAACATTTGCCCTGGATCGGGTTGTCACTGTGGTGTCTCCCGGGGG
ACTCCTGTCTATGGTGTCCACTGCCCACACGCTGATAAGGGCTTCACAGT
GTCCTACAGAGGTGCATACTTCACAAAATGGAGCTTCAGCAGGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig11618:1178..1873-

>mRNA_C-tenellus_contig11618.2.1 ID=mRNA_C-tenellus_contig11618.2.1|Name=mRNA_C-tenellus_contig11618.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=429bp|location=Sequence derived from alignment at C-tenellus_contig11618:1178..1873- (Choristocarpus tenellus KU2346)
GCAGCACGACACCGCCGGGCATCCCGAAGGGGCCGGGAGGGGGATGCTGA
GTGGGCCCGGAGGAGTGTAGAGGCGGCAGCAGCGGCAAGGGCATCGAGTC
AGAGGGGGAAGCCCTTCGCTGTCCGGCTGACCTTTGTGGCTCATGATTCT
AGGCACATCTTTGGGGCGGGGGGAGATCCCCCCAAGTTCCTGGCGGCAGC
AACATCGTTAGCAATGGGCACCTTACGCAAAGGGCAAGGTCCCGACCGTC
GCCTGCTGGAGATCCTACGCAGAGACCGTGAGCGACGAGCAACATTTGCC
CTGGATCGGGTTGTCACTGTGGTGTCTCCCGGGGGACTCCTGTCTATGGT
GTCCACTGCCCACACGCTGATAAGGGCTTCACAGTGTCCTACAGAGGTGC
ATACTTCACAAAATGGAGCTTCAGCAGGG
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