mRNA_C-tenellus_contig11022.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11022.3.1
Unique NamemRNA_C-tenellus_contig11022.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11022.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11022contigC-tenellus_contig11022:1036..2640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size495
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001560.1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.6076608-CDS-C-tenellus_contig11022:1035..13151680789159.6076608-CDS-C-tenellus_contig11022:1035..1315Choristocarpus tenellus KU2346CDSC-tenellus_contig11022 1036..1315 -
1680789159.616924-CDS-C-tenellus_contig11022:1518..16551680789159.616924-CDS-C-tenellus_contig11022:1518..1655Choristocarpus tenellus KU2346CDSC-tenellus_contig11022 1519..1655 -
1680789159.627058-CDS-C-tenellus_contig11022:2562..26401680789159.627058-CDS-C-tenellus_contig11022:2562..2640Choristocarpus tenellus KU2346CDSC-tenellus_contig11022 2563..2640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11022.3.1prot_C-tenellus_contig11022.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11022 1036..2640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11022.3.1

>prot_C-tenellus_contig11022.3.1 ID=prot_C-tenellus_contig11022.3.1|Name=mRNA_C-tenellus_contig11022.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=165bp
MEESGCDNECETEEWKGSRPPTDSLQTESEPTAEDEATLLFSIALYPPVE
GSKLSLEYYHRCACHFVSHMHSLFGKARFFVHVDASLDEELLREIDRASG
GMSRFLPFSVIGRVGNLVEPGLAEGWGPSAWAGIWAGGAAAAGAGVEAFP
PGSGDAVSGLESKAA
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mRNA from alignment at C-tenellus_contig11022:1036..2640-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11022.3.1 ID=mRNA_C-tenellus_contig11022.3.1|Name=mRNA_C-tenellus_contig11022.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1605bp|location=Sequence derived from alignment at C-tenellus_contig11022:1036..2640- (Choristocarpus tenellus KU2346)
ATGGAGGAGAGTGGGTGCGATAACGAGTGCGAAACGGAGGAGTGGAAAGG
ATCTCGCCCACCAACGGATTCTCTCCAGGTCAGAGCATGCAACAATGGAG
TGGTGTATGACGGTGGTGTACGAAGGAGGCCAATTAGACATCGCGGCTTA
AATCTAGTTTGAATGTCTTGTGTGCCCTGCAAAGATGCGTACCTCATTGT
CTACGTTGATTCATTGATCTTATCTCGTCCGTAAGATATACGGGGCTCTT
TCGCTAAAAAATCGTTGACTTCCCTGTAACATTGCCCTTCTATTTGAGAC
TGTGGACAATTTGGATATAGCATTTGGGGGATCCGTTCAAGTTTGTCTAT
GAAGGCATTCAGTATCCCGACGCCATCCTTCTCGTGGCTTACTTGCGATG
ATTACGATACCATCCCAGAGTATCCAAACATGATTATACTTAATTTAGCA
CAGGTTGAGATCTTTTCCAACTTGCGAGGCCTTCGTACCGATCGGTCCTA
AATTGCCATTGCTTGCCTATTGTGTTCAAGGGCTCGCAAGGTGTATCATC
ATCCTCAACTTTGTTCAAGCGGGTCAATTTCAGTACTCCTGTTTGGGGTG
AAAATGTTAGTCTGTTGCCCAAATCATGCCAAGTCCAAATTCGAACGAAT
GGTGGACTCAACAAACAACTCCAGTATAAAGGTTGACTATGGCGAGACGT
CCAGTAGGCGACATATTTCCGTCGTTCTTTGAAATGTCCCTGCCTCAGGA
TGACGGGTACTCACTCCTCATCTGGAGTTCGGGGGAATTGACGACGCTGG
AACCTGAAAAATGGCCAAGCGATATCCCCTCAGGGATCACGTTATCGATC
AAGTCTATCAGGAAGGAAACACGCGTTTAAAAAACGTTTTGATTGAACCC
ATCTTGATTTTGAAATGCCACGCTTCTTACCTAACACAACTCCCACCTTA
ACGTCCCCACCAATGGGAATGTGCTCTCTCCGCAGACCGAGTCTGAACCC
ACCGCGGAAGATGAAGCCACGCTCCTGTTCTCCATTGCCCTCTACCCTCC
AGTGGAGGGCTCCAAACTGTCCTTGGAGTACTACCACCGCTGTGCTTGTC
ATTTTGTATCTCACATGCACAGGTGAGAGGCTGTAGGCTGTGCATATTAT
GGAGGGTGAAATTAAAACTCCAAGAAGGCAGCATGATGCAGGTATTGCAC
TACTTCGTAGTGGAACTGTTCCCTTCTCATTAACCGCGCACATTCTACCA
ACCTTTCCTATGTATACACACACACATCGCCCTATTCTCTCAAACACTAA
TTTTGCAGTGTTTCTGCCCTCACAGCTTGTTTGGAAAGGCCAGGTTCTTT
GTTCACGTTGACGCCTCCCTCGACGAAGAACTCCTGCGTGAGATAGACAG
GGCCAGCGGTGGGATGAGCAGGTTCCTGCCCTTCTCAGTGATCGGGAGGG
TTGGCAATCTGGTGGAGCCTGGCTTGGCGGAAGGCTGGGGACCCAGTGCG
TGGGCAGGGATCTGGGCAGGGGGTGCAGCTGCCGCTGGAGCAGGTGTAGA
GGCCTTTCCACCAGGCAGTGGGGATGCAGTGTCAGGGCTTGAGTCCAAGG
CAGCA
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Coding sequence (CDS) from alignment at C-tenellus_contig11022:1036..2640-

>mRNA_C-tenellus_contig11022.3.1 ID=mRNA_C-tenellus_contig11022.3.1|Name=mRNA_C-tenellus_contig11022.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=495bp|location=Sequence derived from alignment at C-tenellus_contig11022:1036..2640- (Choristocarpus tenellus KU2346)
ATGGAGGAGAGTGGGTGCGATAACGAGTGCGAAACGGAGGAGTGGAAAGG
ATCTCGCCCACCAACGGATTCTCTCCAGACCGAGTCTGAACCCACCGCGG
AAGATGAAGCCACGCTCCTGTTCTCCATTGCCCTCTACCCTCCAGTGGAG
GGCTCCAAACTGTCCTTGGAGTACTACCACCGCTGTGCTTGTCATTTTGT
ATCTCACATGCACAGCTTGTTTGGAAAGGCCAGGTTCTTTGTTCACGTTG
ACGCCTCCCTCGACGAAGAACTCCTGCGTGAGATAGACAGGGCCAGCGGT
GGGATGAGCAGGTTCCTGCCCTTCTCAGTGATCGGGAGGGTTGGCAATCT
GGTGGAGCCTGGCTTGGCGGAAGGCTGGGGACCCAGTGCGTGGGCAGGGA
TCTGGGCAGGGGGTGCAGCTGCCGCTGGAGCAGGTGTAGAGGCCTTTCCA
CCAGGCAGTGGGGATGCAGTGTCAGGGCTTGAGTCCAAGGCAGCA
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