mRNA_C-tenellus_contig11009.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11009.2.1
Unique NamemRNA_C-tenellus_contig11009.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: UPI001CCC0483 (ABC transporter transmembrane domain-containing protein n=2 Tax=Archangiaceae TaxID=39 RepID=UPI001CCC0483)

HSP 1 Score: 120 bits (300), Expect = 8.500e-27
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGRPG 282
            YP+ PDVPVLQG  L +EPGEVV I G SG G+ST++ +L  +Y+P  G + +DGMD+K LDP WLR Q+ VV Q P++F+ +I DNI YG+ G
Sbjct:  355 YPARPDVPVLQGIQLNIEPGEVVAIVGPSGAGKSTIAAMLGRLYDPEGGHILLDGMDLKTLDPEWLRQQIGVVAQEPLLFSSSIADNIRYGKVG 448
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BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: A0A7I8KYD6_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KYD6_SPIIN)

HSP 1 Score: 118 bits (296), Expect = 4.940e-26
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGRPG 282
            YP+ P  PVL+ F+L V  G  +G+ G+SGCG+ST+  L+   Y+  RGVV++DG+D++ LD RWLRG +A+VGQ P +F+GTIRDNI +G+PG
Sbjct:  986 YPTRPQCPVLRDFSLQVNTGTSMGLVGSSGCGKSTVIGLIQRFYDVGRGVVKIDGVDIRQLDLRWLRGSMALVGQEPAIFSGTIRDNIIFGKPG 1079
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BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: A0A085WV65_9DELT (Lipid A export ATP-binding/permease protein MsbA n=1 Tax=Hyalangium minutum TaxID=394096 RepID=A0A085WV65_9DELT)

HSP 1 Score: 117 bits (293), Expect = 7.570e-26
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGR 276
            YPS PDVPVLQG  L +EPGE V I G SG G+ST++ LL  +Y+P  G + +DG D+K LDP WLR Q+ VV Q P++F+ +I DNI YGR
Sbjct:  358 YPSRPDVPVLQGIELNIEPGEAVAIVGPSGSGKSTIASLLGRLYDPQGGHILLDGKDLKALDPEWLRQQIGVVAQEPLLFSSSIADNIRYGR 449
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BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: A0A822FNZ2_9NEOB ((mimic poison frog) hypothetical protein (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822FNZ2_9NEOB)

HSP 1 Score: 108 bits (269), Expect = 1.090e-25
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGRPG 282
            YPS PDV VL G NL V  G+ + + G SGCG+ST+  LL  +Y+P+ G V +DG D + L+ +WLR  + VVGQ PV+F  TIR+NI YGR G
Sbjct:   30 YPSRPDVQVLLGLNLKVPAGKTIALVGMSGCGKSTVIQLLQRLYDPTEGEVTLDGHDTRSLNVKWLRENIGVVGQEPVLFGTTIRENIRYGRDG 123
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BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: A0A7S0R756_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R756_9CHLO)

HSP 1 Score: 114 bits (284), Expect = 1.110e-25
Identity = 48/94 (51.06%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGRPG 282
            YP+ P+ P+ QG +LTVE G  V + GASG G+ST   L++  Y+P+ G V +DG+D++ L+ +WLR Q+ +VGQ PV+F+GTI +NIAYG+PG
Sbjct:  107 YPNRPEAPIFQGLDLTVEAGHTVALVGASGSGKSTTVQLVERFYDPTSGTVSLDGVDLRDLNLKWLRQQIGLVGQEPVLFSGTIAENIAYGKPG 200
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BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: A0A2T7PC87_POMCA (Uncharacterized protein n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PC87_POMCA)

HSP 1 Score: 117 bits (293), Expect = 1.250e-25
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGR 276
            YP+ PD+PVL G +L V+PG+ VG+ GASGCG+ST   LL   Y+P +G V VDG D+K L+ +WLR Q+ VV Q PV+FA TI +NI YG+
Sbjct:  458 YPARPDIPVLNGLDLRVDPGQTVGLVGASGCGKSTTIQLLQRFYDPEKGQVAVDGHDIKTLNLKWLRDQIGVVSQEPVLFAATIAENIRYGK 549
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BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: A0A6A0GQ75_HYAAZ (ABC transporter domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GQ75_HYAAZ)

HSP 1 Score: 115 bits (287), Expect = 1.750e-25
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGRPG 282
            YPS  DVPVLQG +L V+PG+ V I G+SGCG+ST   LL   Y+PS+G V +D +DV+ L+  WLR Q+ VVGQ PV+FA TI +NI YGR G
Sbjct:  148 YPSRCDVPVLQGLSLKVQPGQTVAIVGSSGCGKSTCIQLLQRFYDPSQGKVTLDSVDVRSLNIGWLRDQIGVVGQEPVLFATTIEENIRYGRDG 241
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BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: UPI001F501C3C (multidrug resistance protein homolog 49-like n=3 Tax=Schistocerca TaxID=7008 RepID=UPI001F501C3C)

HSP 1 Score: 116 bits (290), Expect = 3.110e-25
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGR 276
            YPS PDVPVLQG NL ++ GE V + G+SGCG+ST+  L+  +Y+P +G V +DG DVK L+  WLR Q+ VVGQ PV+FA TI +NI YGR
Sbjct:  459 YPSRPDVPVLQGLNLRIKHGETVALVGSSGCGKSTVIQLIQRLYDPVQGKVFLDGTDVKELNVNWLRNQIGVVGQEPVLFATTIGENIRYGR 550
[Close]
BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: UPI001C2093B0 (multidrug resistance protein homolog 49-like n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C2093B0)

HSP 1 Score: 115 bits (289), Expect = 4.200e-25
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    1 YPSSPDVPVLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGRP 279
            YPS P+V VLQGF+L ++PGE V + GASGCG+ST+  LL  +Y+P  GVV++DG ++K L+  WLR  + VVGQ PV+F GTI DNIA G P
Sbjct:  405 YPSRPNVKVLQGFSLHIKPGECVALVGASGCGKSTILQLLQRLYDPHAGVVKLDGKNIKNLNLSWLRSSLGVVGQEPVLFRGTIHDNIAIGCP 497
[Close]
BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Match: A0A7S0STZ5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0STZ5_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 5.250e-25
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   25 VLQGFNLTVEPGEVVGITGASGCGESTLSFLLDHMYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGRPGTCGVFV 300
            VL GF+L++ PGEV  + G SG G+ST+  LL+  Y+P RG VEVDG +V  LD RWLR  +  V Q+P +F GT+ +NIAY RPG  G  V
Sbjct:    6 VLDGFSLSLRPGEVFALVGPSGGGKSTVGALLERFYDPDRGSVEVDGTEVSALDLRWLRSNIGAVSQDPTIFEGTVGENIAYARPGASGAEV 97
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11009.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CCC04838.500e-2755.32ABC transporter transmembrane domain-containing pr... [more]
A0A7I8KYD6_SPIIN4.940e-2653.19Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A085WV65_9DELT7.570e-2656.52Lipid A export ATP-binding/permease protein MsbA n... [more]
A0A822FNZ2_9NEOB1.090e-2552.13(mimic poison frog) hypothetical protein (Fragment... [more]
A0A7S0R756_9CHLO1.110e-2551.06Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A2T7PC87_POMCA1.250e-2555.43Uncharacterized protein n=3 Tax=Pomacea canalicula... [more]
A0A6A0GQ75_HYAAZ1.750e-2557.45ABC transporter domain-containing protein n=1 Tax=... [more]
UPI001F501C3C3.110e-2557.61multidrug resistance protein homolog 49-like n=3 T... [more]
UPI001C2093B04.200e-2556.99multidrug resistance protein homolog 49-like n=1 T... [more]
A0A7S0STZ5_9CHLO5.250e-2552.17Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11009contigC-tenellus_contig11009:2894..4041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4006.Lus10013178
PFAMsABC_membrane,ABC_tran
Model size911
Max annot lvl35493|Streptophyta
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0007275,GO:0008150,GO:0008361,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009637,GO:0009639,GO:0009640,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009908,GO:0009914,GO:0009926,GO:0009958,GO:0009966,GO:0009987,GO:0010033,GO:0010218,GO:0010315,GO:0010329,GO:0010540,GO:0010541,GO:0010646,GO:0010817,GO:0010928,GO:0015562,GO:0016020,GO:0016043,GO:0022414,GO:0022622,GO:0022857,GO:0023051,GO:0032501,GO:0032502,GO:0032535,GO:0042221,GO:0043473,GO:0043476,GO:0043478,GO:0043479,GO:0043480,GO:0043481,GO:0044464,GO:0048364,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048527,GO:0048528,GO:0048583,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0048859,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0080161,GO:0090066,GO:0090567,GO:0090691,GO:0090696,GO:0099402
Exons2
Evalue4.54e-14
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota,37PGZ@33090|Viridiplantae,3GEHD@35493|Streptophyta,4JDDH@91835|fabids
EC3.6.3.44
DescriptionABC transporter B family member
Cds size177
COG categoryQ
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.1539876-UTR-C-tenellus_contig11009:2893..35011680789159.1539876-UTR-C-tenellus_contig11009:2893..3501Choristocarpus tenellus KU2346UTRC-tenellus_contig11009 2894..3501 -
1680789159.1832664-UTR-C-tenellus_contig11009:3678..37051680789159.1832664-UTR-C-tenellus_contig11009:3678..3705Choristocarpus tenellus KU2346UTRC-tenellus_contig11009 3679..3705 -
1680789159.2019393-UTR-C-tenellus_contig11009:3942..40411680789159.2019393-UTR-C-tenellus_contig11009:3942..4041Choristocarpus tenellus KU2346UTRC-tenellus_contig11009 3943..4041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.1670787-CDS-C-tenellus_contig11009:3501..36781680789159.1670787-CDS-C-tenellus_contig11009:3501..3678Choristocarpus tenellus KU2346CDSC-tenellus_contig11009 3502..3678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11009.2.1prot_C-tenellus_contig11009.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11009 3502..3678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11009.2.1

>prot_C-tenellus_contig11009.2.1 ID=prot_C-tenellus_contig11009.2.1|Name=mRNA_C-tenellus_contig11009.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=59bp
MYEPSRGVVEVDGMDVKVLDPRWLRGQVAVVGQNPVVFAGTIRDNIAYGR
PGTCGVFV*
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mRNA from alignment at C-tenellus_contig11009:2894..4041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11009.2.1 ID=mRNA_C-tenellus_contig11009.2.1|Name=mRNA_C-tenellus_contig11009.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1148bp|location=Sequence derived from alignment at C-tenellus_contig11009:2894..4041- (Choristocarpus tenellus KU2346)
TACCCTTCCAGTCCGGATGTGCCTGTCCTTCAAGGATTTAATCTTACTGT
AGAGCCAGGCGAAGTGGTGGGCATTACTGGAGCTAGTGGATGCGGTGAGG
TGGTCCCTATGTATAGAGTAATGATAATATTAGTAGTGCATGTTTTCAAA
GAGCCACACCTTAGAAAAGATCTACTGCCGCAGACATCACTCACACATTT
ACCTTGAAGTATCCCACCTGCATTGACAGAATGCCATACCGTATCATACC
AAAACCCACACCACTGCTGCTCCTGCACCCACTTCAAAAACCAACCAAAC
AACCGCCAAATGGCAATTGTCCTCCTCCTAGGAAAGTCCACTCTGTCCTT
CCTGCTAGACCACATGTATGAGCCATCAAGGGGGGTAGTGGAGGTGGACG
GCATGGACGTGAAGGTGCTGGACCCCCGGTGGCTTCGGGGCCAGGTGGCC
GTGGTGGGACAGAACCCTGTTGTTTTTGCTGGCACGATCAGGGACAATAT
TGCCTATGGAAGGCCTGGTACGTGTGGTGTTTTTGTGTGAGGTTGTTTCT
TGTAGTATGAACACATCGGAGTTTTACCTAGTGGGCTTTTTGGTGTACAA
TGAGTTAACGGATTGTTATGGGACCAGGTTGAGTTTGAACTAGAGCATTG
GAGGGGAGTGGGATTCTCACGGAGTAATTGGTGCGTTATTGTTATTGTTG
TTATTGCTGTTATCCAAAGAAGTATGTGGCAGTATAATACTGGAGTATAC
TTTTGTGTTCTCTGTGTGTGCTGGAGTGTTGTACCACATCATTCTGTGCT
GTTGTTATTTTTTATATTTTTAGAAGCCGGAGTGTAAAGTGTTCTATATT
TTATGGGTCCATTCCCTTTTTTATGAAAAAAATATATAGTTTCATGGTAT
ATGGTAGGGGTATTCTCCAGCATAAACAAGAACACTCCACCTGAACACAG
TTGAGGCTCATGAACCACAGATACCATAAAATTATCCCACTACAACGGGG
ATAGGCACAAGGGCCAATCCCCAAAAGGGACGGGTGTGACAACGAATGCG
CTTGATGGAAATAGTTCACGATTGTGCTGGAAAGAGAGTCTGGTCCATGT
CAGAAGGAAGTATTTTGTGTTCACCTGCATACCCCTCTCATCTCCCAC
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Coding sequence (CDS) from alignment at C-tenellus_contig11009:2894..4041-

>mRNA_C-tenellus_contig11009.2.1 ID=mRNA_C-tenellus_contig11009.2.1|Name=mRNA_C-tenellus_contig11009.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=177bp|location=Sequence derived from alignment at C-tenellus_contig11009:2894..4041- (Choristocarpus tenellus KU2346)
ATGTATGAGCCATCAAGGGGGGTAGTGGAGGTGGACGGCATGGACGTGAA
GGTGCTGGACCCCCGGTGGCTTCGGGGCCAGGTGGCCGTGGTGGGACAGA
ACCCTGTTGTTTTTGCTGGCACGATCAGGGACAATATTGCCTATGGAAGG
CCTGGTACGTGTGGTGTTTTTGTGTGA
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