mRNA_C-tenellus_contig11009.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11009.1.1
Unique NamemRNA_C-tenellus_contig11009.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: A0A7C3DIG0_9BACT (ATP-binding cassette domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3DIG0_9BACT)

HSP 1 Score: 110 bits (276), Expect = 3.190e-29
Identity = 52/95 (54.74%), Postives = 72/95 (75.79%), Query Frame = 1
Query:   25 DRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDEL 309
            D  +GDRG  LSGG+RQRL +ARA+L +P ILILDEATSALD E E+ VQ+++   ++GRT F+I H ++ +R  DR+VV+ EG++V+ G  DEL
Sbjct:    1 DTVIGDRGVRLSGGERQRLAIARAILRNPPILILDEATSALDTESEIMVQQAIERLLEGRTSFVIAHRLSTVRNADRIVVLQEGRIVEEGRHDEL 95          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: UPI001BA7B817 (ATP-binding cassette domain-containing protein n=1 Tax=Leptolyngbya sp. 15MV TaxID=2819933 RepID=UPI001BA7B817)

HSP 1 Score: 114 bits (284), Expect = 7.990e-29
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 IHSRQQTLDRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDEL 309
            I   ++  D  +G+RG  LSGGQ+QRL +ARA+LADP ILILDEATS LD E E  +QRS+   M+GRTCF+I H ++ +R  D +VVI  G++++ GT D+L
Sbjct:  118 IEKLERGYDTLIGERGVRLSGGQKQRLAIARALLADPKILILDEATSNLDTESERLIQRSLARLMKGRTCFVIAHRLSTIRHADLIVVIENGRIIEQGTHDQL 220          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: A0A849ELU1_9FLAO (ATP-binding cassette domain-containing protein n=1 Tax=Eudoraea sp. TaxID=1979955 RepID=A0A849ELU1_9FLAO)

HSP 1 Score: 109 bits (272), Expect = 1.580e-28
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 1
Query:   22 LDRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDEL 309
            LD  +G+RG  LSGGQRQR+ +ARA+LADP +LILDEATS LD E E  +Q+S+    +GRT F+I H ++ +R  D+++VI EG++V++G  DEL
Sbjct:   13 LDTLIGERGIKLSGGQRQRIAIARAILADPRVLILDEATSNLDTESEGLIQQSLAALTKGRTTFVIAHRLSTIRRADQILVIEEGRIVEHGKHDEL 108          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: A0A257UDR0_9BACT (ABC transporter domain-containing protein n=1 Tax=Planctomycetia bacterium 21-64-5 TaxID=1970542 RepID=A0A257UDR0_9BACT)

HSP 1 Score: 112 bits (280), Expect = 2.060e-28
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   16 QTLDRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDELQGITG 324
            Q  D  +G+RG  LSGGQRQRL +ARAVLADP ILILDEATS LD E E  +Q S+   ++GRT F+I H ++ +   DR+VVI  G++V+ GT DEL   +G
Sbjct:   97 QGYDTLIGERGVKLSGGQRQRLAIARAVLADPRILILDEATSNLDTESERLIQHSLARLLEGRTSFVIAHRLSTVVHADRIVVIEAGRIVETGTHDELMAASG 199          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: A0A354P2U8_9PLAN (ABC transporter ATP-binding protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A354P2U8_9PLAN)

HSP 1 Score: 111 bits (277), Expect = 3.610e-28
Identity = 51/92 (55.43%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   34 VGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDEL 309
            +G+RG  LSGGQRQR+ +ARA+LADP ILILDEATS LD E E  +Q+S+ + ++GRT F+I H ++ +R  D++VVI +G++VQ GT D L
Sbjct:  107 IGERGFKLSGGQRQRIAIARAILADPKILILDEATSNLDSESERLIQQSLSELLRGRTAFVIAHRLSTIRGADKIVVIDDGRIVQVGTHDAL 198          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: A0A5C6FQ43_9PLAN (Putative multidrug export ATP-binding/permease protein n=4 Tax=Crateriforma TaxID=2714592 RepID=A0A5C6FQ43_9PLAN)

HSP 1 Score: 116 bits (291), Expect = 4.870e-28
Identity = 55/103 (53.40%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 IHSRQQTLDRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDEL 309
            I S     D  +G+RG  LSGGQRQRL +ARA+LADP ILILDEATS LD E E  +Q S++D + GRT F+I H ++ +R  DR+VV+ +G++V++G+ DEL
Sbjct:  528 IRSLPDGYDTMIGERGVKLSGGQRQRLAIARAILADPQILILDEATSNLDSESEQLIQASLVDLLAGRTAFVIAHRLSTIRNADRIVVLEDGRIVESGSHDEL 630          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: A0A2W4P270_9BACT (ABC transporter permease (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2W4P270_9BACT)

HSP 1 Score: 112 bits (279), Expect = 5.060e-28
Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1
Query:   13 QQTLDRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDEL 309
            +Q LD  +G+RG  LSGGQRQR+ +ARA+LA+P ILILDEATS LD E E  +Q+S+   M+GRT F+I H ++ +R  D+++VI +G++ + GT DEL
Sbjct:  151 EQGLDTVIGERGVKLSGGQRQRIAIARAILANPRILILDEATSNLDTESESFIQKSLSTLMKGRTTFVIAHRLSTIRQADQILVIEQGRIAERGTHDEL 249          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: A0A7K0EBQ3_9FLAO (ATP-binding cassette domain-containing protein n=1 Tax=Kriegella sp. EG-1 TaxID=2664451 RepID=A0A7K0EBQ3_9FLAO)

HSP 1 Score: 116 bits (290), Expect = 5.380e-28
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   22 LDRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDELQGITG 324
            LD  +G+RG  LSGGQRQR+ +ARAVLADP ILILDEATS LD E E  +Q+S+ +  +GRT F+I H ++ +R  D+++VI +GK+ + GT DEL  I G
Sbjct:  466 LDTLIGERGVKLSGGQRQRIAIARAVLADPKILILDEATSNLDTESEALIQKSLAELTKGRTTFVIAHRLSTIRKADKILVIEDGKIAERGTHDELISING 566          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: A0A7K2MRL9_9ACTN (ATP-binding cassette domain-containing protein n=1 Tax=Streptomyces sp. SID6013 TaxID=2690317 RepID=A0A7K2MRL9_9ACTN)

HSP 1 Score: 110 bits (274), Expect = 7.230e-28
Identity = 50/96 (52.08%), Postives = 72/96 (75.00%), Query Frame = 1
Query:   22 LDRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDEL 309
            LD  VG+ G  LSGGQRQRL +ARA++ DP +LILDEATSALD   E  VQ+++   ++GRT F++ H ++ +R  DR+VV+GEG++++ GT +EL
Sbjct:   96 LDTLVGEHGARLSGGQRQRLAIARALIRDPRVLILDEATSALDTRSEALVQQALARLLRGRTTFVVAHRLSTVRGADRIVVMGEGRILETGTHEEL 191          
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Match: UPI001669E5D3 (ABC transporter ATP-binding protein/permease n=1 Tax=Alicyclobacillus cellulosilyticus TaxID=1003997 RepID=UPI001669E5D3)

HSP 1 Score: 115 bits (289), Expect = 7.770e-28
Identity = 54/92 (58.70%), Postives = 75/92 (81.52%), Query Frame = 1
Query:   34 VGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALDMEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTFDEL 309
            VG+RG  LSGGQ+QR+ LARA+LADPAILILD+ATSA+DME E T+Q+++ + M+GRT F+I H I+ L+  D+++VI  G++V+ GT DEL
Sbjct:  463 VGERGLGLSGGQKQRIALARAILADPAILILDDATSAVDMETEYTIQQALQEVMRGRTTFVIAHRISTLKRADQILVIDGGRIVERGTHDEL 554          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3DIG0_9BACT3.190e-2954.74ATP-binding cassette domain-containing protein n=1... [more]
UPI001BA7B8177.990e-2952.43ATP-binding cassette domain-containing protein n=1... [more]
A0A849ELU1_9FLAO1.580e-2853.13ATP-binding cassette domain-containing protein n=1... [more]
A0A257UDR0_9BACT2.060e-2854.37ABC transporter domain-containing protein n=1 Tax=... [more]
A0A354P2U8_9PLAN3.610e-2855.43ABC transporter ATP-binding protein (Fragment) n=1... [more]
A0A5C6FQ43_9PLAN4.870e-2853.40Putative multidrug export ATP-binding/permease pro... [more]
A0A2W4P270_9BACT5.060e-2852.53ABC transporter permease (Fragment) n=1 Tax=Bacter... [more]
A0A7K0EBQ3_9FLAO5.380e-2854.46ATP-binding cassette domain-containing protein n=1... [more]
A0A7K2MRL9_9ACTN7.230e-2852.08ATP-binding cassette domain-containing protein n=1... [more]
UPI001669E5D37.770e-2858.70ABC transporter ATP-binding protein/permease n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11009contigC-tenellus_contig11009:1375..2237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123489.AUAN01000008_gene154
Preferred namemsbA
PFAMsABC_membrane,ABC_tran
Model size342
Max annot lvl909932|Negativicutes
KEGG koko:K11085
KEGG TC3.A.1.106
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.65e-28
EggNOG OGsCOG1132@1|root,COG1132@2|Bacteria,1TP0B@1239|Firmicutes,4H20M@909932|Negativicutes
Descriptionlipid A export permease ATP-binding protein MsbA
Cds size342
COG categoryV
BRITEko00000,ko00001,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.0975645-CDS-C-tenellus_contig11009:1374..15421680789159.0975645-CDS-C-tenellus_contig11009:1374..1542Choristocarpus tenellus KU2346CDSC-tenellus_contig11009 1375..1542 -
1680789159.1186416-CDS-C-tenellus_contig11009:2063..22371680789159.1186416-CDS-C-tenellus_contig11009:2063..2237Choristocarpus tenellus KU2346CDSC-tenellus_contig11009 2064..2237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11009.1.1prot_C-tenellus_contig11009.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11009 1375..2237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11009.1.1

>prot_C-tenellus_contig11009.1.1 ID=prot_C-tenellus_contig11009.1.1|Name=mRNA_C-tenellus_contig11009.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=114bp
IHSRQQTLDRQVGDRGESLSGGQRQRLVLARAVLADPAILILDEATSALD
MEGEMTVQRSVLDFMQGRTCFIITHHINMLRVTDRVVVIGEGKVVQNGTF
DELQGITGGALRTL
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mRNA from alignment at C-tenellus_contig11009:1375..2237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11009.1.1 ID=mRNA_C-tenellus_contig11009.1.1|Name=mRNA_C-tenellus_contig11009.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=863bp|location=Sequence derived from alignment at C-tenellus_contig11009:1375..2237- (Choristocarpus tenellus KU2346)
ATTCATTCGCGTCAACAAACACTGGATCGACAGGTAGGGGATAGAGGTGA GTCACTCAGTGGAGGACAGAGGCAGCGATTGGTACTAGCACGTGCAGTCC TGGCAGATCCAGCAATACTCATCCTGGATGAGGCCACAAGCGCCCTGGAC ATGGAAGGAGAAATGACTGTCCAGGTGAGTAGGCGAAGGGGGGAGAGGCT TCCTGTGGAGTGGGAAGGCTGGGAGATAGGATCAGGGAAGGGAATAAATA TTTTACTGGCACTTATTCTAGTGGGCTGGTGGGTGTTGAGGATGTGGGGT CATGAAAGACAAGAGGAAGGCAATTCCCCCTACTCACCACATGTACGTCT CTGAACAGTTTTGTATTTAGTAACAGGATAACCAGTGTGTAGTCCATGTG TGCTTTGCTGTATTTGCTTGTTACAACTGACTATTGTGGAGGAGGGGCAA TGGACATGTTTGTTGCACCCCTGATTTCACAAGTCAGGGTTTTACATCAT TGTGAGCAAAAGATGGTCTACGTTGGCATGTAGGAAACATGTGCCAGCAT CTTTTGGTAATGATGCCAATGCTTTGGAGAGACATTTTAAATTGTTACAT ACATCAATCTATTGATTCCAGGCACGCTAATGTATAACTTCTAGACCAAA ACTGACATATCTCCAAATAATCCACCCACCCACCCCTCTCTGCAGAGGAG TGTTCTAGACTTCATGCAAGGACGTACATGTTTCATCATTACCCATCACA TCAATATGCTCAGGGTAACTGATCGTGTTGTGGTGATTGGTGAGGGCAAG GTGGTACAGAATGGAACCTTCGATGAACTGCAGGGAATCACTGGGGGGGC ACTACGTACGCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig11009:1375..2237-

>mRNA_C-tenellus_contig11009.1.1 ID=mRNA_C-tenellus_contig11009.1.1|Name=mRNA_C-tenellus_contig11009.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=342bp|location=Sequence derived from alignment at C-tenellus_contig11009:1375..2237- (Choristocarpus tenellus KU2346)
ATTCATTCGCGTCAACAAACACTGGATCGACAGGTAGGGGATAGAGGTGA
GTCACTCAGTGGAGGACAGAGGCAGCGATTGGTACTAGCACGTGCAGTCC
TGGCAGATCCAGCAATACTCATCCTGGATGAGGCCACAAGCGCCCTGGAC
ATGGAAGGAGAAATGACTGTCCAGAGGAGTGTTCTAGACTTCATGCAAGG
ACGTACATGTTTCATCATTACCCATCACATCAATATGCTCAGGGTAACTG
ATCGTGTTGTGGTGATTGGTGAGGGCAAGGTGGTACAGAATGGAACCTTC
GATGAACTGCAGGGAATCACTGGGGGGGCACTACGTACGCTG
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