mRNA_C-tenellus_contig1096.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1096.1.1
Unique NamemRNA_C-tenellus_contig1096.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: D7G6E6_ECTSI (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E6_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 9.480e-83
Identity = 127/160 (79.38%), Postives = 144/160 (90.00%), Query Frame = 1
Query:   49 QHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAITKSNER 528
            QHNLLGMAAV QL+ DPK++AV++LLHIFSVEKL  YMAFH+++  TLA+NKIDHDSCVSSMRLLSLCSLATEHEEIPYQ+VA+TLQ+ GD+EVE+WVL+ IQTGLMEAKMDQMQRVVVI RCTNRVFGP QWKTLQ KL  WS+NV  LL+AI KSNER
Sbjct:  237 QHNLLGMAAVTQLKADPKYSAVHELLHIFSVEKLGEYMAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNER 396          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A835Z3J7_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J7_9STRA)

HSP 1 Score: 186 bits (472), Expect = 3.540e-54
Identity = 91/158 (57.59%), Postives = 121/158 (76.58%), Query Frame = 1
Query:   52 HNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAITKSNE 525
            HNLLGM+AV +L  DP++A VY+LL IF  EKL+ Y+AF K +   L ++ I HD CV +MRLLSLCSL +E +E+PY +++ETLQ++  E+VEEWVL+  Q GLMEA+MDQ+++VV+ISRCT RVFG EQW +LQ KL  W +NV+ LL  I +SNE
Sbjct:  240 HNLLGMSAVQELRNDPEYAQVYELLRIFGEEKLETYLAFAKANQALLEKHGISHDECVGNMRLLSLCSLGSEAQEVPYSVISETLQVDP-EDVEEWVLQATQAGLMEARMDQLEKVVLISRCTCRVFGKEQWLSLQAKLGQWKANVSGLLQTIQRSNE 396          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A7S2CTT4_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTT4_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.890e-45
Identity = 81/157 (51.59%), Postives = 111/157 (70.70%), Query Frame = 1
Query:   49 QHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAITKS 519
            +HNLLGM A+ QLE D ++  +Y+LL IFSV KL  Y+ F++    T+    ++H+ C+++MRLLSLCSLATEHEEIPY  +AETL++   EEVE WV+      LM+AKMDQ+Q+VV+ISRCT+RVF   QWK L ++L  W  NV  +L  I ++
Sbjct:  223 RHNLLGMTAMQQLENDAEYGKLYELLRIFSVGKLREYLNFYEAEKGTMERYGLEHEECIANMRLLSLCSLATEHEEIPYAAIAETLEVPL-EEVEYWVVATTTAKLMDAKMDQLQQVVMISRCTHRVFEHSQWKQLAERLTTWKINVRNILETIQRT 378          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A251SAQ5_HELAN (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SAQ5_HELAN)

HSP 1 Score: 155 bits (391), Expect = 2.580e-42
Identity = 78/171 (45.61%), Postives = 113/171 (66.08%), Query Frame = 1
Query:    1 ERQHLNIFFHSLLSVLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLAT-EHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510
            E  H  + F     + QH+LL M AVAQLEKD K+A VYQLL IF  ++LDAY+ FH  +   L    + H+ C++ MRL+S+  LA+ E  +I Y ++ +TLQ+E D+EVE WV++ I + L++ K+DQM +V+ +SRCT RVFGP QW  L++KL  W  N+  ++T I
Sbjct:  222 EAAHTIVEFVKAPDMFQHDLLEMPAVAQLEKDTKYALVYQLLKIFQTQRLDAYLEFHTTNSELLKSYGLVHEECIAKMRLMSIVDLASNESGQISYSLIKDTLQIE-DDEVEPWVVKAITSKLIDCKIDQMNQVIRVSRCTERVFGPRQWLALREKLATWRGNIANVITTI 391          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A5N6Q3M5_9ASTR (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q3M5_9ASTR)

HSP 1 Score: 152 bits (384), Expect = 3.110e-41
Identity = 76/171 (44.44%), Postives = 112/171 (65.50%), Query Frame = 1
Query:    1 ERQHLNIFFHSLLSVLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHE-EIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510
            E  H  I F       QH+LL M AVAQLEKD K+A +YQLL IF  ++LDAY+ FH  +   L    + H+ C++ MRL+S+  LA+    +IP+ ++ +TL++E DE VE WV++ I + L++ K+DQM +V+ +SRCT RVFGP QW+ L++KL  W  N+  ++T I
Sbjct:  227 EAAHTIIEFVKAPDSFQHDLLEMPAVAQLEKDTKYALLYQLLKIFQTQRLDAYLDFHATNSALLKSYGLVHEECIAKMRLMSIVDLASNGSGQIPFSLIKDTLKIEEDE-VEPWVVKAITSKLIDCKIDQMNQVIRVSRCTERVFGPHQWQALREKLATWRGNIANVITTI 396          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A7J6FZF8_CANSA (Eukaryotic translation initiation factor 3 subunit M n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6FZF8_CANSA)

HSP 1 Score: 149 bits (376), Expect = 4.160e-40
Identity = 73/157 (46.50%), Postives = 106/157 (67.52%), Query Frame = 1
Query:   43 VLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHE-EIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510
            + Q +LL M AV QLEKD K+A VYQLL IF   +LDAY+ F   +   L    + H+ C++ MRL+SL  L ++   +IPY ++ +TL++  D+EVE WV++ I   LM+ KMDQM +VV++SRCT+R+FG +QW+TL+ KL  W  NV  ++T I
Sbjct:  236 MFQCDLLDMPAVGQLEKDAKYALVYQLLKIFLTRRLDAYLEFQAANSTLLKSYGLVHEDCITKMRLISLADLGSDESGQIPYSLIKDTLRI-NDDEVELWVVKAIAAKLMDCKMDQMNQVVIVSRCTDRIFGQDQWQTLKTKLATWRGNVANVITTI 391          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A7N2RF70_QUELO (Eukaryotic translation initiation factor 3 subunit M n=7 Tax=Fagaceae TaxID=3503 RepID=A0A7N2RF70_QUELO)

HSP 1 Score: 149 bits (376), Expect = 4.160e-40
Identity = 72/157 (45.86%), Postives = 108/157 (68.79%), Query Frame = 1
Query:   43 VLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHE-EIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510
            + Q +LL M AV QLEKD K+A+VYQLL IF  ++LDAY+ F   +  +L    + H+ C++ MRL+SL  LA++   +IPY ++ +TL++  D+EVE WV++ I   L++ KMDQM +VV++SRCT RVFG  QW+TL+ KL  W  N+  +++ I
Sbjct:  236 MFQCDLLDMPAVGQLEKDAKYASVYQLLKIFLTQRLDAYLEFQAANSTSLKSYGLVHEDCITKMRLMSLVDLASDESGQIPYALIRDTLRI-NDDEVELWVVKAISAKLIDCKMDQMNQVVIVSRCTERVFGQNQWQTLKSKLSTWRGNIASVISTI 391          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A5J5AHA4_9ASTE (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5AHA4_9ASTE)

HSP 1 Score: 149 bits (375), Expect = 5.840e-40
Identity = 76/165 (46.06%), Postives = 107/165 (64.85%), Query Frame = 1
Query:   19 IFFHSLLSVLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLAT-EHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510
            I F  +  + Q +LL M AVAQLEKD K+A VYQLL+IF  ++LDAY  FH  +   L    + H+ C+  MRL+SL  L + E  +IPY ++ +TLQ+  D+EVE WV++ I   LM+ KMDQM ++V++SRCT RVFG  QW+ L+ KL  W  N+  ++  I
Sbjct:  228 IEFVKVPDIFQCDLLDMPAVAQLEKDAKYALVYQLLNIFLTQRLDAYFDFHAANSTLLKSYGLVHEDCIVKMRLMSLVDLGSAESGQIPYALIKDTLQI-NDDEVELWVVKAITAKLMDCKMDQMNQIVIVSRCTERVFGQHQWQALRAKLAIWRGNIANVIGTI 391          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A5D2NYP3_GOSTO (PCI domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5D2NYP3_GOSTO)

HSP 1 Score: 145 bits (365), Expect = 6.570e-40
Identity = 72/157 (45.86%), Postives = 104/157 (66.24%), Query Frame = 1
Query:   43 VLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLA-TEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510
            + Q +LL + AVAQLEKD K+A VYQLL IF  +KLDAY+ F   +   +    + H+ C++ MRL+SL  L   E  +IPY ++ +TL++  D+EVE WV++ I   LM+ KMDQM +VV++SRC+  +FGP QW +L+ KL  W  NV  L++ I
Sbjct:   89 MFQCDLLDIPAVAQLEKDSKYALVYQLLKIFLTQKLDAYLEFQAANSTLMKSYGLVHEDCITKMRLISLVDLGLNESGQIPYALIKDTLRI-NDDEVELWVVKAITAKLMDCKMDQMNQVVIVSRCSEHIFGPHQWLSLRSKLATWRGNVASLISTI 244          
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: UPI001CC61758 (eukaryotic translation initiation factor 3 subunit M-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC61758)

HSP 1 Score: 148 bits (373), Expect = 1.130e-39
Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 1
Query:   43 VLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510
            + Q +LL M AV QLEKD K++ VYQLL IF   +LDAY+ FH  +   L    + H+ C++ MRL++L  L + H EIPY ++ +TL++  D+EVE WV++ I   L++ KMDQM +VV+++RCT RVFG  QW  L+ KL +W  N+  ++  +
Sbjct:  236 MFQSDLLDMPAVGQLEKDGKYSLVYQLLKIFLTHRLDAYLDFHAANSTLLKSYGLVHEDCIAKMRLMTLADLGSNHGEIPYDLIKDTLRV-NDDEVELWVVKAITVKLLDCKMDQMNQVVIVNRCTERVFGLHQWLALRSKLTSWRGNIANVINTV 390          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E6_ECTSI9.480e-8379.38Eukaryotic translation initiation factor 3 subunit... [more]
A0A835Z3J7_9STRA3.540e-5457.59Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2CTT4_9STRA4.890e-4551.59Eukaryotic translation initiation factor 3 subunit... [more]
A0A251SAQ5_HELAN2.580e-4245.61Eukaryotic translation initiation factor 3 subunit... [more]
A0A5N6Q3M5_9ASTR3.110e-4144.44Eukaryotic translation initiation factor 3 subunit... [more]
A0A7J6FZF8_CANSA4.160e-4046.50Eukaryotic translation initiation factor 3 subunit... [more]
A0A7N2RF70_QUELO4.160e-4045.86Eukaryotic translation initiation factor 3 subunit... [more]
A0A5J5AHA4_9ASTE5.840e-4046.06Eukaryotic translation initiation factor 3 subunit... [more]
A0A5D2NYP3_GOSTO6.570e-4045.86PCI domain-containing protein n=2 Tax=Gossypium Ta... [more]
UPI001CC617581.130e-3944.23eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1096contigC-tenellus_contig1096:378..1955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G6E6
Preferred nameEIF3M
PFAMsPCI
Model size531
Max annot lvl2759|Eukaryota
KEGG koko:K15030
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001732,GO:0002020,GO:0002181,GO:0002183,GO:0002790,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005852,GO:0005856,GO:0006412,GO:0006413,GO:0006508,GO:0006518,GO:0006807,GO:0006810,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009306,GO:0009653,GO:0009893,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016282,GO:0016485,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030162,GO:0031323,GO:0031325,GO:0031369,GO:0031638,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032991,GO:0033036,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045862,GO:0046677,GO:0046903,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051604,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070864,GO:0070865,GO:0070887,GO:0070993,GO:0071236,GO:0071310,GO:0071396,GO:0071541,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0089720,GO:0097202,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:1900117,GO:1900119,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1990904,GO:2000116,GO:2001056,GO:2001270,GO:2001272
Exons4
Evalue1.55e-83
EggNOG OGsKOG2753@1|root,KOG2753@2759|Eukaryota
Ec32 ortholog descriptionProteasome component (PCI) domain
Ec32 orthologEc-10_001570.1
Descriptiontranslation initiation factor activity
Cds size531
COG categoryJ
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789156.5232465-CDS-C-tenellus_contig1096:377..5511680789156.5232465-CDS-C-tenellus_contig1096:377..551Choristocarpus tenellus KU2346CDSC-tenellus_contig1096 378..551 +
1680789156.5377545-CDS-C-tenellus_contig1096:913..10271680789156.5377545-CDS-C-tenellus_contig1096:913..1027Choristocarpus tenellus KU2346CDSC-tenellus_contig1096 914..1027 +
1680789156.5508478-CDS-C-tenellus_contig1096:1282..14441680789156.5508478-CDS-C-tenellus_contig1096:1282..1444Choristocarpus tenellus KU2346CDSC-tenellus_contig1096 1283..1444 +
1680789156.562077-CDS-C-tenellus_contig1096:1874..19551680789156.562077-CDS-C-tenellus_contig1096:1874..1955Choristocarpus tenellus KU2346CDSC-tenellus_contig1096 1875..1955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1096.1.1prot_C-tenellus_contig1096.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1096 378..1955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1096.1.1

>prot_C-tenellus_contig1096.1.1 ID=prot_C-tenellus_contig1096.1.1|Name=mRNA_C-tenellus_contig1096.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=177bp
ERQHLNIFFHSLLSVLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKL
DAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAE
TLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWK
TLQKKLKAWSSNVNQLLTAITKSNER*
back to top

mRNA from alignment at C-tenellus_contig1096:378..1955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1096.1.1 ID=mRNA_C-tenellus_contig1096.1.1|Name=mRNA_C-tenellus_contig1096.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1578bp|location=Sequence derived from alignment at C-tenellus_contig1096:378..1955+ (Choristocarpus tenellus KU2346)
GAAAGGCAACACCTAAACATTTTCTTTCATTCATTGCTCTCTGTATTGCA GCACAACTTGCTGGGCATGGCAGCTGTTGCTCAGCTTGAAAAGGACCCCA AATTTGCTGCTGTTTATCAGCTGCTGCATATATTTTCTGTGGAGAAGCTT GATGCCTACATGGCATTCCACAAGGTAATTGCAGCCATTCATTCAAAAGT GTTCCAGAAATATATGAAAGTTGAGGTCAAAATGGGTAATTTGAACATCT GAAGAGTGAACCTTAACTTTGAGTATATGAAGGTGTGGGAAATTGAGATG TCTTTCACTCTACAACTATTTATGACACTGCCGTAACTATGGATCTTTTT ATTCATTCCCTAGCCCTTCCTCTGTGAAGTGACCAAAGGTAGTTGTTAGT CTTGGTTTGGTTTCTGTTCTTGCTTCATTAATTTTGGTTGCCTGTTGACC ATACTATATGATCTATCAATTTATGATATAATTTATCGATTTATGATACG ATTTATGATTTATGTATTTATGATATGATATAACAGCAACATGGGGTAAC TCTTGCGGAGAACAAGATTGACCATGACAGCTGCGTCTCCAGCATGCGGC TACTTTCCCTGTGCTCCCTAGCAACAGAGCATGAGGAAATTCCATACCAG GTGAAGAGACTACTCAGTGAATGCCATGACTTAGTCATATGGACACTGTA CTACAAATCTATTAGTTGTTACTGCACCTGCATGGCAGAGAGTGCCTGGA ATTGGATGGCAAGGGTCTATTATTTAAGCATGTATTACTATTGACTTGCT TTTGCTATTAAGGTCACAGTTAGCCTTTATTGCAATCTCTTTAAACACCA TTGAAATGTGTATGACAACATCAGTTGTGTTCGGTACATTTTTGATCTGC TGTAGATTGTTGCAGAAACACTTCAACTGGAGGGCGATGAGGAGGTTGAG GAGTGGGTGCTGAGGTGCATACAGACTGGGTTGATGGAGGCAAAGATGGA TCAGATGCAGAGGGTTGTGGTAATCAGTCGATGCACAAACCGTGTGTTTG GACCTGAGCAGTGGAAGGTGCGAATGTCATGTCTGTTGCATGTGGTTTAT CAGGTGGTTTATCAAGAATGAAGTTGAGAGGCGATGAATACCATCATCTA CTAGTGGTGCAGTTGTACTGGGGGTACATTAATTTGTACTGTAGGTGTTT ATGGGTGGTTATTATTATTATTATTTTCAAGGATAGTAATTGTGAAATAC ATGGCAATATATACCTGCATCCTGGCAGGTACAGCACCGAAATATTTTGA TTTTAGTAATAATACTGCAAATAGTATGCTGTATTGCTTCAGTATGAAGA CGTTGTGTGACTGCAATGTAGGTGATGTCCAGGTAATGAATGTGTGGATG TCACACTTGTTATTGTATAATGTCCACCCCTCTTGCAATAACAATGACAT CAATAACAATAACAATAATAACCATAACATCAATGACAATAACACAGACG CTGCAAAAGAAGTTGAAGGCCTGGAGTTCAAATGTCAATCAGCTCCTGAC TGCCATAACAAAGAGCAATGAGAGGTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1096:378..1955+

>mRNA_C-tenellus_contig1096.1.1 ID=mRNA_C-tenellus_contig1096.1.1|Name=mRNA_C-tenellus_contig1096.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=531bp|location=Sequence derived from alignment at C-tenellus_contig1096:378..1955+ (Choristocarpus tenellus KU2346)
GAAAGGCAACACCTAAACATTTTCTTTCATTCATTGCTCTCTGTATTGCA
GCACAACTTGCTGGGCATGGCAGCTGTTGCTCAGCTTGAAAAGGACCCCA
AATTTGCTGCTGTTTATCAGCTGCTGCATATATTTTCTGTGGAGAAGCTT
GATGCCTACATGGCATTCCACAAGCAACATGGGGTAACTCTTGCGGAGAA
CAAGATTGACCATGACAGCTGCGTCTCCAGCATGCGGCTACTTTCCCTGT
GCTCCCTAGCAACAGAGCATGAGGAAATTCCATACCAGATTGTTGCAGAA
ACACTTCAACTGGAGGGCGATGAGGAGGTTGAGGAGTGGGTGCTGAGGTG
CATACAGACTGGGTTGATGGAGGCAAAGATGGATCAGATGCAGAGGGTTG
TGGTAATCAGTCGATGCACAAACCGTGTGTTTGGACCTGAGCAGTGGAAG
ACGCTGCAAAAGAAGTTGAAGGCCTGGAGTTCAAATGTCAATCAGCTCCT
GACTGCCATAACAAAGAGCAATGAGAGGTGA
back to top