mRNA_C-tenellus_contig1096.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: D7G6E6_ECTSI (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E6_ECTSI) HSP 1 Score: 259 bits (661), Expect = 9.480e-83 Identity = 127/160 (79.38%), Postives = 144/160 (90.00%), Query Frame = 1 Query: 49 QHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAITKSNER 528 QHNLLGMAAV QL+ DPK++AV++LLHIFSVEKL YMAFH+++ TLA+NKIDHDSCVSSMRLLSLCSLATEHEEIPYQ+VA+TLQ+ GD+EVE+WVL+ IQTGLMEAKMDQMQRVVVI RCTNRVFGP QWKTLQ KL WS+NV LL+AI KSNER Sbjct: 237 QHNLLGMAAVTQLKADPKYSAVHELLHIFSVEKLGEYMAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNER 396
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A835Z3J7_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J7_9STRA) HSP 1 Score: 186 bits (472), Expect = 3.540e-54 Identity = 91/158 (57.59%), Postives = 121/158 (76.58%), Query Frame = 1 Query: 52 HNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAITKSNE 525 HNLLGM+AV +L DP++A VY+LL IF EKL+ Y+AF K + L ++ I HD CV +MRLLSLCSL +E +E+PY +++ETLQ++ E+VEEWVL+ Q GLMEA+MDQ+++VV+ISRCT RVFG EQW +LQ KL W +NV+ LL I +SNE Sbjct: 240 HNLLGMSAVQELRNDPEYAQVYELLRIFGEEKLETYLAFAKANQALLEKHGISHDECVGNMRLLSLCSLGSEAQEVPYSVISETLQVDP-EDVEEWVLQATQAGLMEARMDQLEKVVLISRCTCRVFGKEQWLSLQAKLGQWKANVSGLLQTIQRSNE 396
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A7S2CTT4_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTT4_9STRA) HSP 1 Score: 161 bits (408), Expect = 4.890e-45 Identity = 81/157 (51.59%), Postives = 111/157 (70.70%), Query Frame = 1 Query: 49 QHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAITKS 519 +HNLLGM A+ QLE D ++ +Y+LL IFSV KL Y+ F++ T+ ++H+ C+++MRLLSLCSLATEHEEIPY +AETL++ EEVE WV+ LM+AKMDQ+Q+VV+ISRCT+RVF QWK L ++L W NV +L I ++ Sbjct: 223 RHNLLGMTAMQQLENDAEYGKLYELLRIFSVGKLREYLNFYEAEKGTMERYGLEHEECIANMRLLSLCSLATEHEEIPYAAIAETLEVPL-EEVEYWVVATTTAKLMDAKMDQLQQVVMISRCTHRVFEHSQWKQLAERLTTWKINVRNILETIQRT 378
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A251SAQ5_HELAN (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SAQ5_HELAN) HSP 1 Score: 155 bits (391), Expect = 2.580e-42 Identity = 78/171 (45.61%), Postives = 113/171 (66.08%), Query Frame = 1 Query: 1 ERQHLNIFFHSLLSVLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLAT-EHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510 E H + F + QH+LL M AVAQLEKD K+A VYQLL IF ++LDAY+ FH + L + H+ C++ MRL+S+ LA+ E +I Y ++ +TLQ+E D+EVE WV++ I + L++ K+DQM +V+ +SRCT RVFGP QW L++KL W N+ ++T I Sbjct: 222 EAAHTIVEFVKAPDMFQHDLLEMPAVAQLEKDTKYALVYQLLKIFQTQRLDAYLEFHTTNSELLKSYGLVHEECIAKMRLMSIVDLASNESGQISYSLIKDTLQIE-DDEVEPWVVKAITSKLIDCKIDQMNQVIRVSRCTERVFGPRQWLALREKLATWRGNIANVITTI 391
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A5N6Q3M5_9ASTR (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q3M5_9ASTR) HSP 1 Score: 152 bits (384), Expect = 3.110e-41 Identity = 76/171 (44.44%), Postives = 112/171 (65.50%), Query Frame = 1 Query: 1 ERQHLNIFFHSLLSVLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHE-EIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510 E H I F QH+LL M AVAQLEKD K+A +YQLL IF ++LDAY+ FH + L + H+ C++ MRL+S+ LA+ +IP+ ++ +TL++E DE VE WV++ I + L++ K+DQM +V+ +SRCT RVFGP QW+ L++KL W N+ ++T I Sbjct: 227 EAAHTIIEFVKAPDSFQHDLLEMPAVAQLEKDTKYALLYQLLKIFQTQRLDAYLDFHATNSALLKSYGLVHEECIAKMRLMSIVDLASNGSGQIPFSLIKDTLKIEEDE-VEPWVVKAITSKLIDCKIDQMNQVIRVSRCTERVFGPHQWQALREKLATWRGNIANVITTI 396
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A7J6FZF8_CANSA (Eukaryotic translation initiation factor 3 subunit M n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6FZF8_CANSA) HSP 1 Score: 149 bits (376), Expect = 4.160e-40 Identity = 73/157 (46.50%), Postives = 106/157 (67.52%), Query Frame = 1 Query: 43 VLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHE-EIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510 + Q +LL M AV QLEKD K+A VYQLL IF +LDAY+ F + L + H+ C++ MRL+SL L ++ +IPY ++ +TL++ D+EVE WV++ I LM+ KMDQM +VV++SRCT+R+FG +QW+TL+ KL W NV ++T I Sbjct: 236 MFQCDLLDMPAVGQLEKDAKYALVYQLLKIFLTRRLDAYLEFQAANSTLLKSYGLVHEDCITKMRLISLADLGSDESGQIPYSLIKDTLRI-NDDEVELWVVKAIAAKLMDCKMDQMNQVVIVSRCTDRIFGQDQWQTLKTKLATWRGNVANVITTI 391
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A7N2RF70_QUELO (Eukaryotic translation initiation factor 3 subunit M n=7 Tax=Fagaceae TaxID=3503 RepID=A0A7N2RF70_QUELO) HSP 1 Score: 149 bits (376), Expect = 4.160e-40 Identity = 72/157 (45.86%), Postives = 108/157 (68.79%), Query Frame = 1 Query: 43 VLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHE-EIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510 + Q +LL M AV QLEKD K+A+VYQLL IF ++LDAY+ F + +L + H+ C++ MRL+SL LA++ +IPY ++ +TL++ D+EVE WV++ I L++ KMDQM +VV++SRCT RVFG QW+TL+ KL W N+ +++ I Sbjct: 236 MFQCDLLDMPAVGQLEKDAKYASVYQLLKIFLTQRLDAYLEFQAANSTSLKSYGLVHEDCITKMRLMSLVDLASDESGQIPYALIRDTLRI-NDDEVELWVVKAISAKLIDCKMDQMNQVVIVSRCTERVFGQNQWQTLKSKLSTWRGNIASVISTI 391
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A5J5AHA4_9ASTE (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5AHA4_9ASTE) HSP 1 Score: 149 bits (375), Expect = 5.840e-40 Identity = 76/165 (46.06%), Postives = 107/165 (64.85%), Query Frame = 1 Query: 19 IFFHSLLSVLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLAT-EHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510 I F + + Q +LL M AVAQLEKD K+A VYQLL+IF ++LDAY FH + L + H+ C+ MRL+SL L + E +IPY ++ +TLQ+ D+EVE WV++ I LM+ KMDQM ++V++SRCT RVFG QW+ L+ KL W N+ ++ I Sbjct: 228 IEFVKVPDIFQCDLLDMPAVAQLEKDAKYALVYQLLNIFLTQRLDAYFDFHAANSTLLKSYGLVHEDCIVKMRLMSLVDLGSAESGQIPYALIKDTLQI-NDDEVELWVVKAITAKLMDCKMDQMNQIVIVSRCTERVFGQHQWQALRAKLAIWRGNIANVIGTI 391
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: A0A5D2NYP3_GOSTO (PCI domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5D2NYP3_GOSTO) HSP 1 Score: 145 bits (365), Expect = 6.570e-40 Identity = 72/157 (45.86%), Postives = 104/157 (66.24%), Query Frame = 1 Query: 43 VLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLA-TEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510 + Q +LL + AVAQLEKD K+A VYQLL IF +KLDAY+ F + + + H+ C++ MRL+SL L E +IPY ++ +TL++ D+EVE WV++ I LM+ KMDQM +VV++SRC+ +FGP QW +L+ KL W NV L++ I Sbjct: 89 MFQCDLLDIPAVAQLEKDSKYALVYQLLKIFLTQKLDAYLEFQAANSTLMKSYGLVHEDCITKMRLISLVDLGLNESGQIPYALIKDTLRI-NDDEVELWVVKAITAKLMDCKMDQMNQVVIVSRCSEHIFGPHQWLSLRSKLATWRGNVASLISTI 244
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Match: UPI001CC61758 (eukaryotic translation initiation factor 3 subunit M-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC61758) HSP 1 Score: 148 bits (373), Expect = 1.130e-39 Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 1 Query: 43 VLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLDAYMAFHKQHGVTLAENKIDHDSCVSSMRLLSLCSLATEHEEIPYQIVAETLQLEGDEEVEEWVLRCIQTGLMEAKMDQMQRVVVISRCTNRVFGPEQWKTLQKKLKAWSSNVNQLLTAI 510 + Q +LL M AV QLEKD K++ VYQLL IF +LDAY+ FH + L + H+ C++ MRL++L L + H EIPY ++ +TL++ D+EVE WV++ I L++ KMDQM +VV+++RCT RVFG QW L+ KL +W N+ ++ + Sbjct: 236 MFQSDLLDMPAVGQLEKDGKYSLVYQLLKIFLTHRLDAYLDFHAANSTLLKSYGLVHEDCIAKMRLMTLADLGSNHGEIPYDLIKDTLRV-NDDEVELWVVKAITVKLLDCKMDQMNQVVIVNRCTERVFGLHQWLALRSKLTSWRGNIANVINTV 390 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1096.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig1096.1.1 >prot_C-tenellus_contig1096.1.1 ID=prot_C-tenellus_contig1096.1.1|Name=mRNA_C-tenellus_contig1096.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=177bp ERQHLNIFFHSLLSVLQHNLLGMAAVAQLEKDPKFAAVYQLLHIFSVEKLback to top mRNA from alignment at C-tenellus_contig1096:378..1955+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig1096.1.1 ID=mRNA_C-tenellus_contig1096.1.1|Name=mRNA_C-tenellus_contig1096.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1578bp|location=Sequence derived from alignment at C-tenellus_contig1096:378..1955+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig1096:378..1955+ >mRNA_C-tenellus_contig1096.1.1 ID=mRNA_C-tenellus_contig1096.1.1|Name=mRNA_C-tenellus_contig1096.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=531bp|location=Sequence derived from alignment at C-tenellus_contig1096:378..1955+ (Choristocarpus tenellus KU2346)back to top |